Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,128,355	A→G	H314R (CAC→CGC)	metL →	aspartokinase II

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,128,355	0	A	G	100.0%	589.5 / NA	186	H314R (CAC→CGC)	metL	aspartokinase II
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (95/91); total (95/91)

Only 100 of 203 total aligned reads displayed.

AACTGCGCTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCACGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATCCTGAAACGCG  >  NC_000913/4128265‑4128444

aaCTGCGCTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCcgcg                                                                                         >  2:2807998/1‑93 (MQ=255)

 aCTGCGCTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCga                                                                                        >  1:2382536/1‑93 (MQ=255)

 aCTGCGCTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCga                                                                                        <  2:2434349/93‑1 (MQ=255)

  cTGCGCTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCgat                                                                                       <  1:1448314/93‑1 (MQ=255)

    gcgcTGTAGCTACACGCGGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCgatga                                                                                     <  1:371818/93‑1 (MQ=255)

    gcgcTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCgatga                                                                                     >  2:4345446/1‑93 (MQ=255)

    gcgcTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCgatga                                                                                     <  2:2226297/93‑1 (MQ=255)

    gcgcTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCgatga                                                                                     <  1:1800652/93‑1 (MQ=255)

      gcTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGatgatg                                                                                   >  2:2465690/1‑93 (MQ=255)

       cTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGt                                                                                  <  1:1279471/93‑1 (MQ=255)

       cTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGt                                                                                  >  2:3616308/1‑93 (MQ=255)

         gTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCt                                                                                >  1:1321422/1‑93 (MQ=255)

         gTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCt                                                                                >  1:1978149/1‑93 (MQ=255)

         gTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCt                                                                                >  2:128971/1‑93 (MQ=255)

           aGCTACACGCCGGATCAAGGTTCGACGCGCATTGAACGCGTGCTGGCCTCTGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGt                                                                              <  1:2520538/93‑1 (MQ=255)

            gCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGtt                                                                             >  1:2308043/1‑93 (MQ=255)

            gCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGtt                                                                             >  1:4305691/1‑93 (MQ=255)

             cTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGttt                                                                            >  1:3913723/1‑93 (MQ=255)

             cTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGttt                                                                            <  2:4476561/93‑1 (MQ=255)

              tACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTttg                                                                           >  2:1133575/1‑93 (MQ=255)

               acacGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTttga                                                                          <  2:395873/93‑1 (MQ=255)

               acacGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTttga                                                                          <  1:1343678/93‑1 (MQ=255)

                  cGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTttgattg                                                                       <  2:1658582/93‑1 (MQ=255)

                  cGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTttgattg                                                                       <  2:4665135/93‑1 (MQ=255)

                   gCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTttgattga                                                                      <  1:679276/93‑1 (MQ=255)

                    ccGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAg                                                                     <  1:3279276/93‑1 (MQ=255)

                    ccGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAg                                                                     <  1:3136344/93‑1 (MQ=255)

                     cGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGt                                                                    <  2:612167/93‑1 (MQ=255)

                     cGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGt                                                                    <  1:2535675/93‑1 (MQ=255)

                      ggATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGtt                                                                   >  1:1932894/1‑93 (MQ=255)

                      ggATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGtt                                                                   <  1:3703434/93‑1 (MQ=255)

                       gATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGttt                                                                  <  2:1051197/93‑1 (MQ=255)

                        aTCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTc                                                                 <  1:4523954/93‑1 (MQ=255)

                        aTCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTc                                                                 <  2:2509405/93‑1 (MQ=255)

                        aTCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGCATTGTCACCAGCCGCGATGATGCCTGTTTGATTGAGTTTc                                                                 >  2:3802199/1‑93 (MQ=255)

                         tCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCa                                                                >  1:509904/1‑93 (MQ=255)

                         tCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCa                                                                <  1:1020776/93‑1 (MQ=255)

                         tCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCa                                                                >  1:1369419/1‑93 (MQ=255)

                          cAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAg                                                               <  2:3207647/93‑1 (MQ=255)

                          cAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAg                                                               <  1:2468479/93‑1 (MQ=255)

                            aGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGt                                                             >  2:2770565/1‑93 (MQ=255)

                            aGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGt                                                             <  1:582541/93‑1 (MQ=255)

                            aGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGt                                                             <  2:913662/93‑1 (MQ=255)

                               ttCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGcc                                                          <  2:669804/93‑1 (MQ=255)

                               ttCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGcc                                                          >  2:1320003/1‑93 (MQ=255)

                                tCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGGTTCAGGTGccc                                                         >  2:1623997/1‑93 (MQ=255)

                                  cACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGc                                                       >  1:2455625/1‑93 (MQ=255)

                                   ccgcgCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGcc                                                      <  1:1591914/92‑1 (MQ=255)

                                   aCGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGcc                                                      >  1:280787/1‑93 (MQ=255)

                                   aCGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGcc                                                      <  2:3369701/93‑1 (MQ=255)

                                    cgcgCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCGCCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCa                                                     <  1:1398906/93‑1 (MQ=255)

                                    cgcgCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCa                                                     >  1:3415153/1‑93 (MQ=255)

                                      cgcATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAgc                                                   >  2:4532743/1‑92 (MQ=255)

                                      cgcATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGt                                                   >  1:631474/1‑93 (MQ=255)

                                       gcATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTc                                                  >  1:182879/1‑93 (MQ=255)

                                        cATTGAACGCCGCCTGGCCTCCGGTACTGGTGCGCGTATTGTCGCCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCa                                                 <  1:2170148/93‑1 (MQ=255)

                                         aTTGAGCGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAg                                                <  2:2038630/93‑1 (MQ=255)

                                         aTTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAg                                                >  2:1038231/1‑93 (MQ=255)

                                          ttGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAgg                                               <  2:3952841/93‑1 (MQ=255)

                                           tGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGa                                              >  2:4232501/1‑93 (MQ=255)

                                             aaCGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGAtt                                            >  1:967742/1‑93 (MQ=255)

                                                  gTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCaaa                                       <  2:2364086/93‑1 (MQ=255)

                                                  gTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCaaa                                       >  1:818556/1‑93 (MQ=255)

                                                    gCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACt                                     <  1:3093885/93‑1 (MQ=255)

                                                     ttcgCCCCCGGTACTGGGGCGCGTATTGGCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTg                                    <  1:1145558/90‑1 (MQ=255)

                                                     cTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTg                                    >  1:78402/1‑93 (MQ=255)

                                                      tGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTgg                                   >  2:1860634/1‑93 (MQ=255)

                                                      tGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTgg                                   >  1:4093531/1‑93 (MQ=255)

                                                      tGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTgg                                   >  1:1752448/1‑93 (MQ=255)

                                                      tGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTgg                                   >  2:771444/1‑93 (MQ=255)

                                                       ggCCTCCGGTCGTGGTGCGTGTATTGCAACCAGCCGCGATGATGTCTGTTTAATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGgc                                  <  2:4276998/93‑1 (MQ=255)

                                                       ggCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGgc                                  >  1:2145970/1‑93 (MQ=255)

                                                       gcccTCCGGTACTGGGGCGCGTATGGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGgc                                  <  1:2970261/91‑1 (MQ=255)

                                                          cTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCa                               <  1:1846685/93‑1 (MQ=255)

                                                            ccGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATa                             <  2:1583613/93‑1 (MQ=255)

                                                            ccGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATa                             <  1:2065250/93‑1 (MQ=255)

                                                            ccGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATa                             <  1:573470/93‑1 (MQ=255)

                                                            ccGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATa                             <  2:1934317/93‑1 (MQ=255)

                                                             cGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATaa                            <  2:3697754/93‑1 (MQ=255)

                                                              ggTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATaaa                           <  2:1356937/93‑1 (MQ=255)

                                                              ggTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATaaa                           <  1:1064571/93‑1 (MQ=255)

                                                              ggTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATaaa                           >  1:4263759/1‑93 (MQ=255)

                                                               gTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAag                          >  2:1877225/1‑93 (MQ=255)

                                                                tACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAaga                         <  1:3047902/93‑1 (MQ=255)

                                                                tACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAaga                         >  2:2703160/1‑93 (MQ=255)

                                                                       gcgcGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGAc                  <  1:3879159/93‑1 (MQ=255)

                                                                       gcgcGTATGGTCACCAGCCGGGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGAc                  <  2:3298497/93‑1 (MQ=255)

                                                                         gcgTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCCAACTGGCGCATAACGAGATAGACCa                >  1:234284/1‑93 (MQ=255)

                                                                            tATTGTCACCAGCCGCGATGATGTGTGTTTGATGGAGTTGCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAAt             <  2:4050640/93‑1 (MQ=255)

                                                                            tATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAAt             >  1:1720892/1‑93 (MQ=255)

                                                                            tATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAAt             >  1:647111/1‑93 (MQ=255)

                                                                            tATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAAt             >  2:4585957/1‑93 (MQ=255)

                                                                              ttGTCGCCAGCCGCGAGGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATcc           <  2:1100851/93‑1 (MQ=255)

                                                                              ttGTCACCACCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCGGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATcc           <  1:2517421/93‑1 (MQ=255)

                                                                               tGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATCCt          <  2:3157692/93‑1 (MQ=255)

                                                                                 tCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATCCTGa        >  2:2636211/1‑93 (MQ=255)

                                                                                  cACCAGCCGCGATGATGTCTGTTTGATTGAGGTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGGGCATAAAGAGATCGACCCAATCCTGaa       >  2:417773/1‑93 (MQ=255)

                                                                                    ccAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATCCTGAAAc     <  2:1785447/93‑1 (MQ=255)

                                                                                      aGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATCCTGAAAcgc   >  2:2186643/1‑93 (MQ=255)

                                                                                       gCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATCCTGAAAcgcg  >  2:3188629/1‑93 (MQ=255)

AACTGCGCTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCACGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATCCTGAAACGCG  >  NC_000913/4128265‑4128444

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGCAACTGCGCTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCACGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATCCTGAAACGCGCGC  >  NC_000913/4128262‑4128447

TGCAACTGCGCTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCG                                                                                              <  SRR4302535.1826455/94‑1 (MQ=60)

TGCAACTGCGCTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCG                                                                                              <  SRR4302535.3316340/94‑1 (MQ=60)

TGCAACTGCGCTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCG                                                                                              >  SRR4302535.722892/1‑94 (MQ=60)

  CAACTGCGCTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCG                                                                                            <  SRR4302535.2991535/94‑1 (MQ=60)

   AACTGCGCTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGA                                                                                           >  SRR4302535.2399644/1‑94 (MQ=60)

    ACTGCGCTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGAT                                                                                          >  SRR4302535.2536428/1‑94 (MQ=60)

     CTGCGCTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATG                                                                                         <  SRR4302535.1458669/94‑1 (MQ=60)

     CTGCGCTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATG                                                                                         >  SRR4302535.1845531/1‑94 (MQ=60)

      TGCGCTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGA                                                                                        >  SRR4302535.3232482/1‑94 (MQ=60)

       GCGCTGTAGCTACACGCGGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGAT                                                                                       <  SRR4302535.374391/94‑1 (MQ=60)

       GCGCTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGAT                                                                                       <  SRR4302535.1813669/94‑1 (MQ=60)

       GCGCTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGAT                                                                                       <  SRR4302535.1769329/94‑1 (MQ=60)

        CGCTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATG                                                                                      <  SRR4302535.2385641/94‑1 (MQ=60)

        CGCTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATG                                                                                      <  SRR4302535.2339274/94‑1 (MQ=60)

         GCTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGT                                                                                     >  SRR4302535.2130264/1‑94 (MQ=60)

         GCTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGT                                                                                     >  SRR4302535.1759721/1‑94 (MQ=60)

          CTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTC                                                                                    <  SRR4302535.1288606/94‑1 (MQ=60)

           TGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCT                                                                                   >  SRR4302535.1992395/1‑94 (MQ=60)

           TGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCT                                                                                   >  SRR4302535.1330857/1‑94 (MQ=60)

              AGCTACACGCCGGATCAAGGTTCGACGCGCATTGAACGCGTGCTGGCCTCTGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTT                                                                                <  SRR4302535.2538701/94‑1 (MQ=60)

              AGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTT                                                                                >  SRR4302535.4335148/1‑94 (MQ=60)

              AGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTT                                                                                >  SRR4302535.2324556/1‑94 (MQ=60)

               GCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTT                                                                               >  SRR4302535.579585/1‑94 (MQ=60)

               GCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTT                                                                               >  SRR4302535.3940511/1‑94 (MQ=60)

                CTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTG                                                                              >  SRR4302535.2527161/1‑94 (MQ=60)

                CTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTG                                                                              <  SRR4302535.2472674/94‑1 (MQ=60)

                CTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTG                                                                              >  SRR4302535.1574540/1‑94 (MQ=60)

                CTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTG                                                                              <  SRR4302535.2909942/94‑1 (MQ=60)

                  ACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGAT                                                                            <  SRR4302535.1353268/94‑1 (MQ=60)

                      GCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAG                                                                        <  SRR4302535.684029/94‑1 (MQ=60)

                       CCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGT                                                                       >  SRR4302535.2184213/1‑94 (MQ=60)

                       CCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGT                                                                       <  SRR4302535.3158172/94‑1 (MQ=60)

                       CCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGT                                                                       <  SRR4302535.3302050/94‑1 (MQ=60)

                        CGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTT                                                                      <  SRR4302535.2553939/94‑1 (MQ=60)

                        CGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTT                                                                      >  SRR4302535.1946817/1‑94 (MQ=60)

                        CGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGCACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTT                                                                      >  SRR4302535.4183450/1‑94 (MQ=60)

                         GGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTT                                                                     <  SRR4302535.3729079/94‑1 (MQ=60)

                           ATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCA                                                                   >  SRR4302535.1379206/1‑94 (MQ=60)

                           ATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCA                                                                   >  SRR4302535.3059979/1‑94 (MQ=60)

                           ATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCA                                                                   >  SRR4302535.513471/1‑94 (MQ=60)

                           ATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCA                                                                   <  SRR4302535.4554949/94‑1 (MQ=60)

                           ATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCA                                                                   <  SRR4302535.2485372/94‑1 (MQ=60)

                            TCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAG                                                                  <  SRR4302535.1028029/94‑1 (MQ=60)

                            TCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAG                                                                  <  SRR4302535.1973928/94‑1 (MQ=60)

                            TCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAG                                                                  <  SRR4302535.4618564/94‑1 (MQ=60)

                            ACAAGCTTCCACGCGCAGTGAACGCGTGCTAGCCGCCGGGACTGCTGCGCGTATTGTCACCAGCCGGGATGATGTCTGTTTGATTGAGTTTCAG                                                                  <  SRR4302535.492487/94‑1 (MQ=60)

                             CAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGG                                                                 <  SRR4302535.2247546/94‑1 (MQ=60)

                             CAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGG                                                                 <  SRR4302535.2486274/94‑1 (MQ=60)

                              AAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGT                                                                <  SRR4302535.609983/94‑1 (MQ=60)

                               AGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTG                                                               <  SRR4302535.53767/94‑1 (MQ=60)

                               AGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTG                                                               <  SRR4302535.586626/94‑1 (MQ=60)

                                    CCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGC                                                          >  SRR4302535.2012181/1‑94 (MQ=60)

                                    CCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGC                                                          >  SRR4302535.2473330/1‑94 (MQ=60)

                                     CACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCC                                                         >  SRR4302535.282745/1‑94 (MQ=60)

                                     CACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCC                                                         <  SRR4302535.3695906/94‑1 (MQ=60)

                                      cgGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCA                                                        <  SRR4302535.3751082/92‑1 (MQ=60)

                                      CCGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCA                                                        <  SRR4302535.1603399/94‑1 (MQ=60)

                                      ACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCA                                                        >  SRR4302535.3438910/1‑94 (MQ=60)

                                       CGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCGCCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAG                                                       <  SRR4302535.1408893/94‑1 (MQ=60)

                                        GCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGT                                                      >  SRR4302535.635877/1‑94 (MQ=60)

                                         CGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTC                                                     >  SRR4302535.184140/1‑94 (MQ=60)

                                           CATTGAACGCCGCCTGGCCTCCGGTACTGGTGCGCGTATTGTCGCCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAG                                                   <  SRR4302535.2185687/94‑1 (MQ=60)

                                              TGAACGCGTGCTGGCCCCCGGTACTGGTGCGCTTATTGTCCCCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGAT                                                <  SRR4302535.3113041/94‑1 (MQ=60)

                                               GAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATT                                               >  SRR4302535.974619/1‑94 (MQ=60)

                                                    CGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAA                                          >  SRR4302535.824301/1‑94 (MQ=60)

                                                      TGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGAGTTCAAACT                                        >  SRR4302535.1449078/1‑94 (MQ=60)

                                                       GCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTG                                       <  SRR4302535.2544448/94‑1 (MQ=60)

                                                       GCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTG                                       >  SRR4302535.78966/1‑94 (MQ=60)

                                                       GCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTG                                       <  SRR4302535.3115432/94‑1 (MQ=60)

                                                        ttcgcccCCGGTACTGGGGCGCGTATTGGCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGG                                      <  SRR4302535.1153721/87‑1 (MQ=60)

                                                        CTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGG                                      >  SRR4302535.4121544/1‑94 (MQ=60)

                                                        CTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGG                                      >  SRR4302535.103536/1‑94 (MQ=60)

                                                        CTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGG                                      >  SRR4302535.1765114/1‑94 (MQ=60)

                                                         TGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGC                                     >  SRR4302535.2161408/1‑94 (MQ=60)

                                                          GCCCTCCGGTACTGGGGCGCGTATGGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCG                                    <  SRR4302535.2991110/94‑1 (MQ=60)

                                                            CCTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCA                                  >  SRR4302535.3731981/1‑94 (MQ=60)

                                                             CTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCAT                                 <  SRR4302535.1355818/94‑1 (MQ=60)

                                                             CTCCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCAT                                 <  SRR4302535.1859994/94‑1 (MQ=60)

                                                               CCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAA                               <  SRR4302535.2080139/94‑1 (MQ=60)

                                                               CCGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAA                               <  SRR4302535.577494/94‑1 (MQ=60)

                                                                CGGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAA                              >  SRR4302535.4292956/1‑94 (MQ=60)

                                                                 GGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAG                             <  SRR4302535.1072145/94‑1 (MQ=60)

                                                                 GGTACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAG                             >  SRR4302535.3334347/1‑94 (MQ=60)

                                                                  GTCCTGGTGCGGCTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGA                            <  SRR4302535.3332985/94‑1 (MQ=60)

                                                                   TACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAG                           <  SRR4302535.3069255/94‑1 (MQ=60)

                                                                    ACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGA                          >  SRR4302535.640739/1‑94 (MQ=60)

                                                                    ACTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGGTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCACACTGGCGCATAAAGAGA                          >  SRR4302535.1899883/1‑94 (MQ=60)

                                                                     CTGGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCG‑CAGTCAGGATTTCAAACTGGCGCATAAAGAGATC                        <  SRR4302535.1816951/94‑1 (MQ=60)

                                                                       GTTGCGCTTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCG                       <  SRR4302535.664292/94‑1 (MQ=60)

                                                                       GGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCG                       <  SRR4302535.1695144/94‑1 (MQ=60)

                                                                       GGTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCG                       <  SRR4302535.4436946/94‑1 (MQ=60)

                                                                        GTGCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGA                      >  SRR4302535.3143664/1‑94 (MQ=60)

                                                                          GCGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACC                    <  SRR4302535.3905790/94‑1 (MQ=60)

                                                                           GGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCA                   <  SRR4302535.1383001/94‑1 (MQ=60)

                                                                           CGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCCAACTGGCGCATAACGAGATAGACCA                   >  SRR4302535.235900/1‑94 (MQ=60)

                                                                           CGCGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCA                   >  SRR4302535.1128964/1‑94 (MQ=60)

                                                                             CGTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAA                 >  SRR4302535.843851/1‑94 (MQ=60)

                                                                              GTATTGTCACCAGCCGTGATGATGTCTGTTTGATTTAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAAT                <  SRR4302535.1154359/94‑1 (MQ=60)

                                                                              GTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAAT                >  SRR4302535.1733338/1‑94 (MQ=60)

                                                                              GTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAAT                >  SRR4302535.715062/1‑94 (MQ=60)

                                                                              GTATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAAT                >  SRR4302535.651622/1‑94 (MQ=60)

                                                                               TATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATC               >  SRR4302535.4294515/1‑94 (MQ=60)

                                                                               TATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATC               >  SRR4302535.1413240/1‑94 (MQ=60)

                                                                               TATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATC               >  SRR4302535.1343950/1‑94 (MQ=60)

                                                                                ATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATCC              <  SRR4302535.4013989/94‑1 (MQ=60)

                                                                                ATTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATCC              >  SRR4302535.1309480/1‑94 (MQ=60)

                                                                                 TTGTCACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATCCT             >  SRR4302535.984794/1‑94 (MQ=60)

                                                                                 TTGTCACCACCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCGGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATCCT             <  SRR4302535.2535565/94‑1 (MQ=60)

                                                                                     CACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGTGCATAAAGAGATCGACCAAATCCTGAAA         >  SRR4302535.2285178/1‑94 (MQ=60)

                                                                                     CACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATCCTGAAA         >  SRR4302535.816374/1‑94 (MQ=60)

                                                                                      ACCAGCCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATCCTGAAAC        >  SRR4302535.3916202/1‑94 (MQ=60)

                                                                                          GCCGCGATGATGTCTGTTTGATTAAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATCCTGAAACGCGC    <  SRR4302535.2820045/94‑1 (MQ=60)

                                                                                           CCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATCCTGAAACGCGCG   <  SRR4302535.4634891/94‑1 (MQ=60)

                                                                                           CCGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATCCTGAAACGCGCG   <  SRR4302535.2081837/94‑1 (MQ=60)

                                                                                            CGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATCCTGAAACGCGCGC  >  SRR4302535.1716183/1‑94 (MQ=60)

                                                                                            CGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATCCTGAAACGCGCGC  >  SRR4302535.3213191/1‑94 (MQ=60)

                                                                                            CGCGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATCCTGAAACGCGCGC  >  SRR4302535.420577/1‑94 (MQ=60)

TGCAACTGCGCTGTAGCTACACGCCGGATCAAGGTTCCACGCGCATTGAACGCGTGCTGGCCTCCGGTACTGGTGCGCGTATTGTCACCAGCCACGATGATGTCTGTTTGATTGAGTTTCAGGTGCCCGCCAGTCAGGATTTCAAACTGGCGCATAAAGAGATCGACCAAATCCTGAAACGCGCGC  >  NC_000913/4128262‑4128447

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`