Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,599,102	T→C	H55R (CAT→CGT)	ydeW ←	putative transcriptional regulator, sorC family

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,599,102	0	T	C	100.0%	1040.8 / NA	318	H55R (CAT→CGT)	ydeW	putative transcriptional regulator, sorC family
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (202/116); total (202/116)

Only 100 of 322 total aligned reads displayed.

TGCAGCGAAAACTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGATGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGATAGTAA  >  NC_000913/1599012‑1599191

 gCAGCGAAAACTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGcc                                                                                        <  1:6373624/93‑1 (MQ=255)

  cAGCGAAAACTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGccc                                                                                       >  2:3737670/1‑93 (MQ=255)

    gCGAAAACTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCtt                                                                                     <  2:4013805/93‑1 (MQ=255)

    gCGAAAACTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCtt                                                                                     >  2:3631532/1‑93 (MQ=255)

      gAAAACTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTtc                                                                                   <  1:7911446/93‑1 (MQ=255)

       gaaaCTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTtct                                                                                  >  2:1360825/2‑93 (MQ=255)

       aaaaCTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTtct                                                                                  >  1:10044409/1‑93 (MQ=255)

       aaaaCTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTtct                                                                                  >  1:3880016/1‑93 (MQ=255)

        aaaCTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTtctc                                                                                 <  1:3567579/93‑1 (MQ=255)

         aaCTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTcc                                                                                >  1:4128566/1‑93 (MQ=255)

            tGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGc                                                                             <  1:8774221/93‑1 (MQ=255)

            tGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGc                                                                             <  2:6183489/93‑1 (MQ=255)

             gacgacGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCa                                                                            <  1:2724496/93‑1 (MQ=255)

             gacgacGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCa                                                                            >  1:407894/1‑93 (MQ=255)

               cgacgTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAAt                                                                          >  1:9532046/1‑93 (MQ=255)

                gacgTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATc                                                                         >  2:250236/1‑93 (MQ=255)

                 acgTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATcg                                                                        >  2:2427918/1‑93 (MQ=255)

                  cgTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATcgc                                                                       >  1:1284688/1‑93 (MQ=255)

                    tAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGa                                                                     >  2:1153102/1‑93 (MQ=255)

                     aaTTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGac                                                                    >  1:744007/1‑93 (MQ=255)

                      aTTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGaca                                                                   >  1:9371825/1‑93 (MQ=255)

                      aTTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGaca                                                                   >  1:8816412/1‑93 (MQ=255)

                       ttGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGacac                                                                  >  2:7916838/1‑93 (MQ=255)

                       ttGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGacac                                                                  >  1:1897146/1‑93 (MQ=255)

                       ttGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGacac                                                                  >  2:5210963/1‑93 (MQ=255)

                        tGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACt                                                                 >  2:339116/1‑93 (MQ=255)

                        tGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACt                                                                 >  1:7567956/1‑93 (MQ=255)

                        tGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACt                                                                 <  2:4707909/93‑1 (MQ=255)

                        tGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACt                                                                 >  1:1541801/1‑93 (MQ=255)

                           gTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTc                                                              <  1:1672194/93‑1 (MQ=255)

                            tttCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCa                                                             >  1:9076754/1‑93 (MQ=255)

                             ttCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCaa                                                            <  1:995169/93‑1 (MQ=255)

                              tCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCaaa                                                           <  1:9625416/93‑1 (MQ=255)

                                atatTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACg                                                         <  1:2344323/93‑1 (MQ=255)

                                atatTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACg                                                         >  2:5578892/1‑93 (MQ=255)

                                 tatTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACgt                                                        >  2:8439848/1‑93 (MQ=255)

                                 tatTCCAGACACCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCGGGACTGACGCCCTTCCTCCAGCAATCGCGCCACTTTCAACCgt                                                        >  1:8647410/1‑93 (MQ=255)

                                  atTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACgtg                                                       <  2:1278035/93‑1 (MQ=255)

                                   ttCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACgtgt                                                      >  2:2235119/1‑93 (MQ=255)

                                   ttCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACgtgt                                                      <  2:4073374/93‑1 (MQ=255)

                                   ttCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACgtgt                                                      >  2:5306889/1‑93 (MQ=255)

                                   ttCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACgtgt                                                      <  1:8280611/93‑1 (MQ=255)

                                    tCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTc                                                     >  1:2480277/1‑93 (MQ=255)

                                    tCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTc                                                     <  1:794015/93‑1 (MQ=255)

                                     tcAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCa                                                    <  1:3425541/92‑1 (MQ=255)

                                     ccAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCa                                                    <  1:616291/93‑1 (MQ=255)

                                     ccAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCa                                                    <  2:6668989/93‑1 (MQ=255)

                                     ccAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCa                                                    >  2:8915604/1‑93 (MQ=255)

                                     ccAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCa                                                    >  2:1047127/1‑93 (MQ=255)

                                      cAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAg                                                   <  1:6991141/93‑1 (MQ=255)

                                       aGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAgg                                                  >  1:3764621/1‑93 (MQ=255)

                                       aGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAgg                                                  >  2:3238226/1‑93 (MQ=255)

                                          cAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCg                                               >  2:4616902/1‑93 (MQ=255)

                                          cAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCg                                               >  2:7392819/1‑93 (MQ=255)

                                           aGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCga                                              >  2:4826053/1‑93 (MQ=255)

                                           aGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCga                                              >  1:5261865/1‑93 (MQ=255)

                                           aGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCga                                              >  2:9153682/1‑93 (MQ=255)

                                            gCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCgag                                             >  1:7318518/1‑93 (MQ=255)

                                              cTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGAc                                           <  1:6810847/93‑1 (MQ=255)

                                              cTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGAc                                           >  1:5861001/1‑93 (MQ=255)

                                               ttCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGGCTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGG‑CGAGACGa                                         >  2:2045709/1‑93 (MQ=255)

                                               ttCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCaaa                                                           <  1:2896129/76‑1 (MQ=255)

                                               ttCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACg                                          >  1:4401511/1‑93 (MQ=255)

                                                tCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGa                                         >  2:3444927/1‑93 (MQ=255)

                                                  aaaGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATc                                       >  2:1585765/1‑93 (MQ=255)

                                                   aaGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCg                                      >  1:9327539/1‑93 (MQ=255)

                                                    aGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGc                                     >  1:1224522/1‑93 (MQ=255)

                                                    aGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGc                                     <  1:3019553/93‑1 (MQ=255)

                                                       gagaATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGa                                  >  1:2292563/1‑93 (MQ=255)

                                                         gaATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGAtc                                <  2:7124945/93‑1 (MQ=255)

                                                          aaTTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGAtct                               >  2:3563672/1‑93 (MQ=255)

                                                          aaTTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGAtct                               >  1:6494340/1‑93 (MQ=255)

                                                          aaTTAATCAGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGAtgt                               >  2:9829468/1‑91 (MQ=255)

                                                           aTTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGAtctc                              <  2:9505363/93‑1 (MQ=255)

                                                            ttAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCg                             >  1:8513552/1‑93 (MQ=255)

                                                               aTCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGctc                          >  1:3390327/1‑93 (MQ=255)

                                                                tCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGctct                         >  2:6467301/1‑93 (MQ=255)

                                                                   gTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTggg                      >  2:5955809/1‑93 (MQ=255)

                                                                    tACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGt                     >  2:171940/1‑93 (MQ=255)

                                                                    tACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGt                     >  2:8319168/1‑93 (MQ=255)

                                                                     aCGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTc                    <  2:266006/93‑1 (MQ=255)

                                                                     aCGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTc                    <  1:4585568/93‑1 (MQ=255)

                                                                        cgAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGc                 >  1:7227454/1‑93 (MQ=255)

                                                                         gAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGcc                >  1:4864360/1‑93 (MQ=255)

                                                                          aataatGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGccc               <  2:8126325/93‑1 (MQ=255)

                                                                          aataatGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGccc               >  2:4562150/1‑93 (MQ=255)

                                                                          aataatGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGccc               >  2:7732261/1‑93 (MQ=255)

                                                                          aataatGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGccc               >  2:949008/1‑93 (MQ=255)

                                                                          aataatGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATAGCTGATCTCTCTCTGGGTCAGccc               >  2:4202209/1‑93 (MQ=255)

                                                                           ataatGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCcg              >  2:6363609/1‑93 (MQ=255)

                                                                           ataatGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCcg              <  2:4603210/93‑1 (MQ=255)

                                                                            taatGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCcgt             <  2:9746738/93‑1 (MQ=255)

                                                                                 ccGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGa        <  1:4827407/93‑1 (MQ=255)

                                                                                   ggACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGATa      <  1:8117054/93‑1 (MQ=255)

                                                                                   ggACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGATa      <  1:2091571/93‑1 (MQ=255)

                                                                                   ggACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGATa      >  2:2777996/1‑93 (MQ=255)

                                                                                    gACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGATAg     >  1:3150073/1‑93 (MQ=255)

                                                                                    gACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGATAg     >  1:5305942/1‑93 (MQ=255)

                                                                                     aCTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGATAGt    >  2:8724342/1‑93 (MQ=255)

                                                                                      cTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGATAGTa   <  2:245841/93‑1 (MQ=255)

TGCAGCGAAAACTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGATGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGATAGTAA  >  NC_000913/1599012‑1599191

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGTTGCAGCGAAAACTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGATGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGATAGTAAAACC  >  NC_000913/1599009‑1599195

TGTTGCAGCGAAAACTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGAC                                                                                               <  SRR4302540.914000/94‑1 (MQ=60)

TGTTGCAGCGAAAACTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGAC                                                                                               >  SRR4302540.1810746/1‑94 (MQ=60)

TGTTGCAGCGAAAACTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGAC                                                                                               >  SRR4302540.8174421/1‑94 (MQ=60)

TGTTGCAGCGAAAACTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGAC                                                                                               >  SRR4302540.8918683/1‑94 (MQ=60)

  TTGCAGCGAAAACTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGC                                                                                             <  SRR4302540.4164400/94‑1 (MQ=60)

   TGCAGCGAAAACTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCC                                                                                            >  SRR4302540.7230127/1‑94 (MQ=60)

    GCAGCGAAAACTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCC                                                                                           <  SRR4302540.6444586/94‑1 (MQ=60)

     CAGCGAAAACTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCT                                                                                          >  SRR4302540.1053218/1‑94 (MQ=60)

     CAGCGAAAACTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCT                                                                                          <  SRR4302540.5339898/94‑1 (MQ=60)

     CAGCGAAAACTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCT                                                                                          >  SRR4302540.1728841/1‑94 (MQ=60)

      AGCGAAAACTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTT                                                                                         >  SRR4302540.8705462/1‑94 (MQ=60)

       GCGAAAACTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTT                                                                                        <  SRR4302540.4320932/94‑1 (MQ=60)

       GCGAAAACTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTT                                                                                        >  SRR4302540.3814783/1‑94 (MQ=60)

         GAAAACTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCT                                                                                      <  SRR4302540.8003693/94‑1 (MQ=60)

         GAAAACTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCT                                                                                      <  SRR4302540.4880446/94‑1 (MQ=60)

         GAAAACTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCT                                                                                      >  SRR4302540.3922176/1‑94 (MQ=60)

         GAAAACTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCT                                                                                      <  SRR4302540.2971337/94‑1 (MQ=60)

         GAAAACTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCT                                                                                      >  SRR4302540.10089333/1‑94 (MQ=60)

         GAAAACTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCT                                                                                      >  SRR4302540.10161181/1‑94 (MQ=60)

          AAAACTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTC                                                                                     >  SRR4302540.8793893/1‑94 (MQ=60)

          AAAACTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTC                                                                                     >  SRR4302540.7052734/1‑94 (MQ=60)

           AAACTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCC                                                                                    >  SRR4302540.5928903/1‑94 (MQ=60)

           AAACTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCC                                                                                    >  SRR4302540.4173188/1‑94 (MQ=60)

           AAACTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCC                                                                                    <  SRR4302540.3606547/94‑1 (MQ=60)

            AACTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCA                                                                                   >  SRR4302540.3255623/1‑94 (MQ=60)

            AACTCACGACGTAATTGCGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCA                                                                                   <  SRR4302540.2981884/94‑1 (MQ=60)

               TGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCA                                                                                >  SRR4302540.412160/1‑94 (MQ=60)

               TGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCA                                                                                <  SRR4302540.8875868/94‑1 (MQ=60)

                GACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAA                                                                               <  SRR4302540.2753877/94‑1 (MQ=60)

                 ACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAAT                                                                              >  SRR4302540.9644887/1‑94 (MQ=60)

                  CGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATC                                                                             <  SRR4302540.745166/94‑1 (MQ=60)

                  CGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATC                                                                             >  SRR4302540.3094618/1‑94 (MQ=60)

                   GACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCG                                                                            >  SRR4302540.3932415/1‑94 (MQ=60)

                   GACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCG                                                                            >  SRR4302540.1589367/1‑94 (MQ=60)

                   GACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCG                                                                            >  SRR4302540.1167335/1‑94 (MQ=60)

                    ACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGC                                                                           <  SRR4302540.8205526/94‑1 (MQ=60)

                    ACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGC                                                                           >  SRR4302540.1297929/1‑94 (MQ=60)

                      GTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGA                                                                         >  SRR4302540.818126/1‑94 (MQ=60)

                      GTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGA                                                                         <  SRR4302540.8232291/94‑1 (MQ=60)

                      GTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGA                                                                         >  SRR4302540.8490712/1‑94 (MQ=60)

                      GTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGA                                                                         >  SRR4302540.1310209/1‑94 (MQ=60)

                       TAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGAC                                                                        >  SRR4302540.751938/1‑94 (MQ=60)

                       TAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGAC                                                                        >  SRR4302540.9416013/1‑94 (MQ=60)

                        AATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACA                                                                       >  SRR4302540.8918348/1‑94 (MQ=60)

                        AATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACA                                                                       >  SRR4302540.76975/1‑94 (MQ=60)

                        AATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACA                                                                       >  SRR4302540.9483404/1‑94 (MQ=60)

                        AATTGAGTATCATATTCCAGACAGCCTTCAAAGCTAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACA                                                                       <  SRR4302540.4077415/94‑1 (MQ=60)

                         ATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACAC                                                                      >  SRR4302540.7480467/1‑94 (MQ=60)

                         ATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACAC                                                                      >  SRR4302540.1959576/1‑94 (MQ=60)

                         ATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACAC                                                                      >  SRR4302540.1917903/1‑94 (MQ=60)

                          TTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACT                                                                     <  SRR4302540.1925089/94‑1 (MQ=60)

                          TTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACT                                                                     <  SRR4302540.6347905/94‑1 (MQ=60)

                          TTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACT                                                                     >  SRR4302540.1558834/1‑94 (MQ=60)

                          TTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACT                                                                     >  SRR4302540.7652857/1‑94 (MQ=60)

                           TGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTT                                                                    >  SRR4302540.7557209/1‑94 (MQ=60)

                              GTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCA                                                                 >  SRR4302540.9185777/1‑94 (MQ=60)

                              GTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCA                                                                 <  SRR4302540.1690373/94‑1 (MQ=60)

                              GTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCA                                                                 >  SRR4302540.2646896/1‑94 (MQ=60)

                                TTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAA                                                               >  SRR4302540.4635658/1‑94 (MQ=60)

                                TTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAA                                                               <  SRR4302540.1005302/94‑1 (MQ=60)

                                TTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAA                                                               >  SRR4302540.9519616/1‑94 (MQ=60)

                                 ttccgatctagcgcttCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAAC                                                              <  SRR4302540.2927710/78‑1 (MQ=60)

                                 TCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAGTCGCGACACTTTCAAAG                                                              >  SRR4302540.2294538/1‑94 (MQ=60)

                                 TCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAAC                                                              <  SRR4302540.6730149/94‑1 (MQ=60)

                                 TCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAAC                                                              <  SRR4302540.9738852/94‑1 (MQ=60)

                                  CATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACG                                                             <  SRR4302540.4769782/94‑1 (MQ=60)

                                  CATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACG                                                             >  SRR4302540.7329689/1‑94 (MQ=60)

                                   ATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGT                                                            >  SRR4302540.7782433/1‑94 (MQ=60)

                                   ATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGT                                                            <  SRR4302540.2369578/94‑1 (MQ=60)

                                   ATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGT                                                            >  SRR4302540.3519210/1‑94 (MQ=60)

                                   ATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGT                                                            >  SRR4302540.8747867/1‑94 (MQ=60)

                                   ATATTCCAGACACCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCGGGACTGACGCCCTTCCTCCAGCAATCGCGCCACTTTCAACCGT                                                            >  SRR4302540.8747866/1‑94 (MQ=60)

                                    TATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTG                                                           <  SRR4302540.8538254/94‑1 (MQ=60)

                                     ATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGT                                                          >  SRR4302540.3816924/1‑94 (MQ=60)

                                     ATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGT                                                          >  SRR4302540.9326572/1‑94 (MQ=60)

                                      TTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTC                                                         <  SRR4302540.4127927/94‑1 (MQ=60)

                                      TTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTC                                                         >  SRR4302540.2506995/1‑94 (MQ=60)

                                      TTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTC                                                         <  SRR4302540.8376783/94‑1 (MQ=60)

                                       TCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCA                                                        <  SRR4302540.802448/94‑1 (MQ=60)

                                       TCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCA                                                        <  SRR4302540.665879/94‑1 (MQ=60)

                                        TCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAG                                                       <  SRR4302540.3462778/94‑1 (MQ=60)

                                        CCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAG                                                       <  SRR4302540.6952577/94‑1 (MQ=60)

                                        CCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAG                                                       <  SRR4302540.622864/94‑1 (MQ=60)

                                        CCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAG                                                       <  SRR4302540.3462727/94‑1 (MQ=60)

                                         CAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGG                                                      <  SRR4302540.7068744/94‑1 (MQ=60)

                                         CAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGG                                                      >  SRR4302540.9683024/1‑94 (MQ=60)

                                         CAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGG                                                      >  SRR4302540.3805693/1‑94 (MQ=60)

                                         CAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGG                                                      <  SRR4302540.3087571/94‑1 (MQ=60)

                                         CAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGG                                                      <  SRR4302540.8027336/94‑1 (MQ=60)

                                         CAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGG                                                      >  SRR4302540.8032114/1‑94 (MQ=60)

                                         CAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGG                                                      <  SRR4302540.830582/94‑1 (MQ=60)

                                          AGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGC                                                     >  SRR4302540.2707296/1‑94 (MQ=60)

                                          AGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGC                                                     >  SRR4302540.8450133/1‑94 (MQ=60)

                                           agCAGCCTTCAAAGCGAGAATTAATCTGTACGCCAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCC                                                    <  SRR4302540.3319032/92‑1 (MQ=60)

                                             CAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGA                                                  >  SRR4302540.5319272/1‑94 (MQ=60)

                                              AGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAG                                                 >  SRR4302540.7400259/1‑94 (MQ=60)

                                              AGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAG                                                 <  SRR4302540.9023126/94‑1 (MQ=60)

                                              AGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAG                                                 >  SRR4302540.2867549/1‑94 (MQ=60)

                                                CCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGAC                                               >  SRR4302540.5925812/1‑94 (MQ=60)

                                                 CTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACG                                              >  SRR4302540.2245309/1‑94 (MQ=60)

                                                 CTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACG                                              >  SRR4302540.4449242/1‑94 (MQ=60)

                                                 CTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACG                                              >  SRR4302540.3965692/1‑94 (MQ=60)

                                                 CTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACG                                              <  SRR4302540.6886209/94‑1 (MQ=60)

                                                  TTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGA                                             >  SRR4302540.4141480/1‑94 (MQ=60)

                                                  TTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGA                                             >  SRR4302540.2368924/1‑94 (MQ=60)

                                                     AAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCG                                          >  SRR4302540.899526/1‑94 (MQ=60)

                                                     AAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCG                                          >  SRR4302540.9438778/1‑94 (MQ=60)

                                                     AAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATAG                                          >  SRR4302540.8889440/1‑94 (MQ=60)

                                                      AAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGC                                         >  SRR4302540.1237046/1‑94 (MQ=60)

                                                       AGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCT                                        <  SRR4302540.3052741/94‑1 (MQ=60)

                                                       AGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCT                                        >  SRR4302540.1598362/1‑94 (MQ=60)

                                                       AGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCT                                        <  SRR4302540.235777/94‑1 (MQ=60)

                                                         CGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGA                                      >  SRR4302540.2317234/1‑94 (MQ=60)

                                                         CGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGA                                      <  SRR4302540.4602310/94‑1 (MQ=60)

                                                         CGAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGAAGATCGCTGA                                      >  SRR4302540.6391388/1‑94 (MQ=60)

                                                          GAGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGAT                                     >  SRR4302540.2793324/1‑94 (MQ=60)

                                                           AGAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATC                                    <  SRR4302540.3614257/94‑1 (MQ=60)

                                                            GAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCT                                   <  SRR4302540.3487731/94‑1 (MQ=60)

                                                            GAATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCT                                   >  SRR4302540.6566563/1‑94 (MQ=60)

                                                              ATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCG                                 >  SRR4302540.8612493/1‑94 (MQ=60)

                                                              ATTAATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCG                                 >  SRR4302540.8612494/1‑94 (MQ=60)

                                                                 AATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTC                              >  SRR4302540.3427317/1‑94 (MQ=60)

                                                                 AATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTC                              >  SRR4302540.3759457/1‑94 (MQ=60)

                                                                 AATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTC                              >  SRR4302540.4771759/1‑94 (MQ=60)

                                                                  ATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCT                             >  SRR4302540.7024219/1‑94 (MQ=60)

                                                                  ATCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAAGCGCGACACTTTCAAACGTGTCAGGCCGGGACGATCGCTGATCTGGCTCT                             >  SRR4302540.2409493/1‑94 (MQ=60)

                                                                   TCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTG                            <  SRR4302540.1821020/94‑1 (MQ=60)

                                                                   TCTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTG                            <  SRR4302540.1796736/94‑1 (MQ=60)

                                                                    CTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGG                           >  SRR4302540.2569713/1‑94 (MQ=60)

                                                                    CTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGG                           >  SRR4302540.5288527/1‑94 (MQ=60)

                                                                    CTGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGG                           <  SRR4302540.4410885/94‑1 (MQ=60)

                                                                     TGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGG                          >  SRR4302540.6072877/1‑94 (MQ=60)

                                                                     TGTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGG                          >  SRR4302540.9441651/1‑94 (MQ=60)

                                                                      GTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGT                         <  SRR4302540.2370194/94‑1 (MQ=60)

                                                                      GTACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGT                         <  SRR4302540.3432362/94‑1 (MQ=60)

                                                                       TACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTC                        >  SRR4302540.9637968/1‑94 (MQ=60)

                                                                        ACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCA                       <  SRR4302540.4634966/94‑1 (MQ=60)

                                                                        ACGCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCA                       <  SRR4302540.4634667/94‑1 (MQ=60)

                                                                          GCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGC                     >  SRR4302540.7385102/1‑94 (MQ=60)

                                                                          GCGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGC                     >  SRR4302540.7308049/1‑94 (MQ=60)

                                                                           CGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATTGCTGATCTCGCTCTGGGTCAGCC                    >  SRR4302540.999949/1‑94 (MQ=60)

                                                                           CGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCC                    >  SRR4302540.4916533/1‑94 (MQ=60)

                                                                           CGAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGGCAGGC                    >  SRR4302540.8905757/1‑94 (MQ=60)

                                                                            GAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCC                   >  SRR4302540.9670241/1‑94 (MQ=60)

                                                                            GAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCC                   >  SRR4302540.6533378/1‑94 (MQ=60)

                                                                            GAATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCC                   <  SRR4302540.7631097/94‑1 (MQ=60)

                                                                             AATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCG                  <  SRR4302540.9470625/94‑1 (MQ=60)

                                                                              ATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGT                 >  SRR4302540.3338905/1‑94 (MQ=60)

                                                                              ATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGT                 >  SRR4302540.128324/1‑94 (MQ=60)

                                                                              ATAATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGT                 >  SRR4302540.7276264/1‑94 (MQ=60)

                                                                                AATGCCGGACTGACGCCCTTTCTCCAGCAATCGTGACGCTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCG               <  SRR4302540.9795880/94‑1 (MQ=60)

                                                                                 ATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGT              >  SRR4302540.1518505/1‑94 (MQ=60)

                                                                                 ATGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGG              >  SRR4302540.6122973/1‑94 (MQ=60)

                                                                                  TGCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGCTCGCTGATCTCGCTCTGGGTCAGCCCGTCGTG             >  SRR4302540.1257134/1‑94 (MQ=60)

                                                                                   GCCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGCTCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGA            >  SRR4302540.9793269/1‑94 (MQ=60)

                                                                                    CCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGAT           <  SRR4302540.7979855/94‑1 (MQ=60)

                                                                                    CCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGAT           <  SRR4302540.4879103/94‑1 (MQ=60)

                                                                                    CCGGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGAT           <  SRR4302540.4879104/94‑1 (MQ=60)

                                                                                      GGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGATAG         <  SRR4302540.2114031/94‑1 (MQ=60)

                                                                                      GGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGATAG         >  SRR4302540.5260085/1‑94 (MQ=60)

                                                                                      GGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGATAG         >  SRR4302540.5364001/1‑94 (MQ=60)

                                                                                      GGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGATAG         >  SRR4302540.5364003/1‑94 (MQ=60)

                                                                                      GGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGATAG         <  SRR4302540.8211251/94‑1 (MQ=60)

                                                                                      GGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGATAG         <  SRR4302540.5615579/94‑1 (MQ=60)

                                                                                      GGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGATAG         <  SRR4302540.5615580/94‑1 (MQ=60)

                                                                                      GGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGATAG         <  SRR4302540.9405971/94‑1 (MQ=60)

                                                                                      GGACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGATAG         >  SRR4302540.3184378/1‑94 (MQ=60)

                                                                                       GACTGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGATAGT        >  SRR4302540.6509295/1‑94 (MQ=60)

                                                                                          TGACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGATAGTAAA     >  SRR4302540.7961610/1‑94 (MQ=60)

                                                                                           GACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGATAGTAAAA    >  SRR4302540.6432145/1‑94 (MQ=60)

                                                                                           GACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGATAGTAAAA    >  SRR4302540.776225/1‑94 (MQ=60)

                                                                                           GACGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCCTCGTGATAGTAAAC    >  SRR4302540.6432144/1‑94 (MQ=60)

                                                                                             CGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGCGATAGTAAAACC  >  SRR4302540.3577326/1‑94 (MQ=60)

TGTTGCAGCGAAAACTGACGACGTAATTGAGTTTCATATTCCAGACAGCCTTCAAAGCGAGAATTAATCTGTACGCGAATAATGCCGGACTGATGCCCTTTCTCCAGCAATCGCGACACTTTCAAACGTGTCAGGCCGAGACGATCGCTGATCTCGCTCTGGGTCAGCCCGTCGTGATAGTAAAACC  >  NC_000913/1599009‑1599195

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`