Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,149,200 |
G→A |
A493V (GCG→GTG) |
ppc ← |
phosphoenolpyruvate carboxylase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,149,200 | 0 | G | A | 99.6%
| 769.5
/ NA
| 229 | A493V (GCG→GTG) | ppc | phosphoenolpyruvate carboxylase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (103/125); minor base C (1/0); total (104/125) |
| Fisher's exact test for biased strand distribution p-value = 4.54e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 |
Only 100 of 232 total aligned reads displayed.
TTGAGCAGCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCGCTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTGCT > NC_000913/4149110‑4149289
|
ttGAGCAGCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCAct < 1:2552649/93‑1 (MQ=255)
gAGCAGCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCActtc < 1:52273/93‑1 (MQ=255)
gAGCAGCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCActtc < 2:247910/93‑1 (MQ=255)
gAGCAGCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGGTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCActtc > 2:2417690/1‑93 (MQ=255)
agcTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGGTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTc > 2:4432325/1‑93 (MQ=255)
gggTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCATTTCTTTcagca > 1:2566836/1‑93 (MQ=255)
gggTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTTTTTcagca < 2:4583098/93‑1 (MQ=255)
gggTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTcagca > 1:1262427/1‑93 (MQ=255)
ggTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTcagcag > 1:3315705/1‑93 (MQ=255)
gTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTcagcagc < 2:1983812/93‑1 (MQ=255)
tCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTcagcagca < 1:1792958/93‑1 (MQ=255)
taTGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGTCATCGCAAACCCGATACCCACTTCTTTcagcagcag < 2:4068430/92‑1 (MQ=255)
cATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAACCCCGATACCCACTTCTTTcagcagcag < 1:4034480/93‑1 (MQ=255)
cATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTcagcagcag < 1:3521724/93‑1 (MQ=255)
cATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTcagcagcag > 2:2685835/1‑93 (MQ=255)
cATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTcagcagcag < 1:2858643/93‑1 (MQ=255)
aTGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAgg < 1:4091253/93‑1 (MQ=255)
aTGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAgg < 2:1273673/93‑1 (MQ=255)
aTGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAgg > 1:896753/1‑93 (MQ=255)
aTGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAgg > 2:2962305/1‑93 (MQ=255)
aTGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAgg > 2:3410757/1‑93 (MQ=255)
tGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGt < 2:2246574/93‑1 (MQ=255)
tGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCCGAGCAACGGACATGGCAAACCCGATACCCACTTCGTTCAGGAGCAGGt > 1:2703069/1‑93 (MQ=255)
gACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTg < 1:2428970/93‑1 (MQ=255)
aCATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTgg > 1:1394639/1‑93 (MQ=255)
aCATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTgg > 2:1699272/1‑93 (MQ=255)
cATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGa > 2:1017280/1‑93 (MQ=255)
cATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGa < 1:1173597/93‑1 (MQ=255)
tCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAGCAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACa < 2:1089440/93‑1 (MQ=255)
tCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACa > 2:2330879/1‑93 (MQ=255)
tCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACa > 1:2021700/1‑93 (MQ=255)
cGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAg < 2:2277770/93‑1 (MQ=255)
ttGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGcc > 1:2546705/1‑93 (MQ=255)
tGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCa < 1:3685489/93‑1 (MQ=255)
ggCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAg < 2:1712715/93‑1 (MQ=255)
gCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGt > 1:2052273/1‑93 (MQ=255)
ggttgttCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTa < 1:3782167/92‑1 (MQ=255)
ttgttCAGATCATCGAGGGTTTCAAGCAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACg > 2:3038577/1‑93 (MQ=255)
ttgttCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACg > 1:3924305/1‑93 (MQ=255)
tgttCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGt < 1:4645879/93‑1 (MQ=255)
gttCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATCCCCACTTCTTCCAGCAGCAGGTGGACAGCCAGTACGTc < 2:2763078/93‑1 (MQ=255)
gttCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTc > 2:1393493/1‑93 (MQ=255)
cAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGa < 1:2870595/93‑1 (MQ=255)
cAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGa < 2:88736/93‑1 (MQ=255)
aGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGAc < 1:1147468/93‑1 (MQ=255)
aGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGAc < 2:2740301/93‑1 (MQ=255)
atcatcGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACgg > 1:2438763/1‑93 (MQ=255)
tcatcGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATCCCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGc < 1:2766708/93‑1 (MQ=255)
tcatcGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGc < 1:668958/93‑1 (MQ=255)
tcatcGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGc < 1:4229946/93‑1 (MQ=255)
tcatcGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGc < 1:2544825/93‑1 (MQ=255)
atcGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCgc > 1:3416028/1‑92 (MQ=255)
cGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGttt > 2:1184878/1‑93 (MQ=255)
gAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGtttt > 1:4174282/1‑93 (MQ=255)
gAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGtttt > 1:3946864/1‑93 (MQ=255)
gAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGtttt < 2:3746161/93‑1 (MQ=255)
aGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTc > 1:315929/1‑93 (MQ=255)
ggTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGc > 1:840553/1‑93 (MQ=255)
tttCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCa > 2:1534190/1‑93 (MQ=255)
tCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCTAGTACGTCGGACGGCGTTTTCGCCATc < 2:492646/93‑1 (MQ=255)
aaaCAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCga > 2:3320815/1‑93 (MQ=255)
aCAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCgaga > 1:2126487/1‑93 (MQ=255)
cAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGAt > 1:348813/1‑93 (MQ=255)
aGCGGAGCACCCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATc < 1:18922/93‑1 (MQ=255)
aGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATc < 2:1794459/93‑1 (MQ=255)
aGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATc < 2:2894381/93‑1 (MQ=255)
gCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCa < 1:2992495/93‑1 (MQ=255)
gCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCa > 2:556792/1‑93 (MQ=255)
cGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCAc < 2:699499/93‑1 (MQ=255)
gAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGt > 2:3179163/1‑93 (MQ=255)
gAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGt > 1:3208522/1‑93 (MQ=255)
ggCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTa < 2:1664127/92‑1 (MQ=255)
aGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTa < 2:3346338/93‑1 (MQ=255)
aGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTa < 2:1743214/93‑1 (MQ=255)
aGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTa < 1:3573053/93‑1 (MQ=255)
cAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAgg < 1:1911468/93‑1 (MQ=255)
aaCCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAggc > 2:3714278/1‑93 (MQ=255)
aaCCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAggc < 2:4238951/93‑1 (MQ=255)
ggCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCa > 2:637076/1‑93 (MQ=255)
ggCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCa < 2:2004665/93‑1 (MQ=255)
cATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAAt < 2:4222736/93‑1 (MQ=255)
cATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAAt < 2:767729/93‑1 (MQ=255)
cATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAAt < 1:775031/93‑1 (MQ=255)
aTCGCAAGCCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATg < 1:1022884/93‑1 (MQ=255)
tCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATgg > 1:975972/1‑93 (MQ=255)
gCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAg < 2:3388453/93‑1 (MQ=255)
gCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAg < 2:2584215/93‑1 (MQ=255)
aaCCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCt > 2:3576815/1‑93 (MQ=255)
aaCCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCt < 1:615216/93‑1 (MQ=255)
aaCCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCt < 1:4466389/93‑1 (MQ=255)
aCCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCtt > 1:1488206/1‑93 (MQ=255)
aCCCGATACCCACTTCTTCCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCtt > 1:3066476/1‑93 (MQ=255)
cccGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTg < 1:2913622/93‑1 (MQ=255)
ccGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGc > 2:4668010/1‑93 (MQ=255)
cGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCg > 2:306370/1‑93 (MQ=255)
aTACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCggg > 1:1522057/1‑92 (MQ=255)
aTACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCggg > 1:4371550/1‑92 (MQ=255)
aCCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTGc < 2:1330573/93‑1 (MQ=255)
cccACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTGCt < 2:1896338/93‑1 (MQ=255)
cccACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTGCt > 2:3852224/1‑93 (MQ=255)
|
TTGAGCAGCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCGCTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTGCT > NC_000913/4149110‑4149289
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TATTGAGCAGCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCGCTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTGCTTCGG > NC_000913/4149108‑4149293
|
TATTGAGCAGCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCAC > SRR4302535.4072086/1‑94 (MQ=60)
TATTGAGCAGCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCAC < SRR4302535.1468713/94‑1 (MQ=60)
ATTGAGCAGCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACT > SRR4302535.2891402/1‑94 (MQ=60)
ATTGAGCAGCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACT > SRR4302535.256246/1‑94 (MQ=60)
TTGAGCAGCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTT < SRR4302535.2571028/94‑1 (MQ=60)
GAGCAGCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCT < SRR4302535.52654/94‑1 (MQ=60)
GCAGCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTT < SRR4302535.2358191/94‑1 (MQ=60)
AGCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAAACCGATACCCACTTCTTTCA > SRR4302535.3557262/1‑94 (MQ=60)
GCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAG < SRR4302535.3472264/94‑1 (MQ=60)
GCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAG < SRR4302535.2879315/94‑1 (MQ=60)
CTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGC > SRR4302535.888519/1‑94 (MQ=60)
CTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGC < SRR4302535.3644584/94‑1 (MQ=60)
CTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGA > SRR4302535.1525782/1‑94 (MQ=60)
TGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCATTTCTTTCAGCA > SRR4302535.2585302/1‑94 (MQ=60)
TGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCA > SRR4302535.1271461/1‑94 (MQ=60)
GGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAG < SRR4302535.492239/94‑1 (MQ=60)
GGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAG > SRR4302535.3338775/1‑94 (MQ=60)
GGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAG < SRR4302535.245299/94‑1 (MQ=60)
TCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAG > SRR4302535.2958729/1‑94 (MQ=60)
TCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAG < SRR4302535.1805921/94‑1 (MQ=60)
CATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAACCCCGATACCCACTTCTTTCAGCAGCAGG < SRR4302535.4062100/94‑1 (MQ=60)
CATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGG < SRR4302535.2878895/94‑1 (MQ=60)
CATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGG < SRR4302535.3546183/94‑1 (MQ=60)
CATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGG < SRR4302535.1916291/94‑1 (MQ=60)
CATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGG > SRR4302535.2767836/1‑94 (MQ=60)
CATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGG > SRR4302535.903112/1‑94 (MQ=60)
ATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGT > SRR4302535.2610151/1‑94 (MQ=60)
ATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGT > SRR4302535.1600209/1‑94 (MQ=60)
ATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGT < SRR4302535.4119247/94‑1 (MQ=60)
ATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCCGAGCAACGGACATGGCAAACCCGATACCCACTTCGTTCAGGAGCAGGT > SRR4302535.2722381/1‑94 (MQ=60)
GACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGG < SRR4302535.2446472/94‑1 (MQ=60)
GACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGG > SRR4302535.1404599/1‑94 (MQ=60)
GACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGG < SRR4302535.2045738/94‑1 (MQ=60)
CATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGAC < SRR4302535.1181974/94‑1 (MQ=60)
CATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGAC > SRR4302535.2575747/1‑94 (MQ=60)
CATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGAC > SRR4302535.2658526/1‑94 (MQ=60)
ATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACA > SRR4302535.4496324/1‑94 (MQ=60)
ATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACA > SRR4302535.2036274/1‑94 (MQ=60)
ATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGGGGACA > SRR4302535.3564331/1‑94 (MQ=60)
TCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAG < SRR4302535.3055697/94‑1 (MQ=60)
GTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCC > SRR4302535.2565030/1‑94 (MQ=60)
GTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCC > SRR4302535.2565031/1‑94 (MQ=60)
GTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCC > SRR4302535.503706/1‑94 (MQ=60)
TGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAG < SRR4302535.944706/94‑1 (MQ=60)
TGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAG < SRR4302535.3710987/94‑1 (MQ=60)
GGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGT > SRR4302535.2067049/1‑94 (MQ=60)
GGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTAC < SRR4302535.3808263/94‑1 (MQ=60)
CGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTAC < SRR4302535.1202425/94‑1 (MQ=60)
CGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTAC > SRR4302535.136815/1‑94 (MQ=60)
CGTTGTTCAGATCATCGAGGGGTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTAC > SRR4302535.1934834/1‑94 (MQ=60)
GTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACG > SRR4302535.3405554/1‑94 (MQ=60)
GTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACG > SRR4302535.3951122/1‑94 (MQ=60)
GTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACG > SRR4302535.3951121/1‑94 (MQ=60)
TTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGT > SRR4302535.2080471/1‑94 (MQ=60)
TGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTC < SRR4302535.4677359/94‑1 (MQ=60)
TGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTC > SRR4302535.2879838/1‑94 (MQ=60)
TGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTC < SRR4302535.1870323/94‑1 (MQ=60)
GTTCAGATCATGGAGGGTTTCAAACGGCGGAGCACCCGGCATCGCAAGCCCGATACCCCCTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCG < SRR4302535.595561/94‑1 (MQ=60)
TCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGA < SRR4302535.61754/94‑1 (MQ=60)
CAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGAC > SRR4302535.1310591/1‑94 (MQ=60)
CAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGAC < SRR4302535.2890934/94‑1 (MQ=60)
AGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACG < SRR4302535.1155646/94‑1 (MQ=60)
AGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACG > SRR4302535.4251628/1‑94 (MQ=60)
AGAGCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACG < SRR4302535.38059/94‑1 (MQ=60)
GATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGG > SRR4302535.2456332/1‑94 (MQ=60)
GATCATCGAGGGTTTCAAACAGCGGAGAAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGG > SRR4302535.792371/1‑94 (MQ=60)
ATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGC > SRR4302535.3141250/1‑94 (MQ=60)
TCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATCCCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCG < SRR4302535.2786411/94‑1 (MQ=60)
TCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCG < SRR4302535.4258894/94‑1 (MQ=60)
TCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCG > SRR4302535.410966/1‑94 (MQ=60)
TCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCG < SRR4302535.2563146/94‑1 (MQ=60)
TCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCG < SRR4302535.673622/94‑1 (MQ=60)
CATCGAGGGTTTCAAACAGCGGAGGAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGT > SRR4302535.2467553/1‑94 (MQ=60)
CATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGC > SRR4302535.3439790/1‑94 (MQ=60)
ATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTT < SRR4302535.395687/94‑1 (MQ=60)
CGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTT > SRR4302535.4202853/1‑94 (MQ=60)
CGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTT > SRR4302535.3973814/1‑94 (MQ=60)
GAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTC < SRR4302535.663440/94‑1 (MQ=60)
GAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTC > SRR4302535.318119/1‑94 (MQ=60)
GAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTC > SRR4302535.219188/1‑94 (MQ=60)
GAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTC > SRR4302535.3979664/1‑94 (MQ=60)
GGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGC > SRR4302535.846455/1‑94 (MQ=60)
TTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATC < SRR4302535.968579/94‑1 (MQ=60)
TCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCG < SRR4302535.3920122/94‑1 (MQ=60)
CAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGA < SRR4302535.1136957/94‑1 (MQ=60)
AAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAG < SRR4302535.1703524/94‑1 (MQ=60)
AACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGA > SRR4302535.2141817/1‑94 (MQ=60)
ACAGCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGAT > SRR4302535.351214/1‑94 (MQ=60)
AGCGGAGCACCCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCA < SRR4302535.19062/94‑1 (MQ=60)
GCGGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCAC < SRR4302535.3013478/94‑1 (MQ=60)
GGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGT > SRR4302535.3230745/1‑94 (MQ=60)
GGAGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCG‑CATCGAGATCACGTA < SRR4302535.4367101/94‑1 (MQ=60)
AGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAG < SRR4302535.3597830/94‑1 (MQ=60)
AGCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAG < SRR4302535.1993289/94‑1 (MQ=60)
GCAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGG < SRR4302535.1180536/94‑1 (MQ=60)
CAACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGC < SRR4302535.1925243/94‑1 (MQ=60)
AACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCG < SRR4302535.1421284/94‑1 (MQ=60)
AACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCG < SRR4302535.2565299/94‑1 (MQ=60)
ACCGGCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGG > SRR4302535.677655/1‑94 (MQ=60)
GTCATCGAAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAA < SRR4302535.4183125/94‑1 (MQ=60)
GCATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAAT < SRR4302535.33056/94‑1 (MQ=60)
CATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATG < SRR4302535.780480/94‑1 (MQ=60)
ATCGCAAGCCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGG < SRR4302535.1030149/94‑1 (MQ=60)
ATCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGG > SRR4302535.982900/1‑94 (MQ=60)
TCGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGA < SRR4302535.4508139/94‑1 (MQ=60)
CGCAACCCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAG < SRR4302535.3534822/94‑1 (MQ=60)
CGCAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAG < SRR4302535.996569/94‑1 (MQ=60)
CAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCC < SRR4302535.779774/94‑1 (MQ=60)
CAAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCC > SRR4302535.4109119/1‑94 (MQ=60)
AAACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCT > SRR4302535.3229753/1‑94 (MQ=60)
AACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTT > SRR4302535.1498875/1‑94 (MQ=60)
AACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTT < SRR4302535.619496/94‑1 (MQ=60)
AACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTT < SRR4302535.3418381/94‑1 (MQ=60)
AACCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTT < SRR4302535.4497029/94‑1 (MQ=60)
AACCCGATACCCACTTCTTCCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTT > SRR4302535.3087904/1‑94 (MQ=60)
CCCGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGC < SRR4302535.2934202/94‑1 (MQ=60)
CGATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGG > SRR4302535.4347227/1‑94 (MQ=60)
GATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGTCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGT < SRR4302535.3062329/94‑1 (MQ=60)
GATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGG > SRR4302535.4401464/1‑94 (MQ=60)
GATACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGG > SRR4302535.1533020/1‑94 (MQ=60)
ACCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTGCT < SRR4302535.2868456/94‑1 (MQ=60)
CCCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTGCTT > SRR4302535.531358/1‑94 (MQ=60)
CCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTGCTTC > SRR4302535.3269194/1‑94 (MQ=60)
CCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTGCTTC < SRR4302535.194014/94‑1 (MQ=60)
CCACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGACTTGCGGTGCTTC > SRR4302535.3188379/1‑94 (MQ=60)
CACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTGCTTCG > SRR4302535.4346170/1‑94 (MQ=60)
CACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTGCTTCG < SRR4302535.299084/94‑1 (MQ=60)
CACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGATTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTGCTTCG > SRR4302535.3456585/1‑94 (MQ=60)
ACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTGCTTCGG > SRR4302535.1187629/1‑94 (MQ=60)
ACTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTGCTTCGG > SRR4302535.444459/1‑94 (MQ=60)
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TATTGAGCAGCTGGGTCATGACATCGTTGGCGTTGTTCAGATCATCGAGGGTTTCAAACAGCGGAGCAACCGGCATCGCAAACCCGATACCCGCTTCTTTCAGCAGCAGGTGGACAGCCAGTACGTCGGACGGCGTTTTCGCCATCGAGATCACGTAGGCGGCAATGGAGCCTTGCGGTGCTTCGG > NC_000913/4149108‑4149293
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
