Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F210 I1 R1 4930 262.8 3829204 96.6% 3699011 272.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC CP042583 1,318,663 Δ21,823 bp intergenic (–/–) – / – –/–

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ CP042583 1318663 1340485 21823 253 [0] [2] 255 –/– –/–

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP042583 = 13186620 (0.000)253 (1.000) 125/542 0.3 99.6% intergenic (–/–) –/– –/–
?CP042583 1340486 = 2 (0.010)intergenic (–/–) –/– –/–

GATK/CNVnator alignment

N/A