Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
730 |
35.1 |
2107516 |
91.4% |
1926269 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,571,289 |
Δ1 bp |
coding (31/1974 nt) |
glgX ← |
limit dextrin alpha‑1,6‑glucohydrolase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,571,286 | 0 | G | . | 100.0%
| 203.1
/ NA
| 48 | coding (34/1974 nt) | glgX | limit dextrin alpha‑1,6‑glucohydrolase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (29/19); total (29/19) |
AAAGACACACAGTTCTACCCGCTCGGCATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGAGGGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTGGCCAGCGGTGGTA > NC_000913/3571206‑3571359
|
aaaGACACACAGTTCTACCCGCTCGGCATGAGCGGAGAAAAGTGTGAAGCTGACGCCCTGACCGTCGTAATGCGCGCCGAg > 2:688450/1‑81 (MQ=255)
aGACACACAGTTCTACCCGCTCGGCATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGAggg < 2:688404/81‑1 (MQ=255)
cacacaGTTCTACCCGCTCGGCATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGAgggagc < 1:688406/81‑4 (MQ=255)
gTTCTACCCGCTCGGCATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGA‑GGGAGCGGGttt < 2:688407/81‑1 (MQ=255)
ttCTACCCGCTCGGCATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGA‑GGGAGCGGGTTTg < 2:688408/81‑1 (MQ=255)
tCTACCCGCTCGGCATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGA‑GGGAGCGGGTTTGc > 2:688454/1‑81 (MQ=255)
tCTACCCGCTCGGCATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGA‑GGGAGCGGGTTTGc > 2:688457/1‑81 (MQ=255)
cTACCCGCTCGGCATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGA‑GGGAGCGGGTTTGc < 1:688409/80‑1 (MQ=255)
aCCCGCTCGGCATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGA‑GGGAGCGGGTTTGCCaa > 2:688458/1‑81 (MQ=255)
cccGCTCGGCATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGA‑GGGAGCGGGTTTGcc < 1:688410/78‑1 (MQ=255)
cGCTCGGCATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGA‑GGGAGCGGGTTTGCCAATgg < 1:688411/81‑1 (MQ=255)
gCTCGGCATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGA‑GGGAGCGGGTTTGCCAATGGc > 2:688459/1‑81 (MQ=255)
gCTCGGCATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGA‑GGGAGCGGGTTTGCCAATGGc > 1:688471/1‑81 (MQ=255)
ggCATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGA‑GGGAGCGGGTTTGCCAATGGCGAGt > 1:688476/1‑81 (MQ=255)
cATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGA‑GGGAGCGGGTTTGCCAATGGCGAGTtg > 2:688486/1‑81 (MQ=255)
aTGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGA‑GGGAGCGGGTTTGCCAATGGCGAGTtgt < 1:688412/81‑1 (MQ=255)
aGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGA‑GGGAGCGGGTTTGCCAATGGCGAGTTgtgt < 1:688413/80‑1 (MQ=255)
gagaAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGA‑GGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTc > 2:688496/1‑81 (MQ=255)
gagaAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGA‑GGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTc < 1:688414/81‑1 (MQ=255)
gaAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGA‑GGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTg < 1:688415/81‑1 (MQ=255)
aaaGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGA‑GGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGcc > 2:688477/1‑81 (MQ=255)
aaaGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGA‑GGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGcc < 2:688416/81‑1 (MQ=255)
aaaGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGA‑GGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGcc > 1:688481/1‑81 (MQ=255)
tgAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGA‑GGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCg > 2:688515/1‑80 (MQ=255)
gAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGA‑GGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGaa > 2:688465/1‑81 (MQ=255)
gAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGA‑GGGAGCGGGTTTGCCAATGGCGAGTCGTGTCATCCTGCCTCCCGaa > 2:688489/1‑81 (MQ=255)
aaGTTGACGCCCTGACCGTCGTAATGCGCGCCGA‑GGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAAc < 2:688417/81‑1 (MQ=255)
aCGCCCTGACCGTCGTAATGCGCGCCGA‑GGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAAccagcca < 2:688419/81‑1 (MQ=255)
aCGCCCTGACCGTCGTAATGCGCGCCGA‑GGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAAccagcca < 1:688418/81‑1 (MQ=255)
aCGCCCTGACCGTCGTAATGCGCGCCGA‑GGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAAccagc > 1:688482/1‑79 (MQ=255)
aCGCCCTGACCGTCGTAATGCGCGCCGA‑GGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAAccagc > 2:688470/1‑79 (MQ=255)
cGCCCTGACCGTCGTAATGCGCGCCGA‑GGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAAccagccag < 1:688420/81‑1 (MQ=255)
gCCCTGACCGTCGTAATGCGCGCCGA‑GGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAAccagc > 1:688485/1‑77 (MQ=255)
gCCCTGACCGTCGTAATGCGCGCCGA‑GGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAAccagc > 2:688503/1‑77 (MQ=255)
gCCCTGACCGTCGTAATGCGCGCCGA‑GGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAAccagc > 2:688494/1‑77 (MQ=255)
cTGACCGTCGTAATGCGCGCCGA‑GGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAg > 1:688508/1‑81 (MQ=255)
gACCGTCGTAATGCGCGCCGA‑GGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTg > 2:688518/1‑81 (MQ=255)
gACCGTCGTAATGCGCGCCGA‑GGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTg > 2:688492/1‑81 (MQ=255)
gACCGTCGTAATGCGCGCCGA‑GGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTg > 2:688472/1‑81 (MQ=255)
aCCGTCGTAATGCGCGCCGA‑GGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTg < 2:688421/80‑1 (MQ=255)
cgtcgtAATGCGCGCCGA‑GGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTGGc > 2:688484/1‑80 (MQ=255)
cgtcgtAATGCGCGCCGA‑GGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTGGc > 2:688510/1‑80 (MQ=255)
gtcgtAATGCGCGCCGA‑GGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTGGc > 1:688474/1‑79 (MQ=255)
gtcgtAATGCGCGCCGA‑GGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTGGc > 2:688495/1‑79 (MQ=255)
gtcgtAATGCGCGCCGA‑GGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTGGCCa < 1:688422/81‑1 (MQ=255)
cgtAATGCGCGCCGA‑GGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTGGCCAGc > 1:688491/1‑81 (MQ=255)
aaTGCGCGCCGA‑GGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGTCTCCCGAACCAGCCAGATAGTGGCCAGCggt > 2:688502/1‑81 (MQ=255)
aTGCGCGCCGA‑GGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTGGCCAGCggtg < 1:688423/81‑1 (MQ=255)
tGCGCGCCGA‑GGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTGGCCAGCggtgg < 2:688424/81‑1 (MQ=255)
gcgcgcCGA‑GGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTGGCCAGCggtgg > 1:688487/1‑80 (MQ=255)
cgcgcCGA‑GGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTGGCCAGCGGTGGTa < 1:688425/81‑1 (MQ=255)
|
AAAGACACACAGTTCTACCCGCTCGGCATGAGCGGAGAAAAGTGTGAAGTTGACGCCCTGACCGTCGTAATGCGCGCCGAGGGGAGCGGGTTTGCCAATGGCGAGTTGTGTCATTCTGCCTCCCGAACCAGCCAGATAGTGGCCAGCGGTGGTA > NC_000913/3571206‑3571359
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
