Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A2 F48 I1 R1	45	83.3	2696702	99.2%	2675128	139.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,434,110	G→T	intergenic (‑86/‑3)	qorB ← / → ytfH	NAD(P)H:quinone oxidoreductase/putative transcriptional regulator YtfH

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,434,110	0	G	T	100.0%	240.9 / NA	67	intergenic (‑86/‑3)	qorB/ytfH	NAD(P)H:quinone oxidoreductase/putative transcriptional regulator YtfH
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (34/33); total (34/33)

TTCAATAACATAGTGACCAAGTTGGCCAGTGGCACCAGTAATAGCGATCATGGGAAGTCTCCATCGTTTTGTCTTGTGTTTAAATACGCTAACACCTAAACTTACTTTTAGTAAGTACGTACAAAAAGGTAAGTATGAAATGAGTCAGGTTAGCCTGTCGCAACAACTGAAAGAGGGTAATCTCTTTGCGGAACAGTGCCCGTCGCGCGAGGTGTTGAAACACGTCACCAGCCGTTGGGGGGTGTTGATTCTGGTGGCGCTACGCGAAGGTA  >  NC_000913/4433974‑4434245

ttCAATAACATAGTGACCAAGTTGGCCAGTGGCACCAGTAATAGCGATCATGGGAAGTCTCCATCGTTTTGTCTTGTGTTTAAATACGCTAACACCTAAACTTACTTTTAGTAAGTACGTACAAAAAGGTAAGTATTaaa                                                                                                                                      >  1:792062/1‑140 (MQ=255)

    aTAACATAGTGACCAAGTTGGCCAGTGGCACCAGTAATAGCGATCATGGGAAGTCTCCATCGTTTTGTCTTGTGTTTAAATACGCTAACACCTAAACTTACTTTTAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAg                                                                                                                                  <  1:972946/140‑1 (MQ=255)

    aTAACATAGTGACCAAGTTGGCCAGTGGCACCAGTAATAGCGATCATGGGAAGTCTCCATCGTTTTGTCTTGTGTTTAAATACGCTAACACCTAAACTTACTTTTAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAg                                                                                                                                  <  2:792062/140‑1 (MQ=255)

           aGTGACCAAGTTGGCCAGTGGCACCAGTAATAGCGATCATGGGAAGTCTCCATCGTTTTGTCTTGTGTTTAAATACGCTAACACCTAAACTTACTTTTAGTAAGTACGTACAAAAAGGTAAGTATTaaa                                                                                                                                      >  1:1167790/1‑129 (MQ=255)

           aGTGACCAAGTTGGCCAGTGGCACCAGTAATAGCGATCATGGGAAGTCTCCATCGTTTTGTCTTGTGTTTAAATACGCTAACACCTAAACTTACTTTTAGTAAGTACGTACAAAAAGGTAAGTATTaaa                                                                                                                                      <  2:1167790/129‑1 (MQ=255)

           aGTGACCAAGTTGGCCAGTGGCACCAGTAATAGCGATCATGGGAAGTCTCCATCGTTTTGTCTTGTGTTTAAATACGCTAACACCTAAACTTACTTTTAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAGTCAGGtt                                                                                                                           >  2:999599/1‑140 (MQ=255)

           aGTGACCAAGTTGGCCAGTGGCACCAGTAATAGCGATCATGGGAAGTCTCCATCGTTTTGTCTTGTGTTTAAATACGCTAACACCTAAACTTACTTTTAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAGTCAGGtt                                                                                                                           >  1:1325421/1‑140 (MQ=255)

           aGTGACCAAGTTGGCCAGTGGCACCAGTAATAGCGATCATGGGAAGTCTCCATCGTTTTGTCTTGTGTTTAAATACGCTAACACCTAAACTTACTTTTAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAGTCAGGtt                                                                                                                           >  2:73963/1‑140 (MQ=255)

                   aGTTGGCCAGTGGCACCAGTAATAGCGATCATGGGAAGTCTCCATCGTTTTGTCTTGTGTTTAAATACGCTAACACCTAAACTTACTTTTAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCTGTc                                                                                                                   >  2:204174/1‑140 (MQ=255)

                   aGTTGGCCAGTGGCACCAGTAATAGCGATCATGGGAAGTCTCCATCGTTTTGTCTTGTGTTTAAATACGCTAACACCTAAACTTACTTTTAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCTGTc                                                                                                                   >  1:1334412/1‑140 (MQ=255)

                    gTTGGCCAGTGGCACCAGTAATAGCGATCATGGGAAGTCTCCATCGTTTTGTCTTGTGTTTAAATACGCTAACACCTAAACTTACTTTTAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCTGTCg                                                                                                                  <  2:371114/140‑1 (MQ=255)

                      tGGCCAGTGGCACCAGTAATAGCGATCATGGGAAGTCTCCATCGTTTTGTCTTGTGTTTAAATACGCTAACACCTAAACTTACTTTTAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCTGTCGca                                                                                                                <  2:1244708/140‑1 (MQ=255)

                       ggCCAGTGGCACCAGTAATAGCGATCATGGGAAGTCTCCATCGTTTTGTCTTGTGTTTAAATACGCTAACACCTAAACTTACTTTTAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCTGTCGcaa                                                                                                               <  2:1302498/140‑1 (MQ=255)

                       ggCCAGTGGCACCAGTAATAGCGATCATGGGAAGTCTCCATCGTTTTGTCTTGTGTTTAAATACGCTAACACCTAAACTTACTTTTAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCTGTCGcaa                                                                                                               >  1:805343/1‑140 (MQ=255)

                         ccAGTGGCACCAGTAATAGCGATCATGGGAAGTCTCCATCGTTTTGTCTTGTGTTTAAATACGCTAACACCTAAACTTACTTTTAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCTGTCGcaaca                                                                                                             <  2:1260910/140‑1 (MQ=255)

                          cAGTGGCACCAGTAATAGCGATCATGGGAAGTCTCCATCGTTTTGTCTTGTGTTTAAATACGCTAACACCTAAACTTACTTTTAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCTGTCGcaacaa                                                                                                            <  1:73963/140‑1 (MQ=255)

                             tGGCACCAGTAATAGCGATCATGGGAAGTCTCCATCGTTTTGTCTTGTGTTTAAATACGCTAACACCTAAACTTACTTTTAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCTGTCGCAACAACTg                                                                                                         >  2:968676/1‑140 (MQ=255)

                                 aCCAGTAATAGCGATCATGGGAAGTCTCCATCGTTTTGTCTTGTGTTTAAATACGCTAACACCTAAACTTACTTTTAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCTGTCGCAACAACTGAAag                                                                                                     <  1:190231/140‑1 (MQ=255)

                                 aCCAGTAATAGCGATCATGGGAAGTCTCCATCGTTTTGTCTTGTGTTTAAATACGCTAACACCTAAACTTACTTTTAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCTGTCGCAACAACTGAAag                                                                                                     <  1:586571/140‑1 (MQ=255)

                                       aaTAGCGATCATGGGAAGTCTCCATCGTTTTGTCTTGTGTTTAAATACGCTAACACCTAAACTTACTTTTAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCTGTCGCAACAACTGAAAGAGGGTa                                                                                               >  2:1157248/1‑140 (MQ=255)

                                              aTCATGGGAAGTCTCCATCGTTTTGTCTTGTGTTTAAATACGCTAACACCTAAACTTACTTTTAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCTGTCGCAACAACTGAAAGAGGGTAATCTCtt                                                                                        >  2:201466/1‑140 (MQ=255)

                                              aTCATGGGAAGTCTCCATCGTTTTGTCTTGTGTTTAAATACGCTAACACCTAAACTTACTTTTAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCTGTCGCAACAACTGAAAGAGGGTAATCTCtt                                                                                        >  1:1270564/1‑140 (MQ=255)

                                               tCATGGGAAGTCTCCATCGTTTTGTCTTGTGTTTAAATACGCTAACACCTAAACTTACTTTTAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCTGTCGCAACAACTGAAAGAGGGTAATCTCttt                                                                                       >  1:983907/1‑140 (MQ=255)

                                                cATGGGAAGTCTCCATCGTTTTGTCTTGTGTTTAAATACGCTAACACCTAAACTTACTTTTAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCTGTCGCAACAACTGAAAGAGGGTAATCTCTTTg                                                                                      >  1:311644/1‑140 (MQ=255)

                                                cATGGGAAGTCTCCATCGTTTTGTCTTGTGTTTAAATACGCTAACACCTAAACTTACTTTTAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCTGTCGCAACAACTGAAAGAGGGTAATCTCTTTg                                                                                      <  1:536302/140‑1 (MQ=255)

                                                cATGGGAAGTCTCCATCGTTTTGTCTTGTGTTTAAATACGCTAACACCTAAACTTACTTTTAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCCGTCGCAACAACTGAAAGAGGGTAATCTCTTTg                                                                                      >  1:544533/1‑140 (MQ=255)

                                                     gAAGTCTCCATCGTTTTGTCTTGTGTTTAAATACGCTAACACCTAAACTTACTTTTAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCTGTCGCAACAACTGAAAGAGGGTAATCTCTTTGCGGaa                                                                                 <  2:1270564/140‑1 (MQ=255)

                                                           tcCATCGTTTTGTCTTGTGTTTAAATACGCTAACACCTAAACTTACTTTTAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCTGTCGCAACAACTGAAAGAGGGTAATCTCTTTGCGGAAGAGTGc                                                                           >  2:828942/1‑140 (MQ=255)

                                                           tcCATCGTTTTGTCTTGTGTTTAAATACGCTAACACCTAAACTTACTTTTAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCTGTCGCAACAACTGAAAGAGGGTAATCTCTTTGCGGAACAGTGc                                                                           >  2:441328/1‑140 (MQ=255)

                                                           tcCATCGTTTTGTCTTGTGTTTAAATACGCTAACACCTAAACTTACTTTTAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCTGTCGCAACAACTGAAAGAGGGTAATCTCTTTGCGGAACAGTGc                                                                           >  2:329407/1‑140 (MQ=255)

                                                           tcCATCGTTTTGTCTTGTGTTTAAATACGCTAACACCTAAACTTACTTTTAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCTGTCGCAACAACTGAAAGAGGGTAATCTCTTTGCGGAACAGTGc                                                                           >  1:466334/1‑140 (MQ=255)

                                                                   tttGTCTTGTGTTTAAATACGCTAACACCTAAACTTACTTTTAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCTGTCGCAACAACTGAAAGAGGGTAATCTCTTTGCGGAACAGTGCCCGTcgcg                                                                   <  2:1334412/140‑1 (MQ=255)

                                                                    ttGTCTTGTGTTTAAATACGCTAACACCTAAACTTACTTTTAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCTGTCGCAACAACTGAAAGAGGGTAATCTCTTTGCGGAACAGTGCCCGTcgcgc                                                                  <  1:1157248/140‑1 (MQ=255)

                                                                     tGTCTTGTGTTTAAATACGCTAACACCTAAACTTACTTTTAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCTGTCGCAACAACTGAAAGAGGGTAATCTCTTTGCGGAACAGTGCCCGTcgcgcg                                                                 <  1:201466/140‑1 (MQ=255)

                                                                     tGTCTTGTGTTTAAATACGCTAACACCTAAACTTACTTTTAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCTGTCGCAACAACTGAAAGAGGGTAATCTCTTTGCGGAACAGTGCCCGTcgcgcg                                                                 <  2:311644/140‑1 (MQ=255)

                                                                      gTCTTGTGTTTAAATACGCTAACACCTAAACTTACTTTTAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAGTCAGGTTAGGCTGTCGCAACAACTGAAAGAGGGTAATCTCTTTGCGGAACAGTGCCCGTCGCGCGa                                                                <  1:999599/140‑1 (MQ=255)

                                                                                 aaaTACGCTAACACCTAAACTTACTTTTAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCTGTCGCAACAACTGAAAGAGGGTAATCTCTTTGCGGAACAGTGCCCGTCGCGCGAGGTGTTGAAac                                                     <  1:441328/140‑1 (MQ=255)

                                                                                   aTACGCTAACACCTAAACTTACTTTTAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCTGTCGCAACAACTGAAAGAGGGTAATCTCTTTGCGGAACAGTGCCCGTCGCGCGAGGTGTTGAAacac                                                   <  1:329407/140‑1 (MQ=255)

                                                                                      cGCTAACACCTAAACTTACTTTTAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCTGTCGCAACAACTGAAAGAGGGTAATCTCTTTGCGGAACAGTGCCCGTCGCGCGAGGTGTTGAAACACGTc                                                >  2:257042/1‑140 (MQ=255)

                                                                                        cTAACACCTAAACTTACTTTTAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCTGTCGCAACAACTGAAAGAGGGTAATCTCTTTGCGGAACAGTGCCCGTCGCGCGAGGTGTTGAAACACGTCAc                                              >  2:623399/1‑140 (MQ=255)

                                                                                        cTAACACCTAAACTTACTTTTAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCTGTCGCAACAACTGAAAGAGGGTAATCTCTTTGCGGAACAGTGCCCGTCGCGCGAGGTGTTGAAACACGTCAc                                              >  1:77146/1‑140 (MQ=255)

                                                                                         tAACACCTAAACTTACTTTTAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCTGTCGCAACAACTGAAAGAGGGTAATCTCTTTGCGGAACAGTGCCCGTCGCGCGAGGTGTTGAAACACGTCAcc                                             <  2:466334/140‑1 (MQ=255)

                                                                                         tAACACCTAAACTTACTTTTAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCTGTCGCAACAACTGAAAGAGGGTAATCTCTTTGCGGAACAGTGCCCGTCGCGCGAGGTGTTGAAACACGTCAcc                                             <  2:1325421/140‑1 (MQ=255)

                                                                                          aaCACCTAAACTTACTTTTAGTAAGTACGTCCAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCTGTCGCAACAACTGAAAGAGGGTAATCTCTTTGCGGAACAGTGCCCGTCGCGCGAGGTGTTGAAACACGTCACCa                                            <  1:623399/140‑1 (MQ=255)

                                                                                           acacCTAAACTTACTTTTAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCTGTCGCAACAACTGAAAGAGGGTAATCTCTTTGCGGATCAGTGCCCGTCGCGCGAGGTGTTGAAACACGTCACCAg                                           <  1:204174/140‑1 (MQ=255)

                                                                                           acacCTAAACTTACTTTTAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCTGTCGCAACAACTGAAAGAGGGTAATCTCTTTGCGGAACAGTGCCCGTCGCGCGAGGTGTTGAAACACGTCACCAg                                           <  1:861994/140‑1 (MQ=255)

                                                                                                tAAACTTACTTTTAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCCGTCGCAACAACTGAAAGAGGGTAATCTCTTTGCGGAACAGTGCCCGTCGCGCGAGGTGTTGAAACACGTCACCAGCCGtt                                      <  2:544533/140‑1 (MQ=255)

                                                                                                   acttacttTTAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCTGTCGCAACAACTGAAAGAGGGTAATCTCTTTGCGGAACAGTGCCCGTCGCGCGAGGTGTTGAAACACGTCACCAGCCGTTggg                                   <  2:722059/140‑1 (MQ=255)

                                                                                                       acttTTAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCTGTCGCAACAACTGAAAGAGGGTAATCTCTTTGCGGAACAGTGCCCGTCGCGCGAGGTGTTGAAACACGTCACCAGCCGTTGGGGGgt                               >  1:1272788/1‑140 (MQ=255)

                                                                                                       acttTTAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCTGTCGCAACAACTGAAAGAGGGTAATCTCTTTGCGGAACAGTGCCCGTCGCGCGAGGTGTTGAAACACGTCACCAGCCGTTGGGGGgt                               >  1:829125/1‑140 (MQ=255)

                                                                                                       acttTTAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCTGTCGCAACAACTGAAAGAGGGTAATCTCTTTGCGGAACAGTGCCCGTCGCGCGAGGTGTTGAAACACGTCACCAGCCGTTGGGGGgt                               >  1:382419/1‑140 (MQ=255)

                                                                                                       acttTTAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCTGTCGCAACAACTGAAAGAGGGTAATCTCTTTGCGGAACAGTGCCCGTCGCGCGAGGTGTTGAAACACGTCACCAGCCGTTGGGGGgt                               >  1:1104265/1‑140 (MQ=255)

                                                                                                        cttTTAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCTGTCGCAACAACTGAAAGAGGGTAATCTCTTTGCGGAACAGTGCCCGTCGCGCGAGGTGTTGAAACACGTCACCAGCCGTTGGGGGgtg                              <  2:805343/140‑1 (MQ=255)

                                                                                                        attttAGTAAGTACGTACAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCTGTCGCAACAACTGAAAGAGGGTAATCTCTTTGCGGAACAGTGCCCGTCGCGCGAGGTGTTGAAACACGTCACCAGCCGTTGGGGGgtg                              <  2:382419/139‑1 (MQ=255)

                                                                                                             agtaagtaCGTACAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCTGTCGCAACAACTGAAAGAGGGTAATCTCTTTGCGGAACAGTGCCCGTCGCGCGAGGTGTTGAAACACGTCACCAGCCGTTGGGGGGTGTTGAt                         >  2:273870/1‑140 (MQ=255)

                                                                                                                   tacgtacAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCTGTCGCAACAACTGAAAGAGGGTAATCTCTTTGCGGAACAGTGCCCGTCGCGCGAGGTGTTGAAACACGTCACCAGCCGTTGGGGGGTGTTGATTCtggt                   >  2:785014/1‑140 (MQ=255)

                                                                                                                     cgtacAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCTGTCGCAACAACTGAAAGAGGGTAATCTCTTTGCGGAACAGTGCCCGTCGCGCGAGGTGTTGAAACACGTCACCAGCCGTTGGGGGGTGTTGATTCtggtgg                 <  1:269891/140‑1 (MQ=255)

                                                                                                                       tacAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCTGTCGCAACAACTGAAAGAGGGTAATCTCTTTGCGGAACAGTGCCCGTCGCGCGAGGTGTTGAAACACGTCACCAGCCGTTGGGGGGTGTTGATTCTGGTGgcg               <  1:641401/140‑1 (MQ=255)

                                                                                                                       tacAAAAAGGTAAGTATTAAATGAGTCAGGTTAGCCTGTCGCAACAACTGAAAGAGGGTAATCTCTTTGCGGAACAGTGCCCGTCGCGCGAGGTGTTGAAACACGTCACCAGCCGTTGGGGGGTGTTGATTCTGGTGgcg               >  2:641401/1‑140 (MQ=255)

                                                                                                                          aaaaaGGTAAGTATTAAATGAGTCAGGTTAGCCTGTCGCAACAACTGAAAGAGGGTAATCTCTTTGCGGAACAGTGCCCGTCGCGCGAGGTGTTGAAACACGTCACCAGCCGTTGGGGGGTGTTGATTCTGGTGGCGCTa            <  1:566469/140‑1 (MQ=255)

                                                                                                                            aaaGGTAAGTATTAAATGAGTCAGGTTAGCCTGTCGCAACAACTGAAAGAGGGTAATCTCTTTGCGGAACAGTGCCCGTCGCGCGAGGTGTTGAAACACGTCACCAGCCGTTGGGGGGTGTTGATTCTGGTGGCGCTAcg          >  2:1044633/1‑140 (MQ=255)

                                                                                                                             aaGGTAAGTATTAAATGAGTCAGGTTAGCCTGTCGCAACATCTGAAAGAGGGTAATCTCTTTGCGGAACAGTGCCCGTCGCGCGAGGTGTTGAAACACGTCACCAGCCGTTGGGGGGTGTTGATTCTGGTGGCGCTAcgc         >  1:505834/1‑140 (MQ=255)

                                                                                                                                  aaGTATTAAATGAGTCAGGTTAGCCTGTCGCAACAACTGAAAGAGGGTAATCTCTTTGCGGAACAGTGCCCGTCGCGCGAGGTGTTGAAACACGTCACCAGCCGTTGGGGGGTGTTGATTCTGGTGGCGCTACGCGAAgt    >  2:1019001/1‑139 (MQ=255)

                                                                                                                                  aaGTATTAAATGAGTCAGGTTAGCCTGTCGCAACAACTGAAAGAGGGTAATCTCTTTGCGGAACAGTGCCCGTCGCGCGAGGTGTTGAAACACGTCACCAGCCGTTGGGGGGTGTTGATTCTGGTGGCGCTACGCGAAgg    <  1:968676/140‑1 (MQ=255)

                                                                                                                                   aGTATTAAATGAGTCAGGTTAGCCTGTCGCAACAACTGAAAGAGGGTAATCTCTTTGCGGAACAGTGCCCGTCGCGCGAGGTGTTGAAACACGTCACCAGCCGTTGGGGGGTGTTGATTCTGGTGGCGCTACGCGAAGGt   >  1:64630/1‑140 (MQ=255)

                                                                                                                                    gTATTAAATGAGTCAGGTTAGCCTGTCGCAACATCTGAAAGAGGGTAATCTCTTTGCGGAACAGTGCCCGTCGCGCGAGGTGTTGAAACACGTCACCAGCCGTTGGGGGGTGTTGATTCTGGTGGCGCTACGCGAAGGTa  <  2:505834/140‑1 (MQ=255)

                                                                                                                                    gTATTAAATGAGTCAGGTTAGCCTGTCGCAACAACTGAAAGAGGGTAATCTCTTTGCGGAACAGTGCCCGTCGCGCGAGGTGTTGAAACACGTCACCAGCCGTTGGGGGGTGTTGATTCTGGTGGCGCTACGCGAAGGTa  >  1:76525/1‑140 (MQ=255)

TTCAATAACATAGTGACCAAGTTGGCCAGTGGCACCAGTAATAGCGATCATGGGAAGTCTCCATCGTTTTGTCTTGTGTTTAAATACGCTAACACCTAAACTTACTTTTAGTAAGTACGTACAAAAAGGTAAGTATGAAATGAGTCAGGTTAGCCTGTCGCAACAACTGAAAGAGGGTAATCTCTTTGCGGAACAGTGCCCGTCGCGCGAGGTGTTGAAACACGTCACCAGCCGTTGGGGGGTGTTGATTCTGGTGGCGCTACGCGAAGGTA  >  NC_000913/4433974‑4434245

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A