Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1696	279.3	15874187	97.8%	15524954	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,281,515	A→G	R151R (CGT→CGC)	yejK ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,281,515	0	A	G	98.7%	736.1 / ‑1.2	240	R151R (CGT→CGC)	yejK	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (2/1); new base G (110/126); total (112/128)
Fisher's exact test for biased strand distribution p-value = 6.01e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.39e-01

Only 100 of 246 total aligned reads displayed.

GAAATCCGCCACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATACGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCAGGTTGCT  >  NC_000913/2281425‑2281604

aaaaTCCGCCCCTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGcg                                                                                         <  1:2373615/92‑1 (MQ=255)

      cGCCACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGcaac                                                                                   <  2:2611105/93‑1 (MQ=255)

       gCCACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGcaaca                                                                                  >  2:2548757/1‑93 (MQ=255)

       gCCACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGcaaca                                                                                  >  2:375990/1‑93 (MQ=255)

         cACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAat                                                                                >  1:5046019/1‑93 (MQ=255)

         cACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAat                                                                                >  1:6849993/1‑93 (MQ=255)

          aCTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAata                                                                               <  2:3911161/93‑1 (MQ=255)

          aCTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAata                                                                               >  1:2833362/1‑93 (MQ=255)

           cTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAatat                                                                              <  2:4228990/93‑1 (MQ=255)

           cTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAatat                                                                              <  1:4251178/93‑1 (MQ=255)

           cTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAatat                                                                              >  2:3253223/1‑93 (MQ=255)

            tttGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATc                                                                             <  2:1876987/93‑1 (MQ=255)

            tttGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATc                                                                             >  1:4027969/1‑93 (MQ=255)

            tttGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATc                                                                             <  2:6864908/93‑1 (MQ=255)

             ttGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATcc                                                                            <  1:6548880/93‑1 (MQ=255)

               gcgcCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGc                                                                          <  1:840539/93‑1 (MQ=255)

                cgcCCTGCTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCa                                                                         <  1:1906342/93‑1 (MQ=255)

                cgcCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCa                                                                         <  1:4767473/93‑1 (MQ=255)

                cgcCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCa                                                                         <  2:1678233/93‑1 (MQ=255)

                  cccTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCAtg                                                                       >  1:1187437/1‑93 (MQ=255)

                   ccTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCGtga                                                                      <  2:7747056/93‑1 (MQ=255)

                   ccTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCAtga                                                                      >  1:6876340/1‑93 (MQ=255)

                    cTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCAtgat                                                                     <  1:3852598/93‑1 (MQ=255)

                    cTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCAtgat                                                                     <  2:944239/93‑1 (MQ=255)

                     tACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCAtgatt                                                                    >  1:5164742/1‑93 (MQ=255)

                     tACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCAtgatt                                                                    <  2:1502310/93‑1 (MQ=255)

                     tACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCAtgatt                                                                    <  1:1013617/93‑1 (MQ=255)

                     tACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCAtgatt                                                                    >  1:2148398/1‑93 (MQ=255)

                     tACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCAtgatt                                                                    >  1:25135/1‑93 (MQ=255)

                      aCTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCAtgattg                                                                   >  1:2702255/1‑93 (MQ=255)

                      aCTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCAtgattg                                                                   >  2:2145864/1‑93 (MQ=255)

                       cTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCAtgattga                                                                  <  1:4911920/93‑1 (MQ=255)

                       cTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCAtgattga                                                                  >  2:5127950/1‑93 (MQ=255)

                       cTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTGTCCCATTCGGTTAAATCGAAGCGCGCAACAATATCCGCAtgagtga                                                                  >  1:7004593/1‑93 (MQ=255)

                        tCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCAtgattgat                                                                 >  2:492263/1‑93 (MQ=255)

                        tCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCAtgattgat                                                                 <  1:7193811/93‑1 (MQ=255)

                         cGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGata                                                                >  1:6231836/1‑93 (MQ=255)

                          gCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGatat                                                               <  2:6648928/93‑1 (MQ=255)

                          ccccTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGatat                                                               <  2:1243213/92‑1 (MQ=255)

                           gccTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATc                                                              <  1:1121226/92‑1 (MQ=255)

                           cccTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATc                                                              >  2:2995984/1‑93 (MQ=255)

                           cccTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATc                                                              <  2:446158/93‑1 (MQ=255)

                             cTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCaa                                                            <  1:140907/93‑1 (MQ=255)

                             cTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCaa                                                            >  1:5317762/1‑93 (MQ=255)

                             cTTTCAGGAAAGTGAGATAGAGCGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGAATGATATCaa                                                            >  1:5534801/1‑93 (MQ=255)

                              tttCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAg                                                           >  1:4804511/1‑93 (MQ=255)

                              tttCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAg                                                           >  1:2360221/1‑93 (MQ=255)

                              tttCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAg                                                           >  1:6378766/1‑93 (MQ=255)

                              tttCAGGAAAGTGAGATAGCGGGTGGACTATGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAg                                                           >  2:4837125/1‑93 (MQ=255)

                                  aGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATaa                                                       <  2:4072285/93‑1 (MQ=255)

                                   ggAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAAt                                                      <  2:6520950/93‑1 (MQ=255)

                                   ggAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAAt                                                      >  2:7808004/1‑93 (MQ=255)

                                     aaaGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAAtgg                                                    >  2:6677070/1‑93 (MQ=255)

                                      aaGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAAtggg                                                   <  2:6440183/93‑1 (MQ=255)

                                       aGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAAtgggt                                                  <  2:7514324/93‑1 (MQ=255)

                                       aGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAAtgggt                                                  <  1:1088927/93‑1 (MQ=255)

                                       aGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAAtgggt                                                  <  1:4637269/93‑1 (MQ=255)

                                         tGAGATAGCGGGTGGACTATGAATTCGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAAtgggttg                                                <  1:7834090/93‑1 (MQ=255)

                                            gaTAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAAtgggttgggt                                             >  1:5413669/1‑93 (MQ=255)

                                             aTAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATgggttgggtt                                            >  2:1615280/1‑93 (MQ=255)

                                              tAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGggttgggttg                                           >  2:7112477/1‑93 (MQ=255)

                                              tAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGggttgggttg                                           >  2:3526651/1‑93 (MQ=255)

                                               aGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGa                                          <  1:1717014/93‑1 (MQ=255)

                                                gCGGGTGGACTCTGGATTGGTTACCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGAt                                         <  1:5889456/93‑1 (MQ=255)

                                                   ggTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTc                                      >  2:5454073/1‑93 (MQ=255)

                                                    gTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCg                                     >  2:6409942/1‑93 (MQ=255)

                                                     tGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCga                                    >  2:2417984/1‑93 (MQ=255)

                                                     tGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCga                                    >  2:4508034/1‑93 (MQ=255)

                                                      ggACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCgag                                   >  1:7729753/1‑93 (MQ=255)

                                                       gACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCgaga                                  >  1:6727941/1‑93 (MQ=255)

                                                        aCTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGAt                                 >  2:880242/1‑93 (MQ=255)

                                                         ctctGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGAtt                                <  2:289193/93‑1 (MQ=255)

                                                           ctGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGAtttt                              <  1:4414581/93‑1 (MQ=255)

                                                             ggATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCg                            >  1:2254005/1‑93 (MQ=255)

                                                              gATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGt                           >  1:1742069/1‑93 (MQ=255)

                                                               aTTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGtt                          <  1:3330590/93‑1 (MQ=255)

                                                                ttGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTa                         <  2:6587062/93‑1 (MQ=255)

                                                                 tGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTaa                        <  1:3542889/93‑1 (MQ=255)

                                                                 tGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTaa                        <  1:3076732/93‑1 (MQ=255)

                                                                  ggTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAAc                       <  2:4703782/93‑1 (MQ=255)

                                                                   gTTTCCCATTCGGTTAAATCGATACGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAAcg                      >  1:3674679/1‑93 (MQ=255)

                                                                       cccATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCa                  <  1:5919800/93‑1 (MQ=255)

                                                                       cccATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCa                  >  2:5333070/1‑93 (MQ=255)

                                                                       cccATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCa                  <  1:6347808/93‑1 (MQ=255)

                                                                        ccATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCAt                 <  2:2843454/93‑1 (MQ=255)

                                                                         cATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATa                <  1:4801567/93‑1 (MQ=255)

                                                                         cATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATa                <  1:5644623/93‑1 (MQ=255)

                                                                         cATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATa                <  1:6589828/93‑1 (MQ=255)

                                                                          aTTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATAc               <  1:1952137/93‑1 (MQ=255)

                                                                          aTTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATAc               >  2:6768067/1‑93 (MQ=255)

                                                                           ttCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACt              >  2:3638028/1‑93 (MQ=255)

                                                                             cGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGc            <  2:7304741/93‑1 (MQ=255)

                                                                               gTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTc          >  2:4747891/1‑93 (MQ=255)

                                                                                ttAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCa         >  2:3421542/1‑93 (MQ=255)

                                                                                    aTCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCAGGtt     >  1:5746159/1‑93 (MQ=255)

                                                                                    aTCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCAGGtt     <  1:641682/93‑1 (MQ=255)

                                                                                    aTCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCAGGtt     <  2:138625/93‑1 (MQ=255)

                                                                                     tCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCAGGTTg    >  1:3875434/1‑93 (MQ=255)

                                                                                      cGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCAGGTTGc   <  2:2305097/93‑1 (MQ=255)

                                                                                       gATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCAGGTTGCt  <  2:7000144/93‑1 (MQ=255)

GAAATCCGCCACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATACGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCAGGTTGCT  >  NC_000913/2281425‑2281604

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AAAGAAATCCGCCACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATACGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCAGGTTGCTCA  >  NC_000913/2281422‑2281606

AAAGAAATCCGCCACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATG                                                                                             >  SRR4302543.2532670/1‑94 (MQ=60)

AAAGAAATCCGCCACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATG                                                                                             <  SRR4302543.7408233/94‑1 (MQ=60)

   AAAATCCGCCCCTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGC                                                                                          <  SRR4302543.2395123/94‑1 (MQ=60)

      ATCCGCCACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCA                                                                                       <  SRR4302543.2669125/94‑1 (MQ=60)

       TCCGCCACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAA                                                                                      <  SRR4302543.6912440/94‑1 (MQ=60)

        CCGCCACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAAC                                                                                     <  SRR4302543.758153/94‑1 (MQ=60)

          GCCACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAA                                                                                   >  SRR4302543.2201324/1‑94 (MQ=60)

           CCACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAAT                                                                                  >  SRR4302543.6914610/1‑94 (MQ=60)

           CCACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAAT                                                                                  >  SRR4302543.5091903/1‑94 (MQ=60)

            CACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATA                                                                                 >  SRR4302543.2859280/1‑94 (MQ=60)

            CACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATA                                                                                 <  SRR4302543.509905/94‑1 (MQ=60)

             CCTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATAT                                                                                <  SRR4302543.2636478/94‑1 (MQ=60)

             ACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATAT                                                                                <  SRR4302543.2856571/94‑1 (MQ=60)

             ACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATAT                                                                                >  SRR4302543.4456004/1‑94 (MQ=60)

              CTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATC                                                                               >  SRR4302543.4063971/1‑94 (MQ=60)

              CTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATC                                                                               <  SRR4302543.4289763/94‑1 (MQ=60)

               TTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCC                                                                              >  SRR4302543.1575940/1‑94 (MQ=60)

                TTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCG                                                                             <  SRR4302543.6610523/94‑1 (MQ=60)

                 TGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGC                                                                            >  SRR4302543.5589168/1‑94 (MQ=60)

                  GCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCA                                                                           <  SRR4302543.847961/94‑1 (MQ=60)

                   CGCCCTGCTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCAT                                                                          <  SRR4302543.1923511/94‑1 (MQ=60)

                   CGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCAT                                                                          <  SRR4302543.4811041/94‑1 (MQ=60)

                   CGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCAT                                                                          >  SRR4302543.2082585/1‑94 (MQ=60)

                   CGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTGCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCAT                                                                          <  SRR4302543.3165614/94‑1 (MQ=60)

                    GCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATG                                                                         >  SRR4302543.237878/1‑94 (MQ=60)

                    GCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATG                                                                         >  SRR4302543.1198150/1‑94 (MQ=60)

                     CCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGA                                                                        <  SRR4302543.1654907/94‑1 (MQ=60)

                     CCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGA                                                                        >  SRR4302543.6941071/1‑94 (MQ=60)

                       CTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATT                                                                      >  SRR4302543.5211407/1‑94 (MQ=60)

                       CTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATT                                                                      <  SRR4302543.6628541/94‑1 (MQ=60)

                       CTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATT                                                                      <  SRR4302543.3886641/94‑1 (MQ=60)

                       CTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATT                                                                      >  SRR4302543.25361/1‑94 (MQ=60)

                       CTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATT                                                                      >  SRR4302543.2167633/1‑94 (MQ=60)

                        TACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTG                                                                     >  SRR4302543.2726767/1‑94 (MQ=60)

                        TACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTG                                                                     >  SRR4302543.3701873/1‑94 (MQ=60)

                        TACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTG                                                                     <  SRR4302543.1022587/94‑1 (MQ=60)

                         ACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTGTCCCATTCGGTTAAATCGAAGCGCGCAACAATATCCGCATGAGTGA                                                                    >  SRR4302543.7071129/1‑94 (MQ=60)

                          CTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGAT                                                                   <  SRR4302543.4956687/94‑1 (MQ=60)

                           TCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATA                                                                  >  SRR4302543.6290652/1‑94 (MQ=60)

                           TCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATA                                                                  <  SRR4302543.7263576/94‑1 (MQ=60)

                            CGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATAT                                                                 <  SRR4302543.3411829/94‑1 (MQ=60)

                              GCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCA                                                               <  SRR4302543.1131393/94‑1 (MQ=60)

                              CCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCA                                                               <  SRR4302543.1131395/94‑1 (MQ=60)

                              CCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCA                                                               <  SRR4302543.6382624/94‑1 (MQ=60)

                              CCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCA                                                               >  SRR4302543.5959518/1‑94 (MQ=60)

                               CCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAA                                                              <  SRR4302543.6458025/94‑1 (MQ=60)

                               CCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAA                                                              >  SRR4302543.6160777/1‑94 (MQ=60)

                               CCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAA                                                              >  SRR4302543.5365812/1‑94 (MQ=60)

                               CCTTTCAGGAAAGTGAGATAGAGCGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGAATGATATCAA                                                              >  SRR4302543.5585097/1‑94 (MQ=60)

                                CTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAG                                                             <  SRR4302543.142140/94‑1 (MQ=60)

                                CTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAG                                                             >  SRR4302543.2381627/1‑94 (MQ=60)

                                CTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAG                                                             >  SRR4302543.396554/1‑94 (MQ=60)

                                CTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAG                                                             >  SRR4302543.4848405/1‑94 (MQ=60)

                                CTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAG                                                             >  SRR4302543.4848404/1‑94 (MQ=60)

                                CTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAG                                                             >  SRR4302543.6438783/1‑94 (MQ=60)

                                CTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAG                                                             >  SRR4302543.6438784/1‑94 (MQ=60)

                                     AGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAAT                                                        <  SRR4302543.6505553/94‑1 (MQ=60)

                                       GAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGG                                                      <  SRR4302543.4864599/94‑1 (MQ=60)

                                        AAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCAGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGG                                                     <  SRR4302543.3858483/94‑1 (MQ=60)

                                          AGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTT                                                   >  SRR4302543.690722/1‑94 (MQ=60)

                                          AGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTT                                                   <  SRR4302543.1098714/94‑1 (MQ=60)

                                          AGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTT                                                   <  SRR4302543.4679442/94‑1 (MQ=60)

                                           GTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTG                                                  <  SRR4302543.5627074/94‑1 (MQ=60)

                                           GTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTG                                                  <  SRR4302543.6928471/94‑1 (MQ=60)

                                            TGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGG                                                 >  SRR4302543.106255/1‑94 (MQ=60)

                                            TGAGATAGCGGGTGGACTATGAATTCGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGG                                                 <  SRR4302543.7907842/94‑1 (MQ=60)

                                              AGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGT                                               <  SRR4302543.4069502/94‑1 (MQ=60)

                                              AGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGT                                               >  SRR4302543.5462918/1‑94 (MQ=60)

                                              AGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGC‑ACAATATCCGCATGATTGATATCAAGATAATGGGTTGGtgt                                              >  SRR4302543.5462917/1‑91 (MQ=60)

                                               GATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTT                                              <  SRR4302543.5807020/94‑1 (MQ=60)

                                                ATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTG                                             >  SRR4302543.4057630/1‑94 (MQ=60)

                                                  AGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGAT                                           <  SRR4302543.1171543/94‑1 (MQ=60)

                                                  AGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGAT                                           <  SRR4302543.1732353/94‑1 (MQ=60)

                                                   GCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATG                                          <  SRR4302543.7191581/94‑1 (MQ=60)

                                                   GCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATG                                          <  SRR4302543.1734184/94‑1 (MQ=60)

                                                   GCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCAGCATGATTGATATAAAGATAATGGGTTGGGTTGATG                                          <  SRR4302543.1409128/94‑1 (MQ=60)

                                                   GCGGGTGGACTCTGGATTGGTTACCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATG                                          <  SRR4302543.5943145/94‑1 (MQ=60)

                                                       GTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGA                                      <  SRR4302543.1121622/94‑1 (MQ=60)

                                                       GTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGA                                      <  SRR4302543.7053009/94‑1 (MQ=60)

                                                        TGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAG                                     >  SRR4302543.4424518/1‑94 (MQ=60)

                                                        TGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAG                                     >  SRR4302543.7802812/1‑94 (MQ=60)

                                                        TGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAG                                     >  SRR4302543.305610/1‑94 (MQ=60)

                                                        TGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAG                                     >  SRR4302543.6638413/1‑94 (MQ=60)

                                                         GGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGA                                    >  SRR4302543.6791504/1‑94 (MQ=60)

                                                          GACTCTGGATTGGTTTCCCATTCGGTTACATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGAT                                   >  SRR4302543.1874827/1‑94 (MQ=60)

                                                          GACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGAT                                   >  SRR4302543.1874828/1‑94 (MQ=60)

                                                           ACTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATT                                  >  SRR4302543.7052139/1‑94 (MQ=60)

                                                            CTCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTT                                 >  SRR4302543.4329442/1‑94 (MQ=60)

                                                             TCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTT                                <  SRR4302543.5702522/94‑1 (MQ=60)

                                                             TCTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTT                                >  SRR4302543.581700/1‑94 (MQ=60)

                                                              CTGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTC                               <  SRR4302543.4454596/94‑1 (MQ=60)

                                                               TGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCG                              >  SRR4302543.2274508/1‑94 (MQ=60)

                                                               TGGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCG                              <  SRR4302543.3523751/94‑1 (MQ=60)

                                                                GGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGT                             <  SRR4302543.7847596/94‑1 (MQ=60)

                                                                GGATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGT                             >  SRR4302543.1757614/1‑94 (MQ=60)

                                                                  ATTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTA                           <  SRR4302543.3360623/94‑1 (MQ=60)

                                                                   TTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAA                          >  SRR4302543.858876/1‑94 (MQ=60)

                                                                   TTGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAA                          <  SRR4302543.4933397/94‑1 (MQ=60)

                                                                    TGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAAC                         <  SRR4302543.3574367/94‑1 (MQ=60)

                                                                    TGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAAC                         <  SRR4302543.3104403/94‑1 (MQ=60)

                                                                    TGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAAC                         <  SRR4302543.3019094/94‑1 (MQ=60)

                                                                    TGGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAAC                         <  SRR4302543.5337949/94‑1 (MQ=60)

                                                                     GGTTTCCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACG                        >  SRR4302543.2048616/1‑94 (MQ=60)

                                                                     GGTTTCCCATTCGGTTAAATCGATACGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACG                        >  SRR4302543.3706944/1‑94 (MQ=60)

                                                                          CCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCAT                   <  SRR4302543.5973874/94‑1 (MQ=60)

                                                                          CCCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCAT                   <  SRR4302543.6407493/94‑1 (MQ=60)

                                                                           CCATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATA                  <  SRR4302543.478626/94‑1 (MQ=60)

                                                                            CATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATAC                 <  SRR4302543.5696075/94‑1 (MQ=60)

                                                                            CATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATAC                 <  SRR4302543.4845449/94‑1 (MQ=60)

                                                                            CATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATAC                 <  SRR4302543.6651912/94‑1 (MQ=60)

                                                                             ATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACT                <  SRR4302543.5116041/94‑1 (MQ=60)

                                                                             ATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACT                >  SRR4302543.7716325/1‑94 (MQ=60)

                                                                             ATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACT                >  SRR4302543.5395804/1‑94 (MQ=60)

                                                                             ATTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACT                <  SRR4302543.1969644/94‑1 (MQ=60)

                                                                              TTCGGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTG               <  SRR4302543.1940148/94‑1 (MQ=60)

                                                                                 GGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTC            >  SRR4302543.238521/1‑94 (MQ=60)

                                                                                 GGTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGATC            >  SRR4302543.2518690/1‑94 (MQ=60)

                                                                                  GTTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCA           >  SRR4302543.6411563/1‑94 (MQ=60)

                                                                                   TTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCAG          >  SRR4302543.6346070/1‑94 (MQ=60)

                                                                                   TTAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCAG          <  SRR4302543.552525/94‑1 (MQ=60)

                                                                                    TAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCAGG         <  SRR4302543.6719110/94‑1 (MQ=60)

                                                                                    TAAATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCAGG         <  SRR4302543.2327370/94‑1 (MQ=60)

                                                                                      AATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCAGGTT       >  SRR4302543.5798533/1‑94 (MQ=60)

                                                                                      AATCGATACGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCAGGTT       >  SRR4302543.3908006/1‑94 (MQ=60)

                                                                                       ATCGATGCGCGCAACAATATCCGCGTGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCGGGTTG      >  SRR4302543.4839551/1‑94 (MQ=60)

                                                                                       ATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCAGGTTG      >  SRR4302543.3909649/1‑94 (MQ=60)

                                                                                       ATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCAGGTTG      >  SRR4302543.4839549/1‑94 (MQ=60)

                                                                                       ATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCAGGTTG      <  SRR4302543.647541/94‑1 (MQ=60)

                                                                                       ATCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCAGGTTG      >  SRR4302543.7908139/1‑94 (MQ=60)

                                                                                        TCGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCAGGTTGC     <  SRR4302543.5017629/94‑1 (MQ=60)

                                                                                         CGATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCAGGTTGCT    >  SRR4302543.3845686/1‑94 (MQ=60)

                                                                                           ATGCGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCAGGTTGCTCA  <  SRR4302543.6295824/94‑1 (MQ=60)

AAAGAAATCCGCCACTTTGCGCCCTACTCGCCCTTTCAGGAAAGTGAGATAGCGGGTGGACTCTGGATTGGTTTCCCATTCGGTTAAATCGATACGCGCAACAATATCCGCATGATTGATATCAAGATAATGGGTTGGGTTGATGTCGAGATTTTCGTTAACGCGCATACTGCTCAGGTTGCTCA  >  NC_000913/2281422‑2281606

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 10 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`