Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F13 I1 R1 111 382.4 18081076 99.7% 18026832 98.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,945,682 A→T I54N (ATT→AAT)  tcdA ← tRNA threonylcarbamoyladenosine dehydratase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,945,6820AT100.0% 1446.9 / NA 346I54N (ATT→AAT) tcdAtRNA threonylcarbamoyladenosine dehydratase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base T (176/170);  total (176/170)

Only 100 of 346 total aligned reads displayed.

CCGCTTTTGCCAGCCCAACGTTATCGCGCAGGGCATGAATTTGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCAATCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGACACCACCGATACCAACCACACAAATATGCGCGTCAGCAAACAGTTGCAACGCTTTTTC  >  NC_000913/2945584‑2945779
                                                                                                  |                                                                                                 
ccGCTTTTGCCAGCCCAACGTTATCGCGCAGGGCATGAATTTGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTc                                                                                                 >  1:5651203/1‑101 (MQ=255)
 cGCTTTTGCCAGCCCAACGTTATCGCGCAGGGCATGAATTTGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTcc                                                                                                <  2:5650828/101‑1 (MQ=255)
  gCTTTTGCCAGCCCAACGTTATCGCGCAGGGCATGAATTTGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTccc                                                                                               >  2:5651205/1‑101 (MQ=255)
   cTTTTGCCAGCCCAACGTTATCGCGCAGGGCATGAATTTGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTcccc                                                                                              >  1:5651210/1‑101 (MQ=255)
     tttGCCAGCCCAACGTTATCGCGCAGGGCATGAATTTGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCg                                                                                             <  1:5650480/100‑1 (MQ=255)
     tttGCCAGCCCAACGTTATCGCGCAGGGCATGAATTTGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGt                                                                                            >  1:5651213/1‑101 (MQ=255)
     tttGCCAGCCCAACGTTATCGCGCAGGGCATGAATTTGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGt                                                                                            >  2:5651214/1‑101 (MQ=255)
       tGCCAGCCCAACGTTATCGCGCAGGGCATGAATTTGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTgc                                                                                          <  1:5650705/101‑1 (MQ=255)
         ccAGCCCAACGTTATCGCGCAGGGCATGAATTTGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTgcgc                                                                                        >  1:5651222/1‑101 (MQ=255)
          cAGCCCAACGTTATCGCGCAGGGCATGAATTTGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTgcgcg                                                                                       >  2:5651225/1‑101 (MQ=255)
           aGCCCAACGTTATCGCGCAGGGCATGAATTTGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTgcgcgc                                                                                      <  2:5650655/101‑1 (MQ=255)
           aGCCCAACGTTATCGCGCAGGGCATGAATTTGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTgcgcgc                                                                                      >  1:5651226/1‑101 (MQ=255)
              ccAACGTTATCGCGCAGGGCATGAATTTGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAg                                                                                   >  1:5651231/1‑101 (MQ=255)
              ccAACGTTATCGCGCAGGGCATGAATTTGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAg                                                                                   <  2:5650582/101‑1 (MQ=255)
              ccAACGTTATCGCGCAGGGCATGAATTTGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAg                                                                                   >  2:5651234/1‑101 (MQ=255)
                aaCGTTATCGCGCAGGGCATGAATTTGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAgcg                                                                                 >  1:5651238/1‑101 (MQ=255)
                 aCGTTATCGCGCAGGGCATGAATTTGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAgcgc                                                                                <  2:5650618/101‑1 (MQ=255)
                  cGTTATCGCGCAGGGCATGAATTTGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCt                                                                               >  2:5651245/1‑101 (MQ=255)
                  cGTTATCGCGCAGGGCATGAATTTGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCt                                                                               >  1:5651244/1‑101 (MQ=255)
                   gTTATCGCGCAGGGCATGAATTTGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCtt                                                                              >  1:5651254/1‑101 (MQ=255)
                   gTTATCGCGCAGGGCATGAATTTGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCtt                                                                              >  1:5651248/1‑101 (MQ=255)
                    ttATCGCGCAGGGCATGAATTTGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTc                                                                             >  2:5651255/1‑101 (MQ=255)
                     tATCGCGCAGGGCATGAATTTGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTcc                                                                            >  1:5651261/1‑101 (MQ=255)
                     tATCGCGCAGGGCATGAATTTGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTcc                                                                            <  1:5650764/101‑1 (MQ=255)
                      aTCGCGCAGGGCATGAATTTGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTccg                                                                           >  2:5651263/1‑101 (MQ=255)
                       tCGCGCAGGGCATGAATTTGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTc                                                                             >  1:2096405/1‑98 (MQ=255)
                        cgcgCAGGGCATGAATTTGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTccgcc                                                                         >  2:5651268/1‑101 (MQ=255)
                         gcgcAGGGCATGAATTTGCCGATTGGTATTGGTGAGGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTccgccg                                                                        >  1:5651272/1‑101 (MQ=255)
                          cgcAGGGCATGAATTTGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTg                                                                                           >  1:5651276/1‑81 (MQ=255)
                          cgcAGGGCATGAATTTGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCcgccgc                                                                       <  1:5650440/101‑1 (MQ=255)
                           gcAGGGCATGAATTTGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCgccgcc                                                                      <  2:5650572/101‑1 (MQ=255)
                            cAGGGCATGAATTTGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGccc                                                                     >  2:5651277/1‑101 (MQ=255)
                             aGGGCATGAATTTGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCTCGTGCGCGCCAGCGCTTCCGCCGCCCa                                                                    <  1:5650732/101‑1 (MQ=255)
                             aGGGCATGAATTTGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCcgccgc                                                                       <  2:5650671/98‑1 (MQ=255)
                             aGGGCATGAATTTGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCa                                                                    <  2:5650726/101‑1 (MQ=255)
                             aGGGCATGAATTTGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCa                                                                    <  2:5650640/101‑1 (MQ=255)
                              gggCATGAATTTGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAg                                                                   >  2:5651281/1‑101 (MQ=255)
                               ggCATGAATTTGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAgg                                                                  <  1:5650685/101‑1 (MQ=255)
                                gCATGAATTTGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGa                                                                 >  2:5651286/1‑101 (MQ=255)
                                  aTGAATTTGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGa                                                                 >  1:5651290/1‑99 (MQ=255)
                                  aTGAATTTGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAAc                                                               <  1:5650589/101‑1 (MQ=255)
                                   tGAATTTGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAAcc                                                              >  2:5651291/1‑101 (MQ=255)
                                    gAATTTGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCg                                                             >  2:5651295/1‑101 (MQ=255)
                                     aaTTTGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGa                                                            <  1:5650612/101‑1 (MQ=255)
                                      aTTTGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGac                                                           >  1:5651298/1‑101 (MQ=255)
                                      aTTTGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGac                                                           <  2:5650704/101‑1 (MQ=255)
                                      aTTTGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGac                                                           <  1:5650971/101‑1 (MQ=255)
                                       tttGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGaca                                                          <  1:5650812/101‑1 (MQ=255)
                                       tttGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGaca                                                          >  2:5651301/1‑101 (MQ=255)
                                         tGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGAcacc                                                        >  1:5651306/1‑101 (MQ=255)
                                           ccGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGAcaccac                                                      >  2:5651310/1‑101 (MQ=255)
                                            cGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGACaccacc                                                     <  1:5650562/101‑1 (MQ=255)
                                            cGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGACaccacc                                                     >  1:5651312/1‑101 (MQ=255)
                                             gATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGACACCACCg                                                    <  1:5650661/101‑1 (MQ=255)
                                             gATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGACACCACCg                                                    >  2:5651315/1‑101 (MQ=255)
                                              attggtattggtGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGACACCACCGa                                                   >  1:5651318/1‑101 (MQ=255)
                                               ttggtattggtGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGACACCACCGAt                                                  <  2:5650719/101‑1 (MQ=255)
                                                tggtattggtGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGACACCACCGATa                                                 <  1:5650872/101‑1 (MQ=255)
                                                 ggtattggtGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGACACCACCGATac                                                <  1:5650809/101‑1 (MQ=255)
                                                  gtattggtGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGACACCACCGATacc                                               <  2:5650842/101‑1 (MQ=255)
                                                    attggtGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGACACCACCGATaccaa                                             >  1:5651323/1‑101 (MQ=255)
                                                      tggtGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGACACCACCGATaccaacc                                           <  2:5650883/101‑1 (MQ=255)
                                                         tGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGACACCACCGATACCAACcaca                                        <  2:5650763/101‑1 (MQ=255)
                                                         tGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGACACCACCGATACCAACcaca                                        >  1:5651327/1‑101 (MQ=255)
                                                            cGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGACACCACCGATACCAACCACACaa                                     >  2:5651328/1‑101 (MQ=255)
                                                            cGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGACACCACCGATACCAACCACACaa                                     <  1:5650998/101‑1 (MQ=255)
                                                            cGCACACATCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGACACCACCGATACCAACCACACaa                                     <  1:5650918/101‑1 (MQ=255)
                                                              cacacaTCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGACACCACCGATACCAACCACACAAat                                   <  2:5650978/101‑1 (MQ=255)
                                                                cacaTCATCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGACACCACCGATACCAACCACACAAatat                                 <  1:5651071/101‑1 (MQ=255)
                                                                  catcatCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGACACCACCGATACCAACCACACAAATATgc                               >  1:5651334/1‑101 (MQ=255)
                                                                  catcatCCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGACACCACCGATACCAACCACACAAATATgc                               <  2:5650507/101‑1 (MQ=255)
                                                                      atcCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGACACCACCGATACCAACCACACAAATATGCGCGt                           <  2:5651018/101‑1 (MQ=255)
                                                                      atcCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGACACCACCGATACCAACCACACAAATATGCGCGt                           >  2:5651338/1‑101 (MQ=255)
                                                                       tcCATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGACACCACCGATACCAACCACACAAATATGCGCGTc                          <  1:5650915/101‑1 (MQ=255)
                                                                        ccATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGACACCACCGATACCAACCACACAAATATGCGCGTCa                         >  2:5651341/1‑101 (MQ=255)
                                                                         cATATCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGACACCACCGATACCAACCACACAAATATGCGCGTCAg                        <  2:5650605/101‑1 (MQ=255)
                                                                          atatCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGACACCACCGATACCAACCACACAAATATGCGCGTCAGc                       <  1:5650716/101‑1 (MQ=255)
                                                                          atatCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGACACCACCGATACCAACCACACAAATATGCGCGTCAGc                       >  1:5651344/1‑101 (MQ=255)
                                                                           tatCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGACACCACCGATACCAACCACACAAATATGCGCGTCAGCa                      >  2:5651347/1‑101 (MQ=255)
                                                                             tCGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGACACCACCGATACCAACCACACAAATATGCGCGTCAGCaaa                    <  1:5650829/101‑1 (MQ=255)
                                                                              cGATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGACACCACCGATACCAACCACACAAATATGCGCGTCAGCAAAc                   >  1:5651351/1‑101 (MQ=255)
                                                                               gATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGACACCACCGATACCAACCACACAAATATGCGCGTCAGCAAACa                  <  2:5650343/101‑1 (MQ=255)
                                                                               gATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGACACCACCGATACCAACCACACAAATATGCGCGTCAGCAAACa                  >  1:5651355/1‑101 (MQ=255)
                                                                               gATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGACACCACCGATACCAACCACACAAATATGCGCGTCAGCAAACa                  <  2:5650787/101‑1 (MQ=255)
                                                                               gATAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGACACCACCGATACCAACCACACAAATATGCGCGTCAGCAAACa                  >  2:5651356/1‑101 (MQ=255)
                                                                                aTAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGACACCACCGATACCAACCACACAAATATGCGCGTCAGCAAACAg                 <  2:5650750/101‑1 (MQ=255)
                                                                                 tAAGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGACACCACCGATACCAACCACACAAATATGCGCGTCAGCAAACAGt                >  1:5651360/1‑101 (MQ=255)
                                                                                  aaGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGccc                                                                     >  1:5651364/1‑47 (MQ=255)
                                                                                  aaGCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGACACCACCGATACCAACCACACAAATATGCGCGTCAGCAAACAGtt               <  2:5650802/101‑1 (MQ=255)
                                                                                    gCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGACACCACCGATACCAACCACACAAATATGCGCGTCGGCAAACAGTTGc             <  1:5650746/101‑1 (MQ=255)
                                                                                    gCGTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGACACCACCGATACCAACCACACAAATATGCGCGTCAGCAAACAGTTGc             <  2:5650470/101‑1 (MQ=255)
                                                                                      gTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGACACCACCGATACCAACCACACAAATATGCGCGTCAGCAAACAGTTGCaa           <  2:5650935/101‑1 (MQ=255)
                                                                                      gTGATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGACACCACCGATACCAACCACACAAATATGCGCGTCAGCAAACAGTTGCaa           >  2:5651370/1‑101 (MQ=255)
                                                                                        gATTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGACACCACCGATACCAACCACACAAATATGCGCGTCAGCAAACAGTTGCAACg         >  1:5651373/1‑101 (MQ=255)
                                                                                         aTTGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGACACCACCGATACCAACCACACAAATATGCGCGTCAGCAAACAGTTGCAACGc        <  2:5650552/101‑1 (MQ=255)
                                                                                          ttGCGCCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGACACCACCGATACCAACCACACAAATATGCGCGTCAGCAAACAGTTGCAACGCt       >  2:5651374/1‑101 (MQ=255)
                                                                                            gcgcCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGACACCACCGATACCAACCACACAAATATGCGCGTCAGCAAACAGTTGCAACGCttt     <  1:5650786/101‑1 (MQ=255)
                                                                                             cgcCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGACACCACCGATACCAACCACACAAATATGCGCGTCAGCAAACAGTTGCAACGCtttt    <  2:5650903/101‑1 (MQ=255)
                                                                                              gcCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAAcc                                                              >  1:5651379/1‑42 (MQ=255)
                                                                                              gcCATTCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGacac                                                         <  1:5651026/47‑1 (MQ=255)
                                                                                                  |                                                                                                 
CCGCTTTTGCCAGCCCAACGTTATCGCGCAGGGCATGAATTTGCCGATTGGTATTGGTGACGCACACATCATCCATATCGATAAGCGTGATTGCGCCAATCCCCGTGCGCGCCAGCGCTTCCGCCGCCCAGGAACCGACACCACCGATACCAACCACACAAATATGCGCGTCAGCAAACAGTTGCAACGCTTTTTC  >  NC_000913/2945584‑2945779

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A