Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate | Predicted Mutations | Mean Coverage | Total Reads | Percent Mapped | Mapped Reads | Average Read Length |
|---|---|---|---|---|---|---|
| A1 F1 I2 R1 | 1873 | 183.1 | 9376148 | 98.2% | 9207377 | 93.0 |
Breseq alignment
| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,139,669 | +C | coding (233/330 nt) coding (132/159 nt) |
yijI → b4558 ← |
hypothetical protein hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,139,667 | 1 | . | C | 99.6% | 804.0 / ‑3.8 | 254 | coding (231/330 nt) coding (134/159 nt) | yijI b4558 | hypothetical protein hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base C (120/133); total (121/133) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.76e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 | |||||||||||
Only 100 of 289 total aligned reads displayed.
GCTTCCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTG‑CCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCAT > NC_000913/4139575‑4139754 | cTTCCTGTGCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTG‑c < 2:3944749/93‑1 (MQ=255) ttCCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTG‑cc > 1:181578/1‑93 (MQ=255) ccTGTTCGTCGGCCCCGGAAATCTGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTG‑ccct < 2:3249047/93‑3 (MQ=255) ccTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTG‑ccct < 2:3965699/93‑3 (MQ=255) cTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTG‑ccctt < 1:1297981/93‑4 (MQ=255) cTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTG‑ccctt < 2:4603655/93‑4 (MQ=255) cTGTACGTCGGCACCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTG‑ccctt < 2:2748429/93‑4 (MQ=255) tGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTG‑cccttg > 2:4335977/1‑89 (MQ=255) tGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTG‑cccttg > 2:1411473/1‑89 (MQ=255) tGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTG‑cccttg > 2:4444900/1‑89 (MQ=255) gtcgGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTc > 2:1019517/1‑93 (MQ=255) tcgGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTTCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCa < 1:3300747/93‑1 (MQ=255) ggCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGt < 1:3132754/93‑1 (MQ=255) ccccGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTgc < 1:862808/93‑1 (MQ=255) cccGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTgcg > 1:20291/1‑93 (MQ=255) cccGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTgcg > 2:742925/1‑93 (MQ=255) ccGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTgcgc > 2:2348722/1‑93 (MQ=255) ggAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAg < 2:2048402/93‑1 (MQ=255) ggAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAg < 2:2968303/93‑1 (MQ=255) gAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAgg > 1:4425821/1‑93 (MQ=255) aaaTCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGt > 1:3211903/1‑93 (MQ=255) aaTCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGtt > 2:119054/1‑93 (MQ=255) aaTCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGtt > 1:3192008/1‑93 (MQ=255) aaTCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTCTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGtt > 1:2470417/1‑93 (MQ=255) aTCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTa > 2:1330403/1‑93 (MQ=255) tCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTAt > 2:4360252/1‑93 (MQ=255) tCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTAt < 1:1710307/93‑1 (MQ=255) cAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATg < 1:2065592/93‑1 (MQ=255) aGTAAGTGGAGGTGATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGc < 2:1847706/93‑1 (MQ=255) aGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGc > 1:1184216/1‑93 (MQ=255) aGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGc > 1:2628287/1‑93 (MQ=255) aGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGc < 2:1458051/93‑1 (MQ=255) gTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGcc < 1:1824176/93‑1 (MQ=255) aaCTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCAc < 2:1070323/93‑1 (MQ=255) cTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTc > 2:4177172/1‑93 (MQ=255) tGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCa > 2:112987/1‑93 (MQ=255) ggCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCaa < 2:363541/93‑1 (MQ=255) ggCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCaa > 2:3429477/1‑93 (MQ=255) ggCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGCGCGCAGGTTATGCCACTCaa > 1:3456764/1‑93 (MQ=255) gCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAAt > 2:3032868/1‑93 (MQ=255) gCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAAt > 2:3155934/1‑93 (MQ=255) gCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAAt < 1:3019941/93‑1 (MQ=255) gTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTtg > 1:355737/1‑93 (MQ=255) gTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTtg < 2:2288357/93‑1 (MQ=255) gTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTtg < 1:2793490/93‑1 (MQ=255) ttATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTtgt > 1:3366620/1‑93 (MQ=255) ttATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTtgt > 2:1165638/1‑93 (MQ=255) tATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTtgtg < 2:1652113/93‑1 (MQ=255) accgcccgccAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGtga < 2:4092090/91‑1 (MQ=255) tCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGtgat < 2:2168901/93‑1 (MQ=255) tCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGtgat < 1:94140/93‑1 (MQ=255) tCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGtgat < 2:1240124/93‑1 (MQ=255) gcccgccAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGtgatga > 2:580255/1‑93 (MQ=255) cgccAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGaaaa < 2:832174/93‑1 (MQ=255) ccAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAg < 1:1991939/93‑1 (MQ=255) aGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTa > 2:1259576/1‑93 (MQ=255) aGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTa < 1:2890954/93‑1 (MQ=255) gCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTAt > 2:3783680/1‑93 (MQ=255) gCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTAt > 1:4172466/1‑93 (MQ=255) gCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTAt > 1:3057583/1‑93 (MQ=255) cGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTAtt < 1:4531155/93‑1 (MQ=255) gTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTa > 2:1986590/1‑93 (MQ=255) gTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTa > 1:3161574/1‑93 (MQ=255) tataGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTac < 1:1386367/93‑1 (MQ=255) tATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTac > 1:796797/1‑93 (MQ=255) tATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTac < 1:3609900/93‑1 (MQ=255) aTCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTaca > 1:386881/1‑93 (MQ=255) tCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTacac > 1:1553987/1‑93 (MQ=255) tCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTacac > 2:80247/1‑93 (MQ=255) tCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTacac < 1:46161/93‑1 (MQ=255) cGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTAcaca < 1:3501148/93‑1 (MQ=255) cGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTAcaca > 2:3597785/1‑93 (MQ=255) cGGTGCCAATCAACGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTAcaca < 1:3718970/93‑1 (MQ=255) gTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCTCTCAATTTGTGATGAAAAAGTATTACACAGc < 1:2529600/93‑1 (MQ=255) gTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGc > 1:1894639/1‑93 (MQ=255) gCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGt < 2:3890092/93‑1 (MQ=255) ccAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGtt < 1:4335219/93‑1 (MQ=255) cAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGttt < 2:2669652/93‑1 (MQ=255) aaTCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTc < 1:220136/93‑1 (MQ=255) aTCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCa > 1:592520/1‑93 (MQ=255) tCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCaa < 2:4291731/93‑1 (MQ=255) aGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACg < 1:105648/93‑1 (MQ=255) aGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACg < 2:499914/93‑1 (MQ=255) gcgcAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGt < 2:3121346/93‑1 (MQ=255) cAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGc > 1:2121715/1‑93 (MQ=255) aaGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCt < 1:1015603/93‑1 (MQ=255) aGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCtt > 2:2915892/1‑93 (MQ=255) gggCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTg > 1:2387310/1‑93 (MQ=255) gggCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTg > 2:2508897/1‑93 (MQ=255) gggCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTg > 2:2036551/1‑93 (MQ=255) ggCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGc < 2:2703343/93‑1 (MQ=255) gcgcTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGcc > 2:3299319/1‑93 (MQ=255) gcgcTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGcc < 1:1483125/93‑1 (MQ=255) cTTTTGNCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGa < 1:4084869/93‑1 (MQ=255) cTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGa < 1:3592444/93‑1 (MQ=255) ttttGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGAc > 2:3458231/1‑93 (MQ=255) tttGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGaag > 2:1921920/1‑91 (MQ=255) tGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGAcgcg < 1:2747715/93‑1 (MQ=255) gCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCa < 1:1646921/93‑1 (MQ=255) cGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCAt > 2:4128050/1‑93 (MQ=255) | GCTTCCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTG‑CCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCAT > NC_000913/4139575‑4139754 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
CTTCCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTG‑CC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCATGTACGC > NC_000913/4139576‑4139760 | CTTCCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTG‑CC > SRR4302535.3360677/1‑94 (MQ=60)CTTCCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTG‑CC > SRR4302535.182836/1‑94 (MQ=60)CTTCCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTG‑CC < SRR4302535.4666566/94‑1 (MQ=60) TTCCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTG‑CC‑C > SRR4302535.2024641/1‑94 (MQ=60) TTCCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTG‑CC‑C > SRR4302535.419557/1‑94 (MQ=60) TCCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTG‑CC‑CT < SRR4302535.1044625/94‑1 (MQ=60) CCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTG‑CCctt < SRR4302535.2689612/94‑4 (MQ=60) CCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTG‑CCctt > SRR4302535.321670/1‑91 (MQ=60) CCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTG‑CCctt < SRR4302535.3461640/94‑4 (MQ=60) CCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTG‑CCctt > SRR4302535.944271/1‑91 (MQ=60) CTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTG < SRR4302535.2974320/94‑1 (MQ=60) CTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTG > SRR4302535.209468/1‑94 (MQ=60) CTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTG < SRR4302535.1307238/94‑1 (MQ=60) CGTTCGTCGGCCCCGGAAATCAGTAACGGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGC < SRR4302535.4511054/94‑1 (MQ=60) TTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCG < SRR4302535.3833936/94‑1 (MQ=60) GTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCG < SRR4302535.4552149/94‑1 (MQ=60) GTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCG > SRR4302535.278905/1‑94 (MQ=60) GTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCG < SRR4302535.3520121/94‑1 (MQ=60) TCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTTCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAG < SRR4302535.3323699/94‑1 (MQ=60) CGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGT < SRR4302535.138273/94‑1 (MQ=60) CGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGT < SRR4302535.882809/94‑1 (MQ=60) TGCCCCGGAAATCAGTAACTGACAGTTATCTCCCGCCAGCGTATCTGTGCCAATCAGCGCAAGGGCTCTTTTGGCGTTGCCC‑TTGCGGTCAGTG < SRR4302535.3002475/94‑1 (MQ=60) GGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTG > SRR4302535.832442/1‑94 (MQ=60) GGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTG < SRR4302535.3154570/94‑1 (MQ=60) GCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTG‑CCcttgcaccacgcag < SRR4302535.2861303/94‑15 (MQ=60) CCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCG < SRR4302535.868908/94‑1 (MQ=60) CCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCG > SRR4302535.20442/1‑94 (MQ=60) CCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCA > SRR4302535.3068492/1‑94 (MQ=60) CCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCA > SRR4302535.3836156/1‑94 (MQ=60) GGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGG < SRR4302535.2943370/94‑1 (MQ=60) GGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGG > SRR4302535.4456138/1‑94 (MQ=60) GAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGT > SRR4302535.1617376/1‑94 (MQ=60) GAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGT > SRR4302535.3234147/1‑94 (MQ=60) GAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGT > SRR4302535.3502533/1‑94 (MQ=60) GAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGT > SRR4302535.1808334/1‑94 (MQ=60) AAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTT > SRR4302535.3876255/1‑94 (MQ=60) AAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTT > SRR4302535.3214090/1‑94 (MQ=60) AAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTT > SRR4302535.987960/1‑94 (MQ=60) AAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTT > SRR4302535.4283036/1‑94 (MQ=60) AAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTCTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTT > SRR4302535.2488228/1‑94 (MQ=60) AATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTA > SRR4302535.3489274/1‑94 (MQ=60) AATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTA > SRR4302535.4223742/1‑94 (MQ=60) AATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTA > SRR4302535.3725103/1‑94 (MQ=60) ATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTAT < SRR4302535.1502586/94‑1 (MQ=60) ATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTAT < SRR4302535.313444/94‑1 (MQ=60) ATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTAT > SRR4302535.1675244/1‑94 (MQ=60) TCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCTTTGCCC‑TTGCGGTCAGTGCGCAGGTTATG < SRR4302535.2483625/94‑1 (MQ=60) TCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATG < SRR4302535.2519377/94‑1 (MQ=60) TCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATG < SRR4302535.1881431/94‑1 (MQ=60) TCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATG < SRR4302535.1722671/94‑1 (MQ=60) CAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGC < SRR4302535.2080482/94‑1 (MQ=60) CAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGC > SRR4302535.1192676/1‑94 (MQ=60) CAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGC > SRR4302535.2647120/1‑94 (MQ=60) CAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGC < SRR4302535.4148996/94‑1 (MQ=60) GTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCA < SRR4302535.1837347/94‑1 (MQ=60) TAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCAC > SRR4302535.162420/1‑94 (MQ=60) AACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACT > SRR4302535.3172111/1‑94 (MQ=60) AACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACT > SRR4302535.3154091/1‑94 (MQ=60) AACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACT < SRR4302535.1441896/94‑1 (MQ=60) CTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCA < SRR4302535.4532738/94‑1 (MQ=60) TGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGCGCGCAGGTTATGCCACTCAA > SRR4302535.3480793/1‑94 (MQ=60) GGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAAT < SRR4302535.273479/94‑1 (MQ=60) GCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATT < SRR4302535.3168898/94‑1 (MQ=60) GCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATT < SRR4302535.3041091/94‑1 (MQ=60) CAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTT < SRR4302535.1331107/94‑1 (MQ=60) CAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTT < SRR4302535.3313949/94‑1 (MQ=60) AGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTG > SRR4302535.358189/1‑94 (MQ=60) GTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGT > SRR4302535.3390047/1‑94 (MQ=60) GTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGT < SRR4302535.2813368/94‑1 (MQ=60) TATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGA > SRR4302535.1238104/1‑94 (MQ=60) TATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGA > SRR4302535.2273154/1‑94 (MQ=60) TATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGA < SRR4302535.4397388/94‑1 (MQ=60) ACCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGAT < SRR4302535.3220223/94‑1 (MQ=60) TCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATG < SRR4302535.94810/94‑1 (MQ=60) GCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAA < SRR4302535.2612151/94‑1 (MQ=60) CCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAA < SRR4302535.207748/94‑1 (MQ=60) CCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAA < SRR4302535.4371503/94‑1 (MQ=60) CCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAA > SRR4302535.3583224/1‑94 (MQ=60) GCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAG < SRR4302535.409354/94‑1 (MQ=60) GCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAG < SRR4302535.3581801/94‑1 (MQ=60) CCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGT < SRR4302535.2006280/94‑1 (MQ=60) CAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTA > SRR4302535.3210161/1‑94 (MQ=60) AGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTAT < SRR4302535.2911407/94‑1 (MQ=60) AGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTAT > SRR4302535.3078975/1‑94 (MQ=60) AGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTAT > SRR4302535.4201026/1‑94 (MQ=60) AGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTAT > SRR4302535.3367760/1‑94 (MQ=60) GCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATT < SRR4302535.3393288/94‑1 (MQ=60) GCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATT < SRR4302535.1074400/94‑1 (MQ=60) GCGTAGCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGGTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATT < SRR4302535.1952916/94‑1 (MQ=60) CGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTA > SRR4302535.3183504/1‑94 (MQ=60) CGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTA < SRR4302535.4562171/94‑1 (MQ=60) CGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTA > SRR4302535.1933090/1‑94 (MQ=60) GTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTAC > SRR4302535.802392/1‑94 (MQ=60) GTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTAC < SRR4302535.1084369/94‑1 (MQ=60) GTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTAC > SRR4302535.1797061/1‑94 (MQ=60) TATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACA < SRR4302535.3634937/94‑1 (MQ=60) TATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACA > SRR4302535.389569/1‑94 (MQ=60) TATAGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACA < SRR4302535.1396262/94‑1 (MQ=60) ATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACAC > SRR4302535.3622029/1‑94 (MQ=60) ATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACAC > SRR4302535.1565184/1‑94 (MQ=60) ATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACAC < SRR4302535.1441011/94‑1 (MQ=60) TCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACA < SRR4302535.46511/94‑1 (MQ=60) TCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACA < SRR4302535.3069530/94‑1 (MQ=60) CGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAG < SRR4302535.3525488/94‑1 (MQ=60) CGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAG < SRR4302535.2817084/94‑1 (MQ=60) CGGTGCCAATCAACGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAG < SRR4302535.3744734/94‑1 (MQ=60) GGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGC > SRR4302535.1908276/1‑94 (MQ=60) GTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCTCTCAATTTGTGATGAAAAAGTATTACACAGCG < SRR4302535.2547827/94‑1 (MQ=60) GTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCG < SRR4302535.1666123/94‑1 (MQ=60) TGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGT > SRR4302535.3592776/1‑94 (MQ=60) CCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTT < SRR4302535.4364871/94‑1 (MQ=60) CCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTT > SRR4302535.4670944/1‑94 (MQ=60) AATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCA < SRR4302535.2774728/94‑1 (MQ=60) AATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCA > SRR4302535.596673/1‑94 (MQ=60) AATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCA < SRR4302535.221652/94‑1 (MQ=60) TCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAAC < SRR4302535.243242/94‑1 (MQ=60) CAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACG > SRR4302535.3990833/1‑94 (MQ=60) AGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGT < SRR4302535.106399/94‑1 (MQ=60) AGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGT < SRR4302535.635537/94‑1 (MQ=60) CGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGG < SRR4302535.997822/94‑1 (MQ=60) GCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGC > SRR4302535.2137014/1‑94 (MQ=60) AAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTT < SRR4302535.2620935/94‑1 (MQ=60) AAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTT < SRR4302535.1022822/94‑1 (MQ=60) AAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTT > SRR4302535.2286474/1‑94 (MQ=60) AAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTT < SRR4302535.2190866/94‑1 (MQ=60) AGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTG > SRR4302535.1830251/1‑94 (MQ=60) AGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTG > SRR4302535.2404473/1‑94 (MQ=60) AGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTG < SRR4302535.2082594/94‑1 (MQ=60) GCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCG < SRR4302535.1857926/94‑1 (MQ=60) GCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCG < SRR4302535.1493731/94‑1 (MQ=60) GCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCG < SRR4302535.3236792/94‑1 (MQ=60) GCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGA > SRR4302535.4527346/1‑94 (MQ=60) CTTTTGNCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGAC < SRR4302535.4112810/94‑1 (MQ=60) CTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGAC > SRR4302535.853945/1‑94 (MQ=60) CTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGAC < SRR4302535.3617360/94‑1 (MQ=60) TTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACG < SRR4302535.2066254/94‑1 (MQ=60) TTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACG < SRR4302535.3617731/94‑1 (MQ=60) TTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACG > SRR4302535.1536161/1‑94 (MQ=60) TTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCG < SRR4302535.4589290/94‑1 (MQ=60) TGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGC < SRR4302535.2767301/94‑1 (MQ=60) GGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCA < SRR4302535.4591420/94‑1 (MQ=60) GCTTTG‑CCTTTGCGGTCAGTGCGCAGTTTATGCCACTCAATTTGTGATAAAAAAGTATTACACAGCGTTTCAACGGGGCTTGCCGGACGCGCAT < SRR4302535.2804052/94‑1 (MQ=60) GCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCAT < SRR4302535.1658827/94‑1 (MQ=60) GCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCAT < SRR4302535.2033843/94‑1 (MQ=60) CGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCATG < SRR4302535.2145043/94‑1 (MQ=60) CGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCATG < SRR4302535.2863382/94‑1 (MQ=60) CGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCATG < SRR4302535.1202665/94‑1 (MQ=60) CGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCATG > SRR4302535.646922/1‑94 (MQ=60) GTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAACAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCATGT < SRR4302535.3326651/94‑1 (MQ=60) TTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCATGTA < SRR4302535.2462598/94‑1 (MQ=60) TTGCCC‑TTACGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCATGTA < SRR4302535.3809852/94‑1 (MQ=60) tgcCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCATGTAC < SRR4302535.2387555/91‑1 (MQ=60) tgcCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCATGTAC < SRR4302535.2259452/91‑1 (MQ=60) gcCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCATGTACG > SRR4302535.1274859/3‑94 (MQ=60) gcCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCATGTACG < SRR4302535.2830360/92‑1 (MQ=60) gcCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCATGTACG < SRR4302535.1926966/92‑1 (MQ=60) C‑CC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCATGTACGC > SRR4302535.4528319/1‑94 (MQ=60) | CTTCCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTG‑CC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCATGTACGC > NC_000913/4139576‑4139760 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |