Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F210 I1 R1 4930 262.8 3829204 96.6% 3699011 272.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,920,363 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,920,3630GC98.5% 592.2 / NA 263intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/4);  new base C (134/123);  total (134/129)
Fisher's exact test for biased strand distribution p-value = 5.47e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,920,3640CG98.9% 593.3 / NA 263intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (1/2);  new base G (133/124);  total (134/129)
Fisher's exact test for biased strand distribution p-value = 6.12e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,920,3650TA97.7% 592.0 / NA 263intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (1/5);  new base A (133/123);  total (134/129)
Fisher's exact test for biased strand distribution p-value = 1.13e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 263 total aligned reads displayed.

TGGCGTAGTAATACGCTTTCACCT‑GCTCCCAGTCCGCTTTGGGGATTGGCTCCAGATATTTTTCCAGCTGGCGGAAGTCATGATTAATCGCTTTATCGCGACGCAAGCGGCGACGACTTTTCTCCAGGTCAAGAAAACCAGCTTCTGCATTACCTTCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGGC‑TTACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTCGGCACGATGACACCGGCCCGTTCCAGTTCTTTAATTACCGCAACCTCACGGACAATCGTTGGTCGGCCGAACGGATAACGTACGGAATGAAACAGATGATGCGTCATGCGCTTTACATACAGCTTTTTGCCGTTGCGCTCGACGCATTGCACCCCGCTCA  >  CP042583/1920086‑1920640
                                                                                                                                                                                                                                                                                        ||||                                                                                                                                                                                                                                                                                   
tGGCGTAGTAATACGCTTTCACCT‑GCTCCCAGTCCGCTTTGGGGATTGGCTCCAGATATTTTTCCAGCTGGCGGAAGTCATGATTAATCGCTTTATCGCGACGCAAGCGGCGACGACTTTTCTCCAGGTCAAGAAAACCAGCTTCTGCATTACCTTCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATg                                                                                                                                                                                                                                                                            <  1:279849/289‑1 (MQ=255)
   cGTAGTAATACGCTTTCACCT‑GCTCCCAGTCCGCTTTGGGGATTGGCTCCAGATATTTTTCCAGCTGGCGGAAGTCATGATTAATCGCTTTATCGCGACGCAAGCGGCGACGACTTTTCTCCAGGTCAAGAAAACCAGCTTCTGCATTACCTTCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCt                                                                                                                                                                                                                                                                          <  1:205270/288‑1 (MQ=255)
   cGTAGTAATACGCTTTCACCT‑GCTCCCAGTCCGCTTTGGGGATTGGCTCCAGATATTTTTCCAGCTGGCGGAAGTCATGATTAATCGCTTTATCGCGACGCAAGCGGCGACGACTTTTCTCCAGGTCAAGAAAACCAGCTTCTGCATTACCTTCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCt                                                                                                                                                                                                                                                                          <  1:794137/288‑1 (MQ=255)
          aTACGCTTTCAACT‑GCTGCCAGTCCGGTTTGGGGATTGGCTCCAGATATTTTTCCAGCTGGCGGAAGTCATGATTAATCGCTTTATCGCGACGCAAGCGGCGACGACTTTTCTCCAGGTCAAGAAAACCAGCTTCTGCATTACCTTCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATAc                                                                                                                                                                                                                                                                  <  2:1847748/289‑1 (MQ=255)
            taccTTTCCCCTGGCTCCCA‑TCCGGTTTGGGGATTGGCTCCAGATATTTTTCCAGCTGGCGGAAGTCATGATTAATCGCTTTATCGCGACGCAAGCGGCGACGACTTTTCTCCAGGTCAAGAAAACCAGCTTCTGCATTACCTTCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCa                                                                                                                                                                                                                                                                <  2:421069/286‑1 (MQ=255)
            aCGCTTTCACCT‑GCTCCCAGTCCGCTTTGGGGATTGGCTCCAGATATTTTTCCAGCTGGCGGAAGTCATGATTAATCGCTTTATCGCGACGCAAGCGGCGACGACTTTTCTCCAGGTCAAGAAAACCAGCTTCTGCATTACCTTCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCa                                                                                                                                                                                                                                                                >  1:723195/1‑289 (MQ=255)
             cGCTTTCACCT‑GCTCCCAGTCCGCTTTGGGGATTGGCTCCAGATATTTTTCCAGCTGGCGGAAGTCATGATTAATCGCTTTATCGCGACGCAAGCGGCGACGACTTTTCTCCAGGTCAAGAAAACCAGCTTCTGCATTACCTTCTG‑TTTTCACATCGATATGGCGAACATAACAACAGCCATGCT‑GACGATTACTGCTATGCCTTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATCCTGCATGCTGGGCATACCAg                                                                                                                                                                                                                                                               >  1:191100/1‑289 (MQ=255)
             cGCTTTCACCT‑GCTCCCAGTCCGCTTTGGGGATTGGCTCCAGATATTTTTCCAGCTGGCGGAAGTCATGATTAATCGCTTTATCGCGACGCAAGCGGCGACGACTTTTCTCCAGGTCAAGAAAACCAGCTTCTGCATTACCTTCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAg                                                                                                                                                                                                                                                               >  2:630756/1‑289 (MQ=255)
             cGCTTTCACCT‑GCTCCCAGTCCGCTTTGGGGATTGGCTCCAGATATTTTTCCAGCTGGCGGAAGTCATGATTAATCGCTTTATCGCGACGCAAGCGGCGACGACTTTTCTCCAGGTCAAGAAAACCAGCTTCTGCATTACCTTCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAg                                                                                                                                                                                                                                                               >  1:291121/1‑289 (MQ=255)
             cGCTTTCACCT‑GCTCCCAGTCCGCTTTGGGGATTGGCTCCAGATATTTTTCCAGCTGGCGGAAGTCATGATTAATCGCTTTATCGCGACGCAAGCGGCGACGACTTTTCTCCAGGTCAAGAAAACCAGCTTCTGCATTACCTTCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑AAACTGCATCCTGGCCATAcccg                                                                                                                                                                                                                                                               >  2:1224906/1‑287 (MQ=255)
             cGCTTTCACCT‑GCTCCCAGTCCGCTTTGGGGATTGGCTCCAGATATTTTTCCAGCTGGCGGAAGTCATGATTAATCGCTTTATCGCGACGCAAGCGGCGACGACTTTTCTCCAGGTCAAGAAAACCAGCTTCTGCATTACCTTCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACCGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAg                                                                                                                                                                                                                                                               >  2:322913/1‑289 (MQ=255)
               cTTTCACCT‑GCTCCCAGTCCGCTTTGGGGATTGGCTCCAGATATTTTTCCAGCTGGCGGAAGTCATGATTAATCGCTTTATCGCGACGCAAGCGGCGACGACTTTTCTCCAGGTCAAGAAAACCAGCTTCTGCATTACCTTCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCACGCTGGGCATACCAGTc                                                                                                                                                                                                                                                             >  2:1537220/1‑289 (MQ=255)
                tttCACCT‑GCTCCCAGTCCGCTTTGGGGATTGGCTCCAGATATTTTTCCAGCTGGCGGAAGTCATGATTAATCGCTTTATCGCGACGCAAGCGGCGACGACTTTTCTCCAGGTCAAGAAAACCAGCTTCTGCATTACCTTCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCa                                                                                                                                                                                                                                                            >  2:810735/1‑289 (MQ=255)
                tttCACCT‑GCTCCCAGTCCGCTTTGGGGATTGGCTCCAGATATTTTTCCAGCTGGCGGAAGTCATGATTAATCGCTTTATCGCGACGCAAGCGGCGACGACTTTTCTCCAGGTCAAGAAAACCAGCTTCTGCATTACCTTCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCa                                                                                                                                                                                                                                                            >  2:593057/1‑289 (MQ=255)
                  tCACCT‑GCTCCCAGTCCGCTTTGGGGATTGGCTCCAGATATTTTTCCAGCTGGCGGAAGTCATGATTAATCGCTTTATCGCGACGCAAGCGGCGACGACTTTTCTCCAGGTCAAGAAAACCAGCTTCTGCATTACCTTCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCAATGCATTTTCTTAAACGCCAGCCCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGc                                                                                                                                                                                                                                                          >  1:1564381/1‑289 (MQ=255)
                    aCCT‑ACTCCCAGGACGCTTTGGGGATTGGCTCCAGATATTTGTCCAGCTGGCGAAAGTCATGATTAATCGCTTTATCGCGACGCAAGCGGCGACGACTTTTCTCCAGGTCAAGAAAACCAGCTTCTGCATTACCTTCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCaa                                                                                                                                                                                                                                                        <  2:1760222/289‑1 (MQ=255)
                      cT‑GCTCCCAGTCCGCTTTGGGGATTGGCTCCAGATATTTTTCCAGCTGGCGGAAGTCATGATTAATCGCTTTATCGCGACGCAAGCGGCGACGACTTTTCTCCAGGTCAAGAAAACCAGCTTCTGCATTACCTTCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATg                                                                                                                                                                                                                                                      <  1:1744726/289‑1 (MQ=255)
                         gCTCCCAGTCCGCTTTGGGGATTGGCTCCAGATATTTTTCCAGCTGGCGGAAGTCATGATTAATCGCTTTATCGCGACGCAAGCGGCGACGACTTTTCTCCAGGTCAAGAAAACCAGCTTCTGCATTACCTTCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAAt                                                                                                                                                                                                                                                       >  1:1764704/1‑286 (MQ=255)
                          cTCCCAGTCCGCTTTGGGGATTGGCTCCAGATATTTTTCCAGCTGGCGGAAGTCATGATTAATCGCTTTATCGCGACGCAAGCGGCGACGACTTTTCTCCAGGTCAAGAAAACCAGCTTCTGCATTACCTTCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCtg                                                                                                                                                                                                                                                   >  1:529995/1‑289 (MQ=255)
                          cTCCCAGTCCGCTTTGGGGATTGGCTCCAGATATTTTTCCAGCTGGCGGAAGTCATGATTAATCGCTTTATCGCGACGCAAGCGGCGACGACTTTTCTCCAGGTCAAGAAAACCAGCTTCTGCATTACCTTCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCtg                                                                                                                                                                                                                                                   >  2:1826947/1‑289 (MQ=255)
                            cccAGTCCGCTTTGGGGATTGGCTCCAGATATTTTTCCAGCTGGCGGAAGTCATGATTAATCGCTTTATCGCGACGCAAGCGGCGACGACTTTTCTCCAGGTCAAGAAAACCAGCTTCTGCATTACCTTCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCtgat                                                                                                                                                                                                                                                 <  1:1024915/289‑1 (MQ=255)
                               aGTCCGCTTTGGGGATTGGCTCCAGATATTTTTCCAGCTGGCGGAAGTCATGATTAATCGCTTTATCGCGACGCAAGCGGCGACGACTTTTCTCCAGGTCAAGAAAACCAGCTTCTGCATTACCTTCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCtgatga                                                                                                                                                                                                                                               >  1:1179975/1‑288 (MQ=255)
                               aGTCCGCTTTGGGGATTGGCTCCAGATATTTTTCCAGCTGGCGGAAGTCATGATTAATCGCTTTATCGCGACGCAAGCGGCGACGACTTTTCTCCAGGTCAAGAAAACCAGCTTCTGCATTACCTTCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAACAATGCTGATGaa                                                                                                                                                                                                                                              >  1:1861478/1‑289 (MQ=255)
                                  ccGCTTTGGGGATTGGCTCCAGATATTTTTCCAGCTGGCGGAAGTCATGATTAATCGCTTTATCGCGACGCAAGCGGCGACGACTTTTCTCCAGGTCAAGAAAACCAGCTTCTGCATTACCTTCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGaa                                                                                                                                                                                                                                              <  1:960201/286‑1 (MQ=255)
                                  ccGCTTTGGGGATTGGCTCCAGATATTTTTCCAGCTGGCGGAAGTCATGATTAATCGCTTTATCGCGACGCAAGCGGCGACGACTTTTCTCCAGGTCAAGAAAACCAGCTTCTGCATTACCTTCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAAcc                                                                                                                                                                                                                                            <  1:1763308/288‑1 (MQ=255)
                                     cTTTGGGGATTGGCTCCAGATATTTTTCCAGCTGGCGGAAGTCATGATTAATCGCTTTATCGCGACGCAAGCGGCGACGACTTTTCTCCAGGTCAAGAAAACCAGCTTCTGCATTACCTTCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATg                                                                                                                                                                                                                                                                            <  1:1882337/253‑1 (MQ=255)
                                     cTTTGGGGATTGGCTCCAGATATTTTTCCAGCTGGCGGAAGTCATGATTAATCGCTTTATCGCGACGCAAGCGGCGACGACTTTTCTCCAGGTCAAGAAAACCAGCTTCTGCATTACCTTCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATg                                                                                                                                                                                                                                                                            >  2:1882337/1‑253 (MQ=255)
                                     cTTTGGGGATTGGCTCCAGATATTTTTCCAGCTGGCGGAAGTCATGATTAATCGCTTTATCGCGACGCAAGCGGCGACGACTTTTCTCCAGGTCAAGAAAACCAGCTTCTGCATTACCTTCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCg                                                                                                                                                                                                                                         >  1:874112/1‑288 (MQ=255)
                                       ttGGAGATTGTCCCCAGAATTTTTTCCATCTGGCGGAAGTAATGTTTAATCGCTTTATCGCGACGCAAGCGGCGACGACTTTTCCCCAGGTCAATAAAACCAGCTTCTGCATTACCTTCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTCCAACATGGCTTGCCGTACTTCGTCAGAATAGGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCa                                                                                                                                                                                                                                      <  2:65134/289‑1 (MQ=255)
                                               tGGGTCCAGATATTTTTCCAGCTGGCGGAAGTCAGAATTAATCGCTTTACCGCGACGCAAGCGGCGACGACTTTTCTCCAGGTCAAGAAAACCAGCTTCTGCATTACCTTCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCa                                                                                                                                                                                                                              <  2:1047756/289‑1 (MQ=255)
                                               tGGCTCCAGATATTTTTCCAGCTGGCGGAAGTCATGATTAATCGCTTTATCGCGACGCAAGCGGCGACGACTTTTCTCCAGGTCAAGAAAACCAGCTTCTGCATTACCTTCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCa                                                                                                                                                                                                                              <  1:317964/289‑1 (MQ=255)
                                               tGGCTCCAGATATTTTTCCAGCTGGCGGAAGTCATGATTAATCGCTTTATCGCGACGCAAGCGGCGACGACTTTTCTCCAGGTCAAGAAAACCAGCTTCTGCATTACCTTCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCAACATCCTCa                                                                                                                                                                                                                              >  2:551187/1‑289 (MQ=255)
                                                             ttcccAGCTGGCGGAAGTCATGATTACTCGCTTTATCGCGACGCAAGCGGCGACGACTTTTCTCCAGGTCAAGAAAACCAGCTTCTGCATTACCTTCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGc                                                                                                                                                                                                                <  1:1658008/286‑1 (MQ=255)
                                                               tCCAGCTGGCGGAAGTCATGATTAATCGCTTTATCGCGACGCAAGCGGCGACGACTTTTCTCCAGGTCAAGAAAACCAGCTTCTGCATTACCTTCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTc                                                                                                                                                                                                              >  2:829547/1‑289 (MQ=255)
                                                                              tCATGATTAATCGCTTTATCGCGACGCAAGCGGCGACGACTTTTCTCCAGGTCAAGAAAACCAGCTTCTGCATTACCTTCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCaa                                                                                                                                                                                               >  1:838849/1‑289 (MQ=255)
                                                                               cATGATTAATCGCTTTATCGCGACGCAAGCGGCGACGACTTTTCTCCAGGTCAAGAAACCCAGCTTCTGCATTACCTTCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATAAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCa                                                                                                                                                                                                <  1:151842/287‑1 (MQ=255)
                                                                                       aTCGCTTTATCGCGACGCAAGCGGCGACGACTTTTCTCCAGGTCAAGAAAACCAGCTTCTGCATTACCTTCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCAcc                                                                                                                                                                                       >  2:889708/1‑288 (MQ=255)
                                                                                              tATCGCGCCGCAAGCGGCGACGACTTTTCTCCAGGTCAAGAAAACCAGCTTCTGCATTACCTTCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCAcc                                                                                                                                                                               <  1:645227/289‑1 (MQ=255)
                                                                                                     aCGCAAGCGGCGACGACTTTTCTCCAGGTCAAGAAAACCAGCTTCTGCATTACCTTCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACg                                                                                                                                                                        <  2:838849/289‑1 (MQ=255)
                                                                                                      cGCAAGCGGCGACGACTTTTCTCCAGGTCAAGAAAACCAGCTTCTGCATTACCTTCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGa                                                                                                                                                                       >  1:1823961/1‑289 (MQ=255)
                                                                                                        cAAGCGGCGACGACTTTTCTCCAGGTCAAGAAAACCAGCTTCTGCATTACCTTCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCACCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGa                                                                                                                                                                       >  1:1089572/1‑287 (MQ=255)
                                                                                                          aGCGGCGACGACTTTTCTCCAGGTCAAGAAAACCAGCTTCTGCATTACCTTCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATAACTTCAGTCACCAGCAAAGCCCGCCATCCACCCACAATTTTCACCGCTTCACCAAAAACGATCt                                                                                                                                                                    >  2:394374/1‑288 (MQ=255)
                                                                                                              gggactcctttcatcCAGGACAAGAAAACCAGCTTCGGCATTACCTGCTG‑TTTTCACATAGATATGGCGAACATAACAACAG‑CAAGCTGGACATTAAATGTTAGGCATTTTTTTAAACGCAATCGCCACTTCTTTCAACATGGCTTCCCGTACTCCGTCAGAATAAGGCA‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGTTGACCCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTCgg                                                                                                                                                                <  2:1764704/275‑1 (MQ=255)
                                                                                                                          ctcCAGGTCAAGAAAACCAGCTTTTCCATTACCTTCTG‑TTTTCACATAGTAATGCCGAACATACCAACACCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCACCATGCCTTGCCGTACTTCGTCAGAATAGGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTCGGCACGATGACACCg                                                                                                                                                   <  2:1700344/289‑1 (MQ=255)
                                                                                                                                          ccAGCTTCTGCATTACCTTCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTCGGCACGATGACACCGGCCCGTTCCAGTTCtt                                                                                                                                   >  2:724296/1‑289 (MQ=255)
                                                                                                                                                    tcattccTTCTGTTTTTCACATAGATAGGGGAAAAATAACACCAGCCATGCT‑GACGATTAATGCTATGCATTTCCTTAAACGCCAGCGCCACTGCTTTCAACAGGGCTTCCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTCGGCACGATGACACCGGCCCGTTCCAGTTCTTTAATTACCg                                                                                                                          <  2:1154453/284‑1 (MQ=255)
                                                                                                                                                     aTTACCTTCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTCGGCACGATGACACCGGCCCGTTCCAGTTCTTTAATTACCGCa                                                                                                                        <  1:593057/289‑1 (MQ=255)
                                                                                                                                                       tACCTTCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTCGGCACGATGACACCGGCCCGTTCCAGTTCTTTAATTACCACaa                                                                                                                       >  2:478200/1‑288 (MQ=255)
                                                                                                                                                        aCCTTCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTCgg                                                                                                                                                                >  2:684807/1‑246 (MQ=255)
                                                                                                                                                         ccTTCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCtgat                                                                                                                                                                                                                                                 <  2:504222/164‑1 (MQ=255)
                                                                                                                                                           ttCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTCGGCACGATGACACCGGCCCGTTCCAGTTCTTTAATTACCGCAACCTCa                                                                                                                  <  1:470211/289‑1 (MQ=255)
                                                                                                                                                            tCTG‑TTTTCACATCGATATGGCGAACCTAACAACAGCCATGCT‑GACGATTAATGCTCTGCATTTTCTTAAACGCCAGCGCCACTTCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑TTCCTGCATGCTGGGCATACCAGTCAGCAATGCTGTTGAACCCCGCCATATCTTCAGTCACCAGCACCGCTCGCCATTCACCTTCAATTTTCACCGCTTCACCAAAAACGCTCTTCGGCATGTTCACCCCGGCCCGTTCCCGCTCCTTAATTCCCCCAACCCCa                                                                                                                  >  2:1908889/1‑288 (MQ=255)
                                                                                                                                                            tCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAg                                                                                                                                                                                                                                                           <  2:899751/151‑1 (MQ=255)
                                                                                                                                                            tCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAg                                                                                                                                                                                                                                                           >  1:899751/1‑151 (MQ=255)
                                                                                                                                                              tG‑TTTTCACATAGATATGCCGAACATAACAAAAGCCAGGCT‑GACGATTAATGCTATGCATTTTCTTACACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTCGGCACGATGACACCGGCCCGTTCCa                                                                                                                                         <  2:1056514/263‑1 (MQ=255)
                                                                                                                                                               g‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTCGGCACGATGACACCGGCCCGTTCCAGTTCTTTAATTACCGCAACCTCACGGa                                                                                                              <  1:829547/289‑1 (MQ=255)
                                                                                                                                                                    tCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTCGGCACGATGACACCGGCCCGTTCCAGTTCTTTAATTACCGCAACCTCACGGACaa                                                                                                           >  2:1424646/1‑288 (MQ=255)
                                                                                                                                                                         tAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTCGGCACGATGACACCGGCCCGTTCCAGTTCTTTAAt                                                                                                                               >  1:1056514/1‑263 (MQ=255)
                                                                                                                                                                           gATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTCGGCACGATGACACCGGCCCGTTCCAGTTCTTTAATTCCCGCACCCCCACGCACAATCGTTgt                                                                                                    >  2:280013/1‑287 (MQ=255)
                                                                                                                                                                           gATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTCGGCACGATGACACCGGCCCGTTCCAGTTCTTTAATTACCGCAACCTCACGGACAATCGTTgg                                                                                                    >  2:1604000/1‑288 (MQ=255)
                                                                                                                                                                             tatGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAACCGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTCGGCACGATGACACCGGCCCGTTCCAGTTCTTTAATTACCGCAACCTCACGGACAATCGTTGGt                                                                                                   <  1:507675/287‑1 (MQ=255)
                                                                                                                                                                                ggCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCt                                                                                                                                                                                                  >  2:1672066/1‑189 (MQ=255)
                                                                                                                                                                                      cATAACAACAGCCATGCT‑GACGATTACTGCTATGCATTTTCTTAAACGCCAGCCCCACTGCTTTCAACATGGCTTGCCGTACTTTGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCACTCAGCCATGCTGATAAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACACTCAATTTTCACCGCTCCACCAAAAACGATCTTCTGCACGATGACACCGGCCCGTTCCAGTTCTTAAATTTCCGCAACCTCACGGAAAACCTTTggccggccaacacg                                                                                        >  2:1088470/1‑283 (MQ=255)
                                                                                                                                                                                      cATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGc                                                                                                                                                                                                                                        >  1:375535/1‑145 (MQ=255)
                                                                                                                                                                                      cATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTc                                                                                                                                                                  <  2:678824/215‑1 (MQ=255)
                                                                                                                                                                                      cATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTc                                                                                                                                                                  >  1:678824/1‑215 (MQ=255)
                                                                                                                                                                                      cATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTCGGCACGATGACACCGGCCCGTTCCAGTTCTTTAATTACCGCAACCTCACTGACAATCGTTGGTCGGCCGAACgg                                                                                        >  1:71158/1‑289 (MQ=255)
                                                                                                                                                                                      cATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTCGGCACGATGACACCGGCCCGTTCCAGTTCTTTAATTACCGCAACCTCACGGACAATCGTTGGTCGGCCGAACgg                                                                                        >  2:1473934/1‑289 (MQ=255)
                                                                                                                                                                                      cATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTCGGCACGATGACACCGGCCCGTTCCAGTTCTTTAATTACCGCAACCTCACGGACAATCGTTGGTCGGCCGAACgg                                                                                        >  2:756919/1‑289 (MQ=255)
                                                                                                                                                                                      cATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTCGGCACGATGACACCGGCCCGTTCCAGTTCTTTAATTACCGCAACCTCACGGACAATCGTTGGTCGGCCGAACgg                                                                                        >  1:1685019/1‑289 (MQ=255)
                                                                                                                                                                                        tAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTAAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTCGGCACGATGACACCGGCCCGTTCCAGTTCTTTAATTACCGCAACCTCACGGACAATCGTTGGTCGGCCGAACGGAt                                                                                      <  2:862143/289‑1 (MQ=255)
                                                                                                                                                                                                 ccATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTCGGCACGATGACACCGGCCCGTTCCAGTTCTTTAATTACCGCa                                                                                                                        <  1:435348/246‑1 (MQ=255)
                                                                                                                                                                                                 ccATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTCGGCACGATGACACCGGCCCGTTCCAGTTCTTTAATTACCGCa                                                                                                                        >  2:435348/1‑246 (MQ=255)
                                                                                                                                                                                                  cATGCT‑GACAATTAATGCTGTGCATTTTCATAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAAAAAGGCG‑ATACTGCATGCTGGCCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTCGGCACGATGACACCGGCCCGTTCCAGTTCTTTAATTACCGCAACCTCACGGACAATCGTTGGTCGGCCGAACGGATAACGTACGGa                                                                            <  2:275554/289‑1 (MQ=255)
                                                                                                                                                                                                   aTGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCa                                                                                                                                                                                                                              >  2:948046/1‑142 (MQ=255)
                                                                                                                                                                                                     gCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTCGGCACGATGACACCGGCCCGTTCCAGTTCTTTAATTACCGCAACCTCACGGACAATCGTTGGTCGGCCGAACGGATAACGTACGGAATg                                                                         >  2:1617583/1‑289 (MQ=255)
                                                                                                                                                                                                          aCGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTCGGCACGATGACACCGGCCCGTTCCAGTTCTTTAATTACCGCAACCTCACGGa                                                                                                              <  1:1325832/248‑1 (MQ=255)
                                                                                                                                                                                                          aCGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTCGGCACGATGACACCGGCCCGTTCCAGTTCTTTAATTACCGCAACCTCACGGa                                                                                                              >  2:1325832/1‑248 (MQ=255)
                                                                                                                                                                                                          aCGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTCGGCACGATGACACCGGCCCGTTCCAGTTCTTTAATTACCGCAACCTCACGGACAATCGTTGGTCGGCCGAACGGATAACGTACGGAATGAAAc                                                                     >  1:1130887/1‑289 (MQ=255)
                                                                                                                                                                                                                       tGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTCGGCACGATGACACCGGCCCGTTCCAGTTCTTTAATTACCGCAACCTCACGGACAATCGTTGGTCGGCCGAACGGATAACGTACGGAATGAAACAGATGATGCGTCa                                                        >  1:425649/1‑289 (MQ=255)
                                                                                                                                                                                                                        gCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTCGGCACGATGACACCGGCCCGTTCCAGTTCTTTAATTACCGCAACCTCACGGACAATCGTTGGTCGGCCGAACGGATAACGTACGGAATGAAACAGATGATGCGTCAt                                                       <  2:360478/289‑1 (MQ=255)
                                                                                                                                                                                                                        gCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTCGGCACGATGACACCGGCCCGTTCCAGTTCTTTAATTACCGCAACCTCACGGACAATCGTTGGTCGGCCGAACGGATAACGTACGGAATGAAACAGATGATGCGTCAt                                                       <  1:809660/289‑1 (MQ=255)
                                                                                                                                                                                                                            tttCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTCGGCACGATGACACCGGCCCGTTCCAGTTCTTTAATTACCGCAACCTCACGGACAATCGTTGGTCGGCCGAACGGATAACGTACGGAATGAAACAGATGATGCGTCATgc                                                     >  1:1365075/1‑287 (MQ=255)
                                                                                                                                                                                                                            tttCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTCGGCACGATGACACCGGCCCGTTCCAGTTCTTTAATTACCGCAACCCCACGGACAATCGTTGGTCGGCCGAACGGATAACGTACGGAATGAAACAGATGCATCGTCATgc                                                     >  2:160148/1‑287 (MQ=255)
                                                                                                                                                                                                                             ttCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTCCGTTATTTCGTCAGAATAAGGCA‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTCGGCACGATGACACCGGCCCGTTCCAGTTCTTTAATTACCGCAACCTCACGGACAATCGTTGGTCGGCCGAACGGATAACGTACGGAATGAAACAGATGATGCGTCATGCGCt                                                  <  1:1529640/289‑1 (MQ=255)
                                                                                                                                                                                                                              tCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTCGGCACGATGACACCGGCCCGTTCCAGTTCTTTAATTACCGCAACCTCACGGACAATCGTTGGTCGGCCGAACGGATAACGTACGGAATGAAACAGATGATGCGTCATGCGCtt                                                 >  1:1895943/1‑289 (MQ=255)
                                                                                                                                                                                                                               cTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTCGGCACGATGACACCGGCCCGTTCCAGTTCTTTAATTACCGCAACCTCACGGACAATCGTTGGTCGGCCGAACGGATAACGTACGGAATGAAACAGATGATGCGTCATGCGCttt                                                <  1:1604000/289‑1 (MQ=255)
                                                                                                                                                                                                                                   aaCGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTCGGCACGATGACACCGGCCCGTTCCAGTTCTTTAATTACCGCAACCTCACGGACAATCGTTGGTCGGCCGAACGGATAACGTACGGAATGAAACAGATGATGCGTCATGCGCTTtacat                                            >  1:1287471/1‑289 (MQ=255)
                                                                                                                                                                                                                                    aCGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTCGGCACGATGACACCGGCCCGTTCCAGTTCTTTAATTACCGCAACCTCACGGACAATCGTTGGTCGGCCGAACGGATAACGTACGGAATGAAACAGATGATGCGTCATGCGCTTtacat                                            >  1:2500/1‑288 (MQ=255)
                                                                                                                                                                                                                                          gcgcCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTCGGCACGATGACACCGGCCCGTTCCAGTTCTTTAATTACCGCAACCTCACGGACAATCGTTGGTCGGCCGAACGGATAACGTACGGAATGAAACAGATGATGCGTCATGCGCTTTACATACAGCtt                                     >  1:327737/1‑289 (MQ=255)
                                                                                                                                                                                                                                          gcgcCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTCGGCACGATGACACCGGCCCGTTCCAGTTCTTTAATTACCGCAACCCCACGGACAATCGTTGGTCGGCCGAACGGATAACGTACGGAATGAAACAGATGATGCGTCCTGCGCTTTACATACATCtt                                     >  2:1188775/1‑289 (MQ=255)
                                                                                                                                                                                                                                                cTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTCGGCACGATGACACCGGCCCGTTCCAGTTCTTTAATTGCCGCAACCCCACGGACAATCGTTGGTCGGCCGAACGGATAACGTACGGAAAGAAACAGACTATGCGTCATGCGCCTTACATACAGCTTTTTGc                                >  2:344314/1‑288 (MQ=255)
                                                                                                                                                                                                                                                cTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTCGGCACGATGACACCGGCCCGTTCCAGTTCTTTAATTACCGCAACCTCACGGACAATCGTTGGTCGGCCGAACGGATAACGTACGGAATGAAACAGATGATGCGTCATGCGCTTTACATACAGCTTTTTGcc                               >  2:1244750/1‑289 (MQ=255)
                                                                                                                                                                                                                                                 ccgttacaccagcgCTTCCCGTACTTCGTCAAATTAAGGCG‑TTACTGTCTGCTGGGCATACCAGTCAGCAATGCTGATAAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTCGGCACGATGACACCGGCCCGTTCCAGTTCTTTAATTACCGCAACCTCACGGACAATCGTTGGTCGGCCGAACGGATAACGTACGGAATGAAACAGATGATGCGTCATGCGCTTTACATACAGCTTTTTGCCg                              <  1:1478261/276‑1 (MQ=255)
                                                                                                                                                                                                                                                                     gTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTCGGCACGATGACACCGGCCCGTTCCAGTTCTTTAATTACCGCAACCTCACGGACAATCGTTGGTCGGCCGAACGGATAACGTACGGAATGAAACAGATGATGCGTCATGCGCTTTACATACAGCTTTTTGCCGTTGCGCTCGACGCATTGCAc          <  1:125869/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                     gTACTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTCGGCACGATGACACCGGCCCGTTCCAGTTCTTTAATTACCGCAACCTCACGGACAATCGTTGGTCGGCCGAACGGATAACGTACGGAATGAAACAGATGATGCGTCATGCGCTTTACATACAGCTTTTTGCCGTTGCGCTCGACGCATTGCAc          <  1:756919/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                      ttcTTCATCAG‑ATAAGGGCGTTACGCCTTGCTGTGCAAACCTGTCAGCAATGCTGCTAAACCCCGCCATATCTTCATTCACCAGCAACGCTCGCCATTCACCCTCAAGTTTCACCGCTTCACCAAAAACGATCTTCGGCACGCTGACACTGGCCCGTTCCAGTTCTTTAATTACCGCAACCTCACGGACAATCGTTGGTCGGCCGAACGGATAACGTACGGAATGAAACAGATGATGCGTCATGCGCTTTACATACAGCTTTTTGCCGTTGCGCTCGACGCATTGCAcc         <  1:891678/287‑1 (MQ=255)
                                                                                                                                                                                                                                                                      tACTGCGGCAAAATAAGGCG‑ATACTCCAGGCTGGCAATACCAATAAGCAATGCTGAGGAACCCCGCCATATCTTCAGTCACCAGCAACGCCCGCCATTCACCCTCAATTTTCACCGCATCACCAAAAACGATCGTCGGCACGATGACACCGGCCCGTTCCAGTTCTTTAATTACCGCAACCTCACGGACAATCGTTGGTCGGCCGAACGGATAACGTACGGAATGAAACAGATGATGCGTCATGCGCTTTACATACAGCTTTTTGCCGTTGCGCTCGACGCATTGCAcc         <  2:217893/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                        cTTCGTCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTCGGCACGATGACACCGGCCCGTTCCAGTTCTTTAATTACCGCAACCTCACGGACAATCGTTGGTCGGCCGAACGGATAACGTACGGAATGAAACAGATGATGCGTCATGCGCTTTACATACAGCTTTTTGCCGTTGCGCTCGACGCATTg             >  1:1617659/1‑283 (MQ=255)
                                                                                                                                                                                                                                                                             tCAGAATAAGGCG‑ATACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTCGGCACGATGACACCGGCCCGTTCCAGTTCTTTAATTACCGCAACCTCACGGACAATCGTTGGTCGGCCTAACGGATAACGTACGGAATGAAACAGAAGATGCGTCATGCGCTTTACATACAGCTTTTTGCCGTTGCGCTCGACGCACTGCAcccccccc   >  2:1137395/1‑284 (MQ=255)
                                                                                                                                                                                                                                                                                        ||||                                                                                                                                                                                                                                                                                   
TGGCGTAGTAATACGCTTTCACCT‑GCTCCCAGTCCGCTTTGGGGATTGGCTCCAGATATTTTTCCAGCTGGCGGAAGTCATGATTAATCGCTTTATCGCGACGCAAGCGGCGACGACTTTTCTCCAGGTCAAGAAAACCAGCTTCTGCATTACCTTCTG‑TTTTCACATAGATATGGCGAACATAACAACAGCCATGCT‑GACGATTAATGCTATGCATTTTCTTAAACGCCAGCGCCACTGCTTTCAACATGGCTTGCCGTACTTCGTCAGAATAAGGGC‑TTACTGCATGCTGGGCATACCAGTCAGCAATGCTGATGAACCCCGCCATATCTTCAGTCACCAGCAACGCTCGCCATTCACCCTCAATTTTCACCGCTTCACCAAAAACGATCTTCGGCACGATGACACCGGCCCGTTCCAGTTCTTTAATTACCGCAACCTCACGGACAATCGTTGGTCGGCCGAACGGATAACGTACGGAATGAAACAGATGATGCGTCATGCGCTTTACATACAGCTTTTTGCCGTTGCGCTCGACGCATTGCACCCCGCTCA  >  CP042583/1920086‑1920640

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A