Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,125,339	C→T	D46N (GAT→AAT)	yiiX ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,125,339	0	C	T	100.0%	921.7 / NA	252	D46N (GAT→AAT)	yiiX	hypothetical protein
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (126/126); total (126/126)

Only 100 of 257 total aligned reads displayed.

GCTTGAGCGGGGTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATCGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCAGGCAAAGG  >  NC_000913/4125249‑4125428

gCTTGAGCGGGGTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTgg                                                                                         >  1:420991/1‑93 (MQ=255)

  ttGAGCGGGGTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTa                                                                                       <  1:4156845/93‑1 (MQ=255)

  ttGAGCGGGGTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTa                                                                                       >  2:1638543/1‑93 (MQ=255)

  ttGAGCGGGGTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTa                                                                                       <  1:4585941/93‑1 (MQ=255)

   tGAGCGGGGTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTAt                                                                                      <  2:1714062/93‑1 (MQ=255)

   tGAGCGGGGTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTAt                                                                                      <  1:3629215/93‑1 (MQ=255)

   tGAGCGGGGTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTAt                                                                                      <  1:854494/93‑1 (MQ=255)

     aGCGGGGTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATgg                                                                                    <  1:3726861/93‑1 (MQ=255)

     aGCGGGGTGCATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATgg                                                                                    >  1:2760689/1‑93 (MQ=255)

      gCGGGGTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATggg                                                                                   <  1:3928147/93‑1 (MQ=255)

       cGGGGTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGt                                                                                  <  2:4024237/93‑1 (MQ=255)

          ggTGTATTTCGCCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGc                                                                               <  2:4284300/93‑1 (MQ=255)

          ggTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGc                                                                               >  2:2004819/1‑93 (MQ=255)

          ggTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGc                                                                               <  2:3701056/93‑1 (MQ=255)

          ggTGTAGTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGc                                                                               <  2:332372/93‑1 (MQ=255)

             gtATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAg                                                                            >  2:2775806/1‑93 (MQ=255)

             gtATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAg                                                                            <  1:3567966/93‑1 (MQ=255)

                tttCCCCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCTTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTg                                                                         <  2:675521/93‑1 (MQ=255)

                tttCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTg                                                                         <  2:120046/93‑1 (MQ=255)

                tttCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTg                                                                         <  1:3476458/93‑1 (MQ=255)

                   cACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGAt                                                                      <  2:275249/93‑1 (MQ=255)

                    aCCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATc                                                                     >  2:538699/1‑93 (MQ=255)

                     ccGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCg                                                                    <  1:1186774/93‑1 (MQ=255)

                      cGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGc                                                                   <  2:2578810/93‑1 (MQ=255)

                       gggCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCt                                                                  >  1:4554969/1‑93 (MQ=255)

                        ggCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCtt                                                                 <  1:3073137/93‑1 (MQ=255)

                           cGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTAc                                                              <  2:441715/93‑1 (MQ=255)

                           cGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTAc                                                              >  1:98386/1‑93 (MQ=255)

                           cGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTAc                                                              <  1:4652524/93‑1 (MQ=255)

                            gACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGTATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACt                                                             >  1:3303988/1‑93 (MQ=255)

                            gACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACt                                                             >  2:3553632/1‑93 (MQ=255)

                            gACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACt                                                             >  2:1311743/1‑93 (MQ=255)

                             tcTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACtt                                                            <  1:1347495/92‑1 (MQ=255)

                             aCTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACtt                                                            <  1:2601187/93‑1 (MQ=255)

                             aCTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACtt                                                            >  1:3439399/1‑93 (MQ=255)

                             aCTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACtt                                                            >  2:64625/1‑93 (MQ=255)

                             aCTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGACTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACtt                                                            <  1:3388400/93‑1 (MQ=255)

                                   tCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGAt                                                      <  2:2970173/93‑1 (MQ=255)

                                   tCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGAt                                                      >  2:2127019/1‑93 (MQ=255)

                                     aaaaaCGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGa                                                    >  2:3648711/1‑93 (MQ=255)

                                     aaaaaCGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGa                                                    >  2:2265451/1‑93 (MQ=255)

                                      aaaaCGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAg                                                   >  1:1414174/1‑93 (MQ=255)

                                      aaaaCGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAg                                                   <  2:1257331/93‑1 (MQ=255)

                                      aaaaCGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAg                                                   <  1:11404/93‑1 (MQ=255)

                                       aaaCGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGc                                                  <  1:1948691/93‑1 (MQ=255)

                                         aCGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCga                                                <  2:1915087/93‑1 (MQ=255)

                                         aCGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCga                                                <  1:2679665/93‑1 (MQ=255)

                                         aCGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCga                                                <  1:2654297/93‑1 (MQ=255)

                                         aCGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCga                                                <  1:2566928/93‑1 (MQ=255)

                                             aGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCgagaga                                            <  1:1635168/93‑1 (MQ=255)

                                             aGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCgagaga                                            <  1:4363471/93‑1 (MQ=255)

                                              gggCTTTTTGTTGCGTATCGCCAGCATAGCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGAt                                           <  2:1442699/93‑1 (MQ=255)

                                              gggCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGAt                                           >  1:1057139/1‑93 (MQ=255)

                                                gCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCt                                         >  1:2961378/1‑93 (MQ=255)

                                                    tttGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGaaa                                     <  2:1796633/93‑1 (MQ=255)

                                                    tttGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGaaa                                     >  2:3945359/1‑93 (MQ=255)

                                                     ttgttgCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAg                                    >  2:570416/1‑93 (MQ=255)

                                                      tgttgCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAga                                   >  2:453942/1‑93 (MQ=255)

                                                        ttgCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAgatg                                 <  2:878951/93‑1 (MQ=255)

                                                        ttgCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAgatg                                 >  2:3991214/1‑93 (MQ=255)

                                                         tgCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAgatga                                <  2:4391342/93‑1 (MQ=255)

                                                          gCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAgatgat                               >  2:927061/1‑93 (MQ=255)

                                                            gTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGt                             >  2:1160172/1‑93 (MQ=255)

                                                             tATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTc                            >  2:2402734/1‑93 (MQ=255)

                                                             tATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTc                            <  2:2701769/93‑1 (MQ=255)

                                                             tATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTc                            <  1:2282409/93‑1 (MQ=255)

                                                             tATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTc                            <  2:3286666/93‑1 (MQ=255)

                                                               tCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGc                          >  1:2737311/1‑93 (MQ=255)

                                                               tCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGc                          >  2:1488572/1‑93 (MQ=255)

                                                               tCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGc                          >  2:2851699/1‑93 (MQ=255)

                                                                cACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGcc                         <  2:3395371/93‑1 (MQ=255)

                                                                   cAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGt                      >  1:3246571/1‑93 (MQ=255)

                                                                    aGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGtt                     >  2:1232899/1‑93 (MQ=255)

                                                                       aTACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTtgt                  >  1:2887463/1‑93 (MQ=255)

                                                                       aTACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTtgt                  >  2:4505605/1‑93 (MQ=255)

                                                                       aTACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTtgt                  >  1:3854011/1‑93 (MQ=255)

                                                                        tACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTtgtg                 >  2:2640978/1‑93 (MQ=255)

                                                                         aCCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTgg                <  1:3983514/93‑1 (MQ=255)

                                                                          ccGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGc               <  2:4473769/93‑1 (MQ=255)

                                                                          ccGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGc               <  1:14990/93‑1 (MQ=255)

                                                                            ggTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTg             >  1:3192261/1‑93 (MQ=255)

                                                                            ggTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTg             >  2:737260/1‑93 (MQ=255)

                                                                             gtgtGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGc            >  1:359477/1‑93 (MQ=255)

                                                                              tgtgGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGcc           <  1:2014850/93‑1 (MQ=255)

                                                                               gtgGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCa          >  2:4649337/1‑93 (MQ=255)

                                                                                tgGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGGCAg         >  2:3479465/1‑93 (MQ=255)

                                                                                tgGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCAg         >  1:2552754/1‑93 (MQ=255)

                                                                                tgGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCAg         <  2:2199001/93‑1 (MQ=255)

                                                                                tgGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCAg         <  2:3906349/93‑1 (MQ=255)

                                                                                tgGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCAg         >  1:3693274/1‑93 (MQ=255)

                                                                                tgGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCAg         >  2:1657294/1‑93 (MQ=255)

                                                                                 ggCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCAgg        >  1:1302599/1‑93 (MQ=255)

                                                                                    tataATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCAGGCaa     >  2:412240/1‑93 (MQ=255)

                                                                                     ataATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCAGGCaaa    <  1:3101032/93‑1 (MQ=255)

                                                                                     ataATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCAGGCaaa    <  1:1794039/93‑1 (MQ=255)

                                                                                      taATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCAGGCAAAg   <  1:4386369/93‑1 (MQ=255)

                                                                                      taATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCAGGCAAAg   >  1:2080363/1‑93 (MQ=255)

                                                                                      taATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCAGGCAAAg   >  2:2092915/1‑93 (MQ=255)

                                                                                       aaTTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCAGGCAAAgg  <  1:2805572/93‑1 (MQ=255)

                                                                                       aaTTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCAGGCAAAgg  >  2:2921865/1‑93 (MQ=255)

GCTTGAGCGGGGTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATCGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCAGGCAAAGG  >  NC_000913/4125249‑4125428

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ACTGCTTGAGCGGGGTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATCGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCAGGCAAAGGCAGG  >  NC_000913/4125246‑4125432

ACTGCTTGAGCGGGGTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATT                                                                                               <  SRR4302535.1307828/94‑1 (MQ=60)

 CTGCTTGAGCGGGGTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTG                                                                                              <  SRR4302535.3305001/94‑1 (MQ=60)

 CTGCTTGAGCGGGGTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTG                                                                                              >  SRR4302535.153490/1‑94 (MQ=60)

 CTGCTTGAGCGGGGTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTG                                                                                              <  SRR4302535.4279678/94‑1 (MQ=60)

  TGCTTGAGCGGGGTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGG                                                                                             >  SRR4302535.2802106/1‑94 (MQ=60)

  TGCTTGAGCGGGGTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGG                                                                                             >  SRR4302535.2764905/1‑94 (MQ=60)

  TGCTTGAGCGGGGTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGG                                                                                             >  SRR4302535.423931/1‑94 (MQ=60)

     TTGAGCGGGGTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTAT                                                                                          <  SRR4302535.4617168/94‑1 (MQ=60)

     TTGAGCGGGGTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTAT                                                                                          <  SRR4302535.4185299/94‑1 (MQ=60)

      TGAGCGGGGTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATG                                                                                         <  SRR4302535.860516/94‑1 (MQ=60)

      TGAGCGGGGTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATG                                                                                         <  SRR4302535.3654371/94‑1 (MQ=60)

       GAGCGGGGTGCATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGG                                                                                        >  SRR4302535.2780363/1‑94 (MQ=60)

        AGCGGGGTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGG                                                                                       >  SRR4302535.4565124/1‑94 (MQ=60)

        AGCGGGGTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGG                                                                                       <  SRR4302535.3752680/94‑1 (MQ=60)

         GCGGGGTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGT                                                                                      <  SRR4302535.3954978/94‑1 (MQ=60)

         GCGGGGTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGT                                                                                      <  SRR4302535.1770226/94‑1 (MQ=60)

           GGGGTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCG                                                                                    >  SRR4302535.1786194/1‑94 (MQ=60)

            GGGTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGC                                                                                   <  SRR4302535.3506/94‑1 (MQ=60)

              GTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCA                                                                                 >  SRR4302535.3991127/1‑94 (MQ=60)

               TGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAG                                                                                <  SRR4302535.3730664/94‑1 (MQ=60)

                GTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCGAGT                                                                               >  SRR4302535.1318557/1‑94 (MQ=60)

                GTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGT                                                                               <  SRR4302535.2660704/94‑1 (MQ=60)

                GTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGT                                                                               <  SRR4302535.3592707/94‑1 (MQ=60)

                   TTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATCCCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGG                                                                            <  SRR4302535.1906360/94‑1 (MQ=60)

                   TTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGG                                                                            <  SRR4302535.3500618/94‑1 (MQ=60)

                    TTCACCGGGCCGACTGCTTCAAAGACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGA                                                                           <  SRR4302535.3037610/94‑1 (MQ=60)

                     TCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGAT                                                                          >  SRR4302535.3921672/1‑94 (MQ=60)

                     TCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGAT                                                                          >  SRR4302535.3466549/1‑94 (MQ=60)

                      CACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATC                                                                         >  SRR4302535.3521657/1‑94 (MQ=60)

                      CACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATC                                                                         >  SRR4302535.3448009/1‑94 (MQ=60)

                       ACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCG                                                                        <  SRR4302535.2029307/94‑1 (MQ=60)

                       ACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCG                                                                        <  SRR4302535.461148/94‑1 (MQ=60)

                        CCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGC                                                                       <  SRR4302535.1195254/94‑1 (MQ=60)

                        CCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGC                                                                       <  SRR4302535.362818/94‑1 (MQ=60)

                         CGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCT                                                                      >  SRR4302535.4586082/1‑94 (MQ=60)

                          GGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTT                                                                     >  SRR4302535.1255663/1‑94 (MQ=60)

                           GGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTT                                                                    <  SRR4302535.3094591/94‑1 (MQ=60)

                             CCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTAC                                                                  <  SRR4302535.2056237/94‑1 (MQ=60)

                             CCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTAC                                                                  >  SRR4302535.99081/1‑94 (MQ=60)

                              CGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGTATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACT                                                                 >  SRR4302535.3326963/1‑94 (MQ=60)

                              CGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACT                                                                 <  SRR4302535.4684026/94‑1 (MQ=60)

                              CGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACT                                                                 >  SRR4302535.2723498/1‑94 (MQ=60)

                              CGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACT                                                                 <  SRR4302535.1956404/94‑1 (MQ=60)

                              CGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACT                                                                 >  SRR4302535.1384580/1‑94 (MQ=60)

                               GACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTT                                                                <  SRR4302535.2957667/94‑1 (MQ=60)

                               GACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTT                                                                >  SRR4302535.3463318/1‑94 (MQ=60)

                                TCTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTT                                                               <  SRR4302535.1357114/94‑1 (MQ=60)

                                ACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTT                                                               <  SRR4302535.2619859/94‑1 (MQ=60)

                                ACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGACTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTT                                                               <  SRR4302535.3411972/94‑1 (MQ=60)

                                 CTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTG                                                              <  SRR4302535.3604237/94‑1 (MQ=60)

                                  TGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGC                                                             >  SRR4302535.1504178/1‑94 (MQ=60)

                                   GCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCG                                                            <  SRR4302535.2054786/94‑1 (MQ=60)

                                    CTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGA                                                           >  SRR4302535.3863937/1‑94 (MQ=60)

                                    CTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGA                                                           >  SRR4302535.309611/1‑94 (MQ=60)

                                    CTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGA                                                           >  SRR4302535.2691457/1‑94 (MQ=60)

                                     TTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGAT                                                          >  SRR4302535.4246582/1‑94 (MQ=60)

                                      TCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATG                                                         <  SRR4302535.4150345/94‑1 (MQ=60)

                                       CAAAAACGTAGGGCTTTTTGTTGCTTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGA                                                        <  SRR4302535.3361802/94‑1 (MQ=60)

                                       CAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGA                                                        >  SRR4302535.4212024/1‑94 (MQ=60)

                                        AAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATTGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAG                                                       <  SRR4302535.4600730/94‑1 (MQ=60)

                                        AAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAG                                                       <  SRR4302535.929672/94‑1 (MQ=60)

                                        AAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAG                                                       >  SRR4302535.1424270/1‑94 (MQ=60)

                                         AAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGC                                                      <  SRR4302535.11492/94‑1 (MQ=60)

                                          AAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCG                                                     <  SRR4302535.1962719/94‑1 (MQ=60)

                                           AACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGA                                                    >  SRR4302535.2611682/1‑94 (MQ=60)

                                           AACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGA                                                    >  SRR4302535.3181685/1‑94 (MQ=60)

                                            ACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAG                                                   <  SRR4302535.2698834/94‑1 (MQ=60)

                                            ACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAG                                                   <  SRR4302535.2673313/94‑1 (MQ=60)

                                            ACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAG                                                   <  SRR4302535.2585395/94‑1 (MQ=60)

                                            ACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAG                                                   <  SRR4302535.1574449/94‑1 (MQ=60)

                                             CGTAGTGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGA                                                  <  SRR4302535.1092607/94‑1 (MQ=60)

                                               TAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGA                                                >  SRR4302535.2594872/1‑94 (MQ=60)

                                                AGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGAT                                               >  SRR4302535.1064654/1‑94 (MQ=60)

                                                AGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGAT                                               <  SRR4302535.4393332/94‑1 (MQ=60)

                                                AGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGAT                                               <  SRR4302535.1646983/94‑1 (MQ=60)

                                                  GGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCT                                             >  SRR4302535.4434890/1‑94 (MQ=60)

                                                  GGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCT                                             >  SRR4302535.4175582/1‑94 (MQ=60)

                                                  GGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCT                                             >  SRR4302535.2982165/1‑94 (MQ=60)

                                                  GGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCT                                             >  SRR4302535.2580898/1‑94 (MQ=60)

                                                    CTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGA                                           >  SRR4302535.1181278/1‑94 (MQ=60)

                                                    CTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGA                                           >  SRR4302535.3140251/1‑94 (MQ=60)

                                                    CTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGA                                           >  SRR4302535.35975/1‑94 (MQ=60)

                                                    CTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGATATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGA                                           >  SRR4302535.3324489/1‑94 (MQ=60)

                                                        TTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGA                                       <  SRR4302535.2323438/94‑1 (MQ=60)

                                                        TTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGA                                       <  SRR4302535.3898274/94‑1 (MQ=60)

                                                         TGTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGAT                                      <  SRR4302535.3415212/94‑1 (MQ=60)

                                                          TTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATG                                     <  SRR4302535.1173475/94‑1 (MQ=60)

                                                          GTTGCGTATCACCAGCATCCCGGTGTGGCTAGAAGTGGTAGGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATG                                     <  SRR4302535.3072877/94‑1 (MQ=60)

                                                          GTTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATG                                     <  SRR4302535.3859171/94‑1 (MQ=60)

                                                           TTGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGA                                    >  SRR4302535.4317171/1‑94 (MQ=60)

                                                            TGCGTATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGAT                                   <  SRR4302535.1453943/94‑1 (MQ=60)

                                                                TATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCG                               <  SRR4302535.2298713/94‑1 (MQ=60)

                                                                 ATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGC                              >  SRR4302535.2756834/1‑94 (MQ=60)

                                                                 ATCACCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGC                              >  SRR4302535.3696444/1‑94 (MQ=60)

                                                                     CCAGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGT                          >  SRR4302535.3269117/1‑94 (MQ=60)

                                                                       AGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTT                        >  SRR4302535.2889732/1‑94 (MQ=60)

                                                                       AGCATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTT                        <  SRR4302535.2204735/94‑1 (MQ=60)

                                                                         CATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGT                      >  SRR4302535.2907893/1‑94 (MQ=60)

                                                                         CATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGT                      >  SRR4302535.3880551/1‑94 (MQ=60)

                                                                          ATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTG                     <  SRR4302535.3221310/94‑1 (MQ=60)

                                                                          ATACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTG                     <  SRR4302535.2453831/94‑1 (MQ=60)

                                                                            ACCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGC                   <  SRR4302535.4010733/94‑1 (MQ=60)

                                                                             CCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCT                  <  SRR4302535.62387/94‑1 (MQ=60)

                                                                             CCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCT                  <  SRR4302535.15097/94‑1 (MQ=60)

                                                                             CCGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCT                  <  SRR4302535.4398508/94‑1 (MQ=60)

                                                                              CGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTG                 >  SRR4302535.3214345/1‑94 (MQ=60)

                                                                              CGGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTG                 >  SRR4302535.752397/1‑94 (MQ=60)

                                                                               GGTGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGC                >  SRR4302535.361966/1‑94 (MQ=60)

                                                                                 TGTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCA              <  SRR4302535.2029364/94‑1 (MQ=60)

                                                                                  GTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCAG             >  SRR4302535.3718836/1‑94 (MQ=60)

                                                                                  GTGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCAG             >  SRR4302535.2571134/1‑94 (MQ=60)

                                                                                   TGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCAGG            >  SRR4302535.1311901/1‑94 (MQ=60)

                                                                                   TGGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCAGG            <  SRR4302535.134967/94‑1 (MQ=60)

                                                                                    GGCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCAGGC           <  SRR4302535.3278660/94‑1 (MQ=60)

                                                                                     GCTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCAGGCA          <  SRR4302535.3684363/94‑1 (MQ=60)

                                                                                      CTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCAGGCAA         >  SRR4302535.2671450/1‑94 (MQ=60)

                                                                                      CTATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCAGGCAA         >  SRR4302535.2755200/1‑94 (MQ=60)

                                                                                        ATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCAGGCAAAG       <  SRR4302535.1807010/94‑1 (MQ=60)

                                                                                        ATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCAGGCAAAG       >  SRR4302535.4628785/1‑94 (MQ=60)

                                                                                        ATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCAGGCAAAG       <  SRR4302535.3122619/94‑1 (MQ=60)

                                                                                        ATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCAGGCAAAG       >  SRR4302535.2924190/1‑94 (MQ=60)

                                                                                        ATAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCAGGCAAAG       >  SRR4302535.2095352/1‑94 (MQ=60)

                                                                                         TAATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCAGGCAAAGG      <  SRR4302535.4416377/94‑1 (MQ=60)

                                                                                          AATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCAGGCAAAGGC     <  SRR4302535.2825519/94‑1 (MQ=60)

                                                                                          AATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCAGGCAAAGGC     <  SRR4302535.2818725/94‑1 (MQ=60)

                                                                                           ATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCAGGCAAAGGCG    >  SRR4302535.3796280/1‑94 (MQ=60)

                                                                                           ATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCAGGCAAAGGCA    <  SRR4302535.4507249/94‑1 (MQ=60)

                                                                                           ATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCAGGCAAAGGCA    >  SRR4302535.3796279/1‑94 (MQ=60)

                                                                                           ATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCAGGCAAAGGCA    <  SRR4302535.3194313/94‑1 (MQ=60)

                                                                                           ATTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCAGGCAAAGGCA    <  SRR4302535.1342578/94‑1 (MQ=60)

                                                                                            TTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCAGGCAAAGGCAG   <  SRR4302535.1350432/94‑1 (MQ=60)

                                                                                            TTGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCAGGCAAAGGCAG   <  SRR4302535.1740410/94‑1 (MQ=60)

                                                                                             TGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCAGGCAAAGGCAGG  <  SRR4302535.3681845/94‑1 (MQ=60)

ACTGCTTGAGCGGGGTGTATTTCACCGGGCCGACTGCTTCAAAAACGTAGGGCTTTTTGTTGCGTATCACCAGCATACCGGTGTGGCTATAATCGGTATGGGTCGCCAGTTGGATCGCTTTACTTTGCGATGAGCGAGAGATCTGAAAGATGATGTCGCCGGTTTGTGGCTGCCAGGCAAAGGCAGG  >  NC_000913/4125246‑4125432

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`