Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,137,208	A→G	T27T (ACT→ACC)	talC ←	putative transaldolase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,137,208	0	A	G	100.0%	760.5 / NA	241	T27T (ACT→ACC)	talC	putative transaldolase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (125/116); total (125/116)

Only 100 of 260 total aligned reads displayed.

AAACAGAATGCCCTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTAGTTGTCACCCCGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCC  >  NC_000913/4137118‑4137297

aaaCAGAATGCCCTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGt                                                                                         <  1:843678/93‑1 (MQ=255)

 aaCAGAATGCCCTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGggttggtt                                                                                        <  1:4165272/93‑1 (MQ=255)

   cAGAATGCCCTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGt                                                                                      >  1:3874551/1‑93 (MQ=255)

    aGAATGCCCTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTc                                                                                     >  1:4441344/1‑93 (MQ=255)

     gAATGCCCTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCa                                                                                    >  2:1958150/1‑93 (MQ=255)

     gAATGCCCTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCa                                                                                    >  1:2980984/1‑93 (MQ=255)

      aaTGCCCTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCAc                                                                                   >  2:1849926/1‑93 (MQ=255)

      aaTGACCTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCAc                                                                                   <  1:35928/93‑1 (MQ=255)

          cccTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCAccctg                                                                               >  1:2933091/1‑91 (MQ=255)

          cccTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCAccctg                                                                               <  1:3475901/93‑3 (MQ=255)

            cTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGc                                                                             <  1:2477819/93‑1 (MQ=255)

             tcatcaCCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCa                                                                            >  2:2034725/1‑93 (MQ=255)

             tcatcaCCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCa                                                                            >  2:2659669/1‑93 (MQ=255)

             tcatcaCCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCa                                                                            >  1:3099226/1‑93 (MQ=255)

                  aCCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATggg                                                                       <  2:763581/93‑1 (MQ=255)

                  aCCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATggg                                                                       >  2:3406890/1‑93 (MQ=255)

                  aCCAATCGCTTTTTGCAGACGCGGCAGCACTTCACATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATggg                                                                       >  1:4232954/1‑93 (MQ=255)

                     aaTCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCGATGGGGaa                                                                    >  1:2752563/1‑93 (MQ=255)

                     aaTCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGaa                                                                    <  1:3547043/93‑1 (MQ=255)

                      aTCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAat                                                                   >  2:236346/1‑93 (MQ=255)

                       tCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAata                                                                  >  1:1154297/1‑93 (MQ=255)

                       tCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAata                                                                  <  2:3167345/93‑1 (MQ=255)

                        cGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAatat                                                                 <  1:643153/93‑1 (MQ=255)

                        cGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAatat                                                                 <  2:2425407/93‑1 (MQ=255)

                         gCTTTTTGCAGACGCGGCCGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGCATATg                                                                >  2:2726975/1‑93 (MQ=255)

                         gCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATg                                                                >  1:49111/1‑93 (MQ=255)

                         gCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATg                                                                >  2:4460337/1‑93 (MQ=255)

                         gCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGAGATAATGCTCGGGTTTGTTGTCACCCTGGCCATGGGGAATATg                                                                >  2:4415992/1‑93 (MQ=255)

                          cTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGc                                                               <  2:3119764/93‑1 (MQ=255)

                          cTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGc                                                               >  1:3255614/1‑93 (MQ=255)

                           tttttGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCg                                                              >  2:4169189/1‑93 (MQ=255)

                           tttttGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCg                                                              >  1:1738447/1‑93 (MQ=255)

                             tttGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTg                                                            <  2:3777665/93‑1 (MQ=255)

                             tttGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTg                                                            <  2:1388821/93‑1 (MQ=255)

                              ttGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGc                                                           >  1:2237994/1‑93 (MQ=255)

                                gCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCa                                                         <  2:1202001/93‑1 (MQ=255)

                                gCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCa                                                         <  1:1582993/93‑1 (MQ=255)

                                   gACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGAc                                                      <  2:1550391/93‑1 (MQ=255)

                                   gACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGAc                                                      >  1:797305/1‑93 (MQ=255)

                                   gACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGAc                                                      >  1:4283175/1‑93 (MQ=255)

                                   gACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGAc                                                      >  1:4316367/1‑93 (MQ=255)

                                     cgcgGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGt                                                    >  1:307536/1‑93 (MQ=255)

                                      gcgGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGtt                                                   <  2:4277437/93‑1 (MQ=255)

                                       cgGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTc                                                  >  2:3502020/1‑93 (MQ=255)

                                         gcagcaCTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGa                                                <  2:3277550/93‑1 (MQ=255)

                                          cagcaCTTCCCATATGGTCTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGAc                                               <  1:334363/93‑1 (MQ=255)

                                           agcaCTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACt                                              >  2:3329658/1‑93 (MQ=255)

                                            gcaCTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACtt                                             >  1:1855450/1‑93 (MQ=255)

                                             caCTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTc                                            <  1:914532/93‑1 (MQ=255)

                                              aCTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCt                                           >  2:1670277/1‑93 (MQ=255)

                                               cTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTg                                          <  2:3564706/93‑1 (MQ=255)

                                               cTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTg                                          >  2:290477/1‑93 (MQ=255)

                                                 tCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCg                                        >  1:3154393/1‑93 (MQ=255)

                                                  cccATATGGTCTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGa                                       <  1:817571/93‑1 (MQ=255)

                                                  cccATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGa                                       >  2:2132628/1‑93 (MQ=255)

                                                  cccATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGa                                       >  2:1160792/1‑93 (MQ=255)

                                                  cccATATGGACTCCTGGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGa                                       <  2:2853124/93‑1 (MQ=255)

                                                   ccATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGAc                                      >  2:3935390/1‑93 (MQ=255)

                                                    cATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACg                                     <  2:494291/93‑1 (MQ=255)

                                                      tatGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGtt                                   >  2:400455/1‑93 (MQ=255)

                                                        tGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAg                                 >  1:2874123/1‑93 (MQ=255)

                                                        tGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAg                                 >  1:1222255/1‑93 (MQ=255)

                                                          gACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCg                               >  2:1049465/1‑93 (MQ=255)

                                                          gACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCg                               <  1:4129564/93‑1 (MQ=255)

                                                            cTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGgt                             >  1:1415287/1‑93 (MQ=255)

                                                             tCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGgtg                            >  1:1363188/1‑93 (MQ=255)

                                                             tCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACATTCGACTTCTGCGACGTTACCGgtg                            >  1:3368267/1‑93 (MQ=255)

                                                               cTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTc                          >  2:870171/1‑93 (MQ=255)

                                                               cTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTc                          <  2:3771458/93‑1 (MQ=255)

                                                                ttGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTcc                         >  1:4506004/1‑93 (MQ=255)

                                                                 tGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCa                        <  1:523166/93‑1 (MQ=255)

                                                                   cTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGa                      <  1:2154217/93‑1 (MQ=255)

                                                                   cTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGa                      <  1:893390/93‑1 (MQ=255)

                                                                    tGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGGCTTCTGCGACGTTAGCGGTGTCCAGAt                     >  1:3943352/1‑93 (MQ=255)

                                                                    tGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCAAGCGGTTCCACTTCTGAGACGTTAGCGGCGTCCCGac                     >  1:1049169/1‑92 (MQ=255)

                                                                     ggCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATa                    >  1:571673/1‑93 (MQ=255)

                                                                      gCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATAc                   <  2:2978722/93‑1 (MQ=255)

                                                                       cAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACa                  >  1:4477440/1‑93 (MQ=255)

                                                                        aGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGGCTTCTGCGACGTTAGCGGTGTCCAGATACAg                 <  1:2043222/93‑1 (MQ=255)

                                                                        aGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAg                 <  2:2408448/93‑1 (MQ=255)

                                                                        aGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAg                 >  1:2399923/1‑93 (MQ=255)

                                                                         gCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACTTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGt                <  2:2275585/93‑1 (MQ=255)

                                                                         gCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGt                <  1:2132705/93‑1 (MQ=255)

                                                                         gCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGt                <  1:2532384/93‑1 (MQ=255)

                                                                         gCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGt                >  2:3884111/1‑93 (MQ=255)

                                                                            aTAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTcc             >  1:4384695/1‑93 (MQ=255)

                                                                             tAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCa            <  1:2645988/93‑1 (MQ=255)

                                                                             tAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCa            <  2:147042/93‑1 (MQ=255)

                                                                              aaTGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCat           <  1:4112543/93‑1 (MQ=255)

                                                                              aaTGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCat           >  2:1340158/1‑93 (MQ=255)

                                                                              aaTGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTACat           >  2:3244015/1‑93 (MQ=255)

                                                                               aTGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCatg          >  1:1027432/1‑93 (MQ=255)

                                                                                tGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCatga         >  1:3849355/1‑93 (MQ=255)

                                                                                 gCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCatgat        <  1:1809890/93‑1 (MQ=255)

                                                                                   tCGGGTTGGTTGTCACCCTGGCAATGGGGGATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGGGTCCAGATACAGTTCCATGATGt      >  2:2765878/1‑93 (MQ=255)

                                                                                    cGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGtt     <  2:4062796/93‑1 (MQ=255)

                                                                                    cGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGtt     <  1:2331166/93‑1 (MQ=255)

                                                                                    cGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGtt     <  1:2731761/93‑1 (MQ=255)

                                                                                     gggTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGttt    >  1:1290028/1‑93 (MQ=255)

                                                                                       gttggttgTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTcc  >  2:3724903/1‑93 (MQ=255)

AAACAGAATGCCCTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTAGTTGTCACCCCGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCC  >  NC_000913/4137118‑4137297

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AGCAAACAGAATGCCCTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTAGTTGTCACCCCGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCTTT  >  NC_000913/4137115‑4137300

AGCAAACAGAATGCCCTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTG                                                                                              <  SRR4302535.3866867/94‑1 (MQ=60)

 GCAAACAGAATGCCCTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGG                                                                                             <  SRR4302535.3022407/94‑1 (MQ=60)

  CAAACAGAATGCCCTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGT                                                                                            >  SRR4302535.3891319/1‑94 (MQ=60)

  CAAACAGAATGCCCTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGT                                                                                            <  SRR4302535.1954324/94‑1 (MQ=60)

   AAACAGAATGCCCTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTT                                                                                           <  SRR4302535.2765226/94‑1 (MQ=60)

   AAACAGAATGCCCTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTT                                                                                           <  SRR4302535.3367912/94‑1 (MQ=60)

   AAACAGAATGCCCTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTT                                                                                           >  SRR4302535.298155/1‑94 (MQ=60)

   AAACAGAATGCCCTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTT                                                                                           <  SRR4302535.849607/94‑1 (MQ=60)

    AACAGAATGCCCTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTG                                                                                          <  SRR4302535.1209364/94‑1 (MQ=60)

    AACAGAATGCCCTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTG                                                                                          <  SRR4302535.4193794/94‑1 (MQ=60)

     ACAGAATGCCCTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGT                                                                                         >  SRR4302535.3901173/1‑94 (MQ=60)

      CAGAATGCCCTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTC                                                                                        >  SRR4302535.4471796/1‑94 (MQ=60)

       AGAATGCCCTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGCCTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCA                                                                                       <  SRR4302535.4587020/94‑1 (MQ=60)

       AGAATGCCCTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCA                                                                                       >  SRR4302535.3001894/1‑94 (MQ=60)

        AAATGCCCTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCAC                                                                                      <  SRR4302535.808448/94‑1 (MQ=60)

         AATGACCTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACC                                                                                     <  SRR4302535.36204/94‑1 (MQ=60)

           TGCCCTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCT                                                                                   <  SRR4302535.2796157/94‑1 (MQ=60)

            GCCCTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTG                                                                                  >  SRR4302535.2953737/1‑94 (MQ=60)

             CCCTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGG                                                                                 <  SRR4302535.3500057/94‑1 (MQ=60)

              CCTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGC                                                                                <  SRR4302535.105338/94‑1 (MQ=60)

               CTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCA                                                                               >  SRR4302535.527112/1‑94 (MQ=60)

               CTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCA                                                                               >  SRR4302535.3120804/1‑94 (MQ=60)

               CTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCA                                                                               <  SRR4302535.2495690/94‑1 (MQ=60)

               CTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCA                                                                               >  SRR4302535.2518409/1‑94 (MQ=60)

                TCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAA                                                                              >  SRR4302535.3957555/1‑94 (MQ=60)

                 CATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAAT                                                                             >  SRR4302535.4147169/1‑94 (MQ=60)

                 CATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAAT                                                                             <  SRR4302535.1538114/94‑1 (MQ=60)

                 CATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAAT                                                                             <  SRR4302535.3194950/94‑1 (MQ=60)

                 CATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAAT                                                                             <  SRR4302535.3338327/94‑1 (MQ=60)

                  ATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATG                                                                            >  SRR4302535.4510584/1‑94 (MQ=60)

                  ATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATG                                                                            <  SRR4302535.91194/94‑1 (MQ=60)

                    CACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGG                                                                          <  SRR4302535.4438898/94‑1 (MQ=60)

                    CACCAATCGCTTTTTGCAGACGCGGCAGCACTTCACATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGG                                                                          >  SRR4302535.4261921/1‑94 (MQ=60)

                     ACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGG                                                                         <  SRR4302535.577322/94‑1 (MQ=60)

                       CAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCGATGGGGAA                                                                       >  SRR4302535.2772179/1‑94 (MQ=60)

                       CAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAA                                                                       >  SRR4302535.4335855/1‑94 (MQ=60)

                       CAAACGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAA                                                                       <  SRR4302535.3112625/94‑1 (MQ=60)

                        AATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAAT                                                                      <  SRR4302535.4187415/94‑1 (MQ=60)

                        AATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAAT                                                                      <  SRR4302535.3571669/94‑1 (MQ=60)

                         ATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATA                                                                     >  SRR4302535.1162548/1‑94 (MQ=60)

                         ATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATA                                                                     >  SRR4302535.2400917/1‑94 (MQ=60)

                          TCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATAT                                                                    <  SRR4302535.4500077/94‑1 (MQ=60)

                           CGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATG                                                                   >  SRR4302535.2165286/1‑94 (MQ=60)

                           CGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATG                                                                   <  SRR4302535.647642/94‑1 (MQ=60)

                           CGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATG                                                                   >  SRR4302535.49481/1‑94 (MQ=60)

                           CGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATG                                                                   >  SRR4302535.2649663/1‑94 (MQ=60)

                            GCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGC                                                                  >  SRR4302535.3278232/1‑94 (MQ=60)

                            GCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGC                                                                  >  SRR4302535.4495340/1‑94 (MQ=60)

                             CTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCG                                                                 >  SRR4302535.1751013/1‑94 (MQ=60)

                             CTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCG                                                                 >  SRR4302535.3525597/1‑94 (MQ=60)

                             CTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCG                                                                 >  SRR4302535.4257631/1‑94 (MQ=60)

                               TTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTG                                                               <  SRR4302535.2206738/94‑1 (MQ=60)

                                TTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGC                                                              >  SRR4302535.2253917/1‑94 (MQ=60)

                                 TTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCC                                                             <  SRR4302535.1772142/94‑1 (MQ=60)

                                  TGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCA                                                            >  SRR4302535.2195972/1‑94 (MQ=60)

                                  TGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCA                                                            >  SRR4302535.1769178/1‑94 (MQ=60)

                                   GCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAG                                                           <  SRR4302535.1594418/94‑1 (MQ=60)

                                   GCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAG                                                           <  SRR4302535.1108730/94‑1 (MQ=60)

                                    CAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGA                                                          <  SRR4302535.738761/94‑1 (MQ=60)

                                     AGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGAC                                                         <  SRR4302535.1827904/94‑1 (MQ=60)

                                     AGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGAC                                                         >  SRR4302535.4312478/1‑94 (MQ=60)

                                     AGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGAC                                                         >  SRR4302535.825930/1‑94 (MQ=60)

                                     AGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGAC                                                         >  SRR4302535.802904/1‑94 (MQ=60)

                                     AGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGAC                                                         >  SRR4302535.1584790/1‑94 (MQ=60)

                                     AGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGAC                                                         >  SRR4302535.4345896/1‑94 (MQ=60)

                                      GACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACG                                                        >  SRR4302535.572962/1‑94 (MQ=60)

                                      GACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACG                                                        <  SRR4302535.4190356/94‑1 (MQ=60)

                                       ACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGT                                                       <  SRR4302535.1085423/94‑1 (MQ=60)

                                       ACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGT                                                       >  SRR4302535.309664/1‑94 (MQ=60)

                                        CGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTT                                                      <  SRR4302535.3579924/94‑1 (MQ=60)

                                        CGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTT                                                      <  SRR4302535.3033192/94‑1 (MQ=60)

                                          CGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCG                                                    <  SRR4302535.907397/94‑1 (MQ=60)

                                           GGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGC                                                   >  SRR4302535.2672940/1‑94 (MQ=60)

                                             CAGCACTTCCCATATGGTCTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACT                                                 <  SRR4302535.336676/94‑1 (MQ=60)

                                             CAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACT                                                 <  SRR4302535.33073/94‑1 (MQ=60)

                                              AGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTT                                                <  SRR4302535.389538/94‑1 (MQ=60)

                                              AGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTT                                                >  SRR4302535.1868816/1‑94 (MQ=60)

                                               GCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTC                                               <  SRR4302535.2479020/94‑1 (MQ=60)

                                                CACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCT                                              <  SRR4302535.921027/94‑1 (MQ=60)

                                                CACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCT                                              >  SRR4302535.2960766/1‑94 (MQ=60)

                                                   TTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCG                                           <  SRR4302535.864201/94‑1 (MQ=60)

                                                   TTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCG                                           >  SRR4302535.3176307/1‑94 (MQ=60)

                                                    TCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGA                                          >  SRR4302535.1839243/1‑94 (MQ=60)

                                                     CCCATATGGTCTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGAC                                         <  SRR4302535.823308/94‑1 (MQ=60)

                                                     CCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGAC                                         >  SRR4302535.2120827/1‑94 (MQ=60)

                                                     CCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGAC                                         <  SRR4302535.4373049/94‑1 (MQ=60)

                                                      CCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACG                                        <  SRR4302535.4291504/94‑1 (MQ=60)

                                                       CATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGT                                       >  SRR4302535.644108/1‑94 (MQ=60)

                                                        ATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTT                                      >  SRR4302535.89416/1‑94 (MQ=60)

                                                          ATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAG                                    >  SRR4302535.1231007/1‑94 (MQ=60)

                                                          ATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAG                                    >  SRR4302535.2894488/1‑94 (MQ=60)

                                                             GACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGG                                 <  SRR4302535.4157821/94‑1 (MQ=60)

                                                             GACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGG                                 <  SRR4302535.4341526/94‑1 (MQ=60)

                                                              ACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGT                                >  SRR4302535.1425392/1‑94 (MQ=60)

                                                              ACTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGT                                >  SRR4302535.2686477/1‑94 (MQ=60)

                                                               CTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTG                               >  SRR4302535.1372938/1‑94 (MQ=60)

                                                               CTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTG                               >  SRR4302535.1383440/1‑94 (MQ=60)

                                                               CTCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACATTCGACTTCTGCGACGTTACCGGTG                               >  SRR4302535.3391704/1‑94 (MQ=60)

                                                                TCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGT                              >  SRR4302535.128638/1‑94 (MQ=60)

                                                                TCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGT                              >  SRR4302535.3874377/1‑94 (MQ=60)

                                                                TCCTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGT                              >  SRR4302535.3974479/1‑94 (MQ=60)

                                                                  CTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCC                            <  SRR4302535.4701959/94‑1 (MQ=60)

                                                                  CTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCC                            >  SRR4302535.2343668/1‑94 (MQ=60)

                                                                  CTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCC                            >  SRR4302535.813556/1‑94 (MQ=60)

                                                                  CTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCC                            >  SRR4302535.4536936/1‑94 (MQ=60)

                                                                  CTTGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCC                            >  SRR4302535.3027548/1‑94 (MQ=60)

                                                                    TGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAG                          <  SRR4302535.3649160/94‑1 (MQ=60)

                                                                    TGCTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAG                          <  SRR4302535.526825/94‑1 (MQ=60)

                                                                      CTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGGCTTCTGCGACGTTAGCGGTGTCCAGAT                        >  SRR4302535.3970273/1‑94 (MQ=60)

                                                                      CTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGAT                        <  SRR4302535.2169698/94‑1 (MQ=60)

                                                                      CTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGAT                        <  SRR4302535.899720/94‑1 (MQ=60)

                                                                      CTGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCAAGCGGTTCCACTTCTGAGACGTTAGCGGcgtcccgac                        >  SRR4302535.1056633/1‑85 (MQ=60)

                                                                       TGGCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATA                       >  SRR4302535.575687/1‑94 (MQ=60)

                                                                         GCAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACA                     >  SRR4302535.4508182/1‑94 (MQ=60)

                                                                          CAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAG                    >  SRR4302535.2417183/1‑94 (MQ=60)

                                                                          CAGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAG                    <  SRR4302535.2890075/94‑1 (MQ=60)

                                                                           AGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGGCTTCTGCGACGTTAGCGGTGTCCAGATACAGT                   <  SRR4302535.2057942/94‑1 (MQ=60)

                                                                           AGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGT                   <  SRR4302535.52582/94‑1 (MQ=60)

                                                                           AGCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGT                   <  SRR4302535.2612095/94‑1 (MQ=60)

                                                                            GCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTT                  <  SRR4302535.2148077/94‑1 (MQ=60)

                                                                            GCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTT                  <  SRR4302535.2148078/94‑1 (MQ=60)

                                                                            GCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTT                  <  SRR4302535.2550630/94‑1 (MQ=60)

                                                                            GCGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTT                  <  SRR4302535.3162983/94‑1 (MQ=60)

                                                                             CGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTC                 >  SRR4302535.1294399/1‑94 (MQ=60)

                                                                             CGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTC                 >  SRR4302535.2057666/1‑94 (MQ=60)

                                                                             CGATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTC                 >  SRR4302535.2465831/1‑94 (MQ=60)

                                                                              GATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCC                >  SRR4302535.4414696/1‑94 (MQ=60)

                                                                               ATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCA               >  SRR4302535.2339821/1‑94 (MQ=60)

                                                                               ATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCA               >  SRR4302535.1718312/1‑94 (MQ=60)

                                                                               ATAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCA               <  SRR4302535.1347859/94‑1 (MQ=60)

                                                                                TAATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCAT              <  SRR4302535.2664939/94‑1 (MQ=60)

                                                                                 AATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATG             >  SRR4302535.1034728/1‑94 (MQ=60)

                                                                                 AATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATG             <  SRR4302535.4140692/94‑1 (MQ=60)

                                                                                  ATGCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGA            >  SRR4302535.3875846/1‑94 (MQ=60)

                                                                                   TGCTCGGGTTGGTTGTCACCCTGGAAATGGGGAATATGCGTGCCAGACGTTCGAATTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGAT           <  SRR4302535.4455777/94‑1 (MQ=60)

                                                                                    GCTCGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATG          <  SRR4302535.1822982/94‑1 (MQ=60)

                                                                                       CGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTT       <  SRR4302535.2751263/94‑1 (MQ=60)

                                                                                       CGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTT       >  SRR4302535.1299219/1‑94 (MQ=60)

                                                                                       CGGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTT       <  SRR4302535.2347839/94‑1 (MQ=60)

                                                                                        GGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTC      <  SRR4302535.3123326/94‑1 (MQ=60)

                                                                                        GGGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTC      <  SRR4302535.2916140/94‑1 (MQ=60)

                                                                                         GGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCT     >  SRR4302535.3475081/1‑94 (MQ=60)

                                                                                         GGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCT     >  SRR4302535.4031876/1‑94 (MQ=60)

                                                                                         GGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCC     <  SRR4302535.4194336/94‑1 (MQ=60)

                                                                                         GGTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCC     >  SRR4302535.1350006/1‑94 (MQ=60)

                                                                                          GTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCT    >  SRR4302535.485162/1‑94 (MQ=60)

                                                                                          GTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCT    <  SRR4302535.3389984/94‑1 (MQ=60)

                                                                                          GTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCT    >  SRR4302535.3429282/1‑94 (MQ=60)

                                                                                          GTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCT    <  SRR4302535.3507414/94‑1 (MQ=60)

                                                                                          GTTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCT    >  SRR4302535.3693149/1‑94 (MQ=60)

                                                                                           TTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCTT   <  SRR4302535.2203788/94‑1 (MQ=60)

                                                                                           TTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCTT   >  SRR4302535.3111922/1‑94 (MQ=60)

                                                                                           TTGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCTT   <  SRR4302535.1462807/94‑1 (MQ=60)

                                                                                            TGGTTGTCACCCTGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCTTT  <  SRR4302535.4370607/94‑1 (MQ=60)

AGCAAACAGAATGCCCTCATCACCAATCGCTTTTTGCAGACGCGGCAGCACTTCCCATATGGACTCCTTGCTGGCAGCGATAATGCTCGGGTTAGTTGTCACCCCGGCAATGGGGAATATGCGTGCCAGACGTTCGACTTCTGCGACGTTAGCGGTGTCCAGATACAGTTCCATGATGTTTCCTTT  >  NC_000913/4137115‑4137300

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`