Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,599,943 G→A A144T (GCC→ACC)  b1513 → putative ATP‑binding component of a transport system

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,599,9430GA100.0% 696.1 / NA 199A144T (GCC→ACC) b1513putative ATP‑binding component of a transport system
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (96/103);  total (96/103)

Only 100 of 204 total aligned reads displayed.

AAACAGCTCTCCATGCAGAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCGCCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAACCTACCGCCTCGCTTACCCCT  >  NC_000913/1599853‑1600032
                                                                                          |                                                                                         
aaaCAGCTCTCCATGCAGAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCAcc                                                                                         >  2:855345/1‑93 (MQ=255)
 aaCAGCTCTCNNTGNAGAAAATGAAGAACTTGNTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCANCg                                                                                        <  2:4678552/93‑1 (MQ=255)
 aaCAGCTCTCCATGCAGAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCg                                                                                        >  2:7519186/1‑93 (MQ=255)
 aaCAGCTCTCCATGCAGAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCg                                                                                        >  1:2573758/1‑93 (MQ=255)
 aaCAGCTCTCCATGCAGAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCg                                                                                        >  2:3188756/1‑93 (MQ=255)
  aCAGCTCTCCATGCAGAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGa                                                                                       <  1:6380502/93‑1 (MQ=255)
  aCAGCTCTCCATGCAGAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGa                                                                                       <  2:5431794/93‑1 (MQ=255)
   cAGCTCTCCATGCAGAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGAt                                                                                      >  1:5854260/1‑93 (MQ=255)
      ctctCCATGCAGAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGc                                                                                   >  2:5939063/1‑93 (MQ=255)
        ctcCATGCAGAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCa                                                                                 >  1:4355617/1‑93 (MQ=255)
        ctcCATGCAGAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCa                                                                                 <  1:5575572/93‑1 (MQ=255)
          ccATGCAGAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCaaa                                                                               >  1:3770162/1‑93 (MQ=255)
           cATGCAGAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAAt                                                                              >  2:2836200/1‑93 (MQ=255)
           cATGCAGAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAAt                                                                              >  1:3386109/1‑93 (MQ=255)
            aTGCAGAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAAtg                                                                             <  1:8377655/93‑1 (MQ=255)
            aTGCAGAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAAtg                                                                             <  2:6552052/93‑1 (MQ=255)
             tGCAGAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAAtgg                                                                            >  2:10036057/1‑93 (MQ=255)
               cAGAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAAtggtg                                                                          <  2:3033566/93‑1 (MQ=255)
               cAGAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAAtggtg                                                                          <  1:6057202/93‑1 (MQ=255)
                 gAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTGACCGATCGCCAAATGGTGGa                                                                        >  2:1416253/1‑93 (MQ=255)
                 gAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCCAATggagga                                                                        >  1:4138088/1‑93 (MQ=255)
                 gAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGa                                                                        <  1:6738541/93‑1 (MQ=255)
                 gAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGa                                                                        <  2:1760887/93‑1 (MQ=255)
                 gAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGa                                                                        >  1:10006847/1‑93 (MQ=255)
                  aaaaTGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGaa                                                                       <  2:1423057/93‑1 (MQ=255)
                  aaaaTGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGGGGaa                                                                       >  2:9749437/1‑93 (MQ=255)
                   aaaTGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGaaa                                                                      <  2:9242336/93‑1 (MQ=255)
                    aaTGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAAt                                                                     >  2:1263899/1‑93 (MQ=255)
                        aagaaCTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAAtcctc                                                                 <  2:9588422/93‑1 (MQ=255)
                        aagaaCTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAAtcctc                                                                 <  1:8930342/93‑1 (MQ=255)
                        aagaaCTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAAtcctc                                                                 >  1:4052978/1‑93 (MQ=255)
                        aagaaCTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGGCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAAtcctc                                                                 >  2:7305132/1‑93 (MQ=255)
                         agaaCTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAAtcctcc                                                                <  2:23545/93‑1 (MQ=255)
                          gaaCTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCGGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAAtcctccc                                                               >  1:8269666/1‑92 (MQ=255)
                          gaaCTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGGGGAAATCCTCcg                                                               >  2:9065858/1‑93 (MQ=255)
                            aCTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCcgcg                                                             <  2:7340336/93‑1 (MQ=255)
                               tGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGc                                                          <  1:578200/93‑1 (MQ=255)
                                gCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCt                                                         <  1:6753189/93‑1 (MQ=255)
                                  tGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGa                                                       <  2:3756212/93‑1 (MQ=255)
                                     cggcgCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATgc                                                    <  1:2979334/93‑1 (MQ=255)
                                      ggcgCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATgcg                                                   >  1:4607522/1‑93 (MQ=255)
                                      ggcgCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATgcg                                                   <  2:4440483/93‑1 (MQ=255)
                                       gcgcTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATgcgc                                                  >  1:2034559/1‑93 (MQ=255)
                                         gcTGGGCTGCCAGTTTGATCTGCATAGTCTGGCATGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGa                                                <  2:4237190/93‑1 (MQ=255)
                                         gcTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGa                                                <  2:1573222/93‑1 (MQ=255)
                                           tGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACt                                              <  2:766940/93‑1 (MQ=255)
                                           tGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACt                                              <  1:3196893/93‑1 (MQ=255)
                                           tGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACt                                              <  1:6307606/93‑1 (MQ=255)
                                            gggCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTc                                             >  1:5072519/1‑93 (MQ=255)
                                             ggCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTcg                                            >  2:7155975/1‑93 (MQ=255)
                                              gCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGGGGGCTGATGCGCGACTcgc                                           <  2:2193837/93‑1 (MQ=255)
                                              gCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTcgc                                           <  1:7878125/93‑1 (MQ=255)
                                              gCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTcgc                                           >  1:6873677/1‑93 (MQ=255)
                                                 tccAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGa                                        <  2:3596981/92‑1 (MQ=255)
                                                 gCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGa                                        <  2:8147401/93‑1 (MQ=255)
                                                 gCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGa                                        >  2:3489517/1‑93 (MQ=255)
                                                 gCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGa                                        <  2:2643891/93‑1 (MQ=255)
                                                  ccAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGAt                                       <  1:8882822/93‑1 (MQ=255)
                                                  ccAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGAt                                       >  1:4854314/1‑93 (MQ=255)
                                                    aGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTc                                     >  1:8017477/1‑93 (MQ=255)
                                                     gTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCt                                    >  2:4113623/1‑93 (MQ=255)
                                                     gTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCt                                    <  2:6120334/93‑1 (MQ=255)
                                                     gTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCt                                    >  2:9447477/1‑93 (MQ=255)
                                                      tttGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTg                                   >  1:9503274/1‑93 (MQ=255)
                                                       ttGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGa                                  >  1:4124791/1‑93 (MQ=255)
                                                       ttGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGa                                  >  1:9725334/1‑93 (MQ=255)
                                                        tGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGAt                                 <  2:3068261/93‑1 (MQ=255)
                                                         taTCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGACCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATc                                <  1:8011647/92‑1 (MQ=255)
                                                         gATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATc                                <  2:719066/93‑1 (MQ=255)
                                                         gATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATc                                <  2:3673970/93‑1 (MQ=255)
                                                          aTCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATcc                               >  2:166103/1‑93 (MQ=255)
                                                           tCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCt                              <  1:9161872/93‑1 (MQ=255)
                                                           tCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCt                              >  2:9545167/1‑93 (MQ=255)
                                                           tCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATACt                              >  1:7251253/1‑93 (MQ=255)
                                                            cTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTc                             <  1:1484414/93‑1 (MQ=255)
                                                             tGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCg                            >  1:6997856/1‑93 (MQ=255)
                                                              gCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGa                           <  2:2066931/93‑1 (MQ=255)
                                                              gCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGa                           <  2:8695843/93‑1 (MQ=255)
                                                              gCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGa                           <  1:2830122/93‑1 (MQ=255)
                                                                aTAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATg                         >  1:4747578/1‑93 (MQ=255)
                                                                 tAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGa                        <  2:6453861/93‑1 (MQ=255)
                                                                 tAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGa                        <  1:1875708/93‑1 (MQ=255)
                                                                   gTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAAc                      >  2:9365942/1‑93 (MQ=255)
                                                                   gTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAAc                      <  1:2637970/93‑1 (MQ=255)
                                                                   gTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAAc                      <  1:7667155/93‑1 (MQ=255)
                                                                    tCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAAcc                     >  2:8768159/1‑93 (MQ=255)
                                                                        ggaGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAACCTAcc                 <  1:7502590/91‑1 (MQ=255)
                                                                        gCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAACCTAcc                 <  2:3877130/93‑1 (MQ=255)
                                                                        gCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAACCTAcc                 >  2:8065531/1‑93 (MQ=255)
                                                                         cAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAACCTACCg                <  2:4396833/93‑1 (MQ=255)
                                                                           ggATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAACCTACCGcc              >  1:1785042/1‑93 (MQ=255)
                                                                            gATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAACCTACCGCCt             <  1:7050622/93‑1 (MQ=255)
                                                                            gATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAACCTACCGCCt             <  1:181714/93‑1 (MQ=255)
                                                                            gATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAACCTACAGCCt             <  1:2237321/93‑1 (MQ=255)
                                                                              tCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAACCTACCGCCTCg           <  1:2262448/93‑1 (MQ=255)
                                                                              tCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAACCTACCGCCTCg           >  1:5224901/1‑93 (MQ=255)
                                                                                gCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAACCTACCGCCTCGCt         >  2:2084656/1‑93 (MQ=255)
                                                                                 cTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAACCTACCGCCTCGCtt        >  2:8307178/1‑93 (MQ=255)
                                                                                   ggATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAACCTACCTCCTCGCTTAc      <  2:6716753/93‑1 (MQ=255)
                                                                                       gTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAACCTACCGCCTCGCTTACCCCt  >  1:3669033/1‑93 (MQ=255)
                                                                                          |                                                                                         
AAACAGCTCTCCATGCAGAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCGCCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAACCTACCGCCTCGCTTACCCCT  >  NC_000913/1599853‑1600032

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AAAAACAGCTCTCCATGCAGAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCGCCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAACCTACCGCCTCGCTTACCCCTGCGG  >  NC_000913/1599851‑1600036
                                                                                            |                                                                                             
AAAAACAGCTCTCCATGCAGAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCAC                                                                                              <  SRR4302540.10005475/94‑1 (MQ=60)
AAAAACAGCTCTCCATGCAGAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCAC                                                                                              <  SRR4302540.3585441/94‑1 (MQ=60)
AAAAACAGCTCTCCATGCAGAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCAC                                                                                              <  SRR4302540.5156977/94‑1 (MQ=60)
AAAAACAGCTCTCCATGCAGAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCAC                                                                                              <  SRR4302540.6643207/94‑1 (MQ=60)
 AAAACAGCTCTCCATGCAGAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACC                                                                                             <  SRR4302540.1322469/94‑1 (MQ=60)
  AAACAGCTCTCCATGCAGAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCG                                                                                            <  SRR4302540.6827310/94‑1 (MQ=60)
  AAACAGCTCTCCATGCAGAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCG                                                                                            >  SRR4302540.2601504/1‑94 (MQ=60)
    ACAGCTCTCCATGCAGAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGAT                                                                                          >  SRR4302540.5919005/1‑94 (MQ=60)
    ACAGCTCTCCATGCAGAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGAT                                                                                          <  SRR4302540.6451538/94‑1 (MQ=60)
    ACAGCTCTCCATGCAGAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGAT                                                                                          <  SRR4302540.6451539/94‑1 (MQ=60)
      AGCTCTCCATGCAGAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCG                                                                                        >  SRR4302540.7336027/1‑94 (MQ=60)
         TCTCCATGCAGAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCA                                                                                     >  SRR4302540.4402992/1‑94 (MQ=60)
          CTCCATGCAGAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAA                                                                                    <  SRR4302540.5636957/94‑1 (MQ=60)
           TCCATGCAGAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAA                                                                                   >  SRR4302540.3811292/1‑94 (MQ=60)
            CCATGCAGAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAAT                                                                                  <  SRR4302540.9771013/94‑1 (MQ=60)
            CCATGCAGAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAAT                                                                                  >  SRR4302540.3423061/1‑94 (MQ=60)
             CATGCAGAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATG                                                                                 >  SRR4302540.5883767/1‑94 (MQ=60)
              ATGCAGAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGG                                                                                <  SRR4302540.8474870/94‑1 (MQ=60)
                 CAGAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGG                                                                             <  SRR4302540.6124522/94‑1 (MQ=60)
                 CAGAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGG                                                                             <  SRR4302540.7251161/94‑1 (MQ=60)
                  AGAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCCAATGGAGGA                                                                            >  SRR4302540.4182862/1‑94 (MQ=60)
                  AGAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGA                                                                            >  SRR4302540.4182861/1‑94 (MQ=60)
                  AGAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGA                                                                            >  SRR4302540.3361004/1‑94 (MQ=60)
                  AGAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGA                                                                            >  SRR4302540.10123388/1‑94 (MQ=60)
                   GAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAA                                                                           <  SRR4302540.2772406/94‑1 (MQ=60)
                   GAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAA                                                                           >  SRR4302540.3518624/1‑94 (MQ=60)
                   GAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAA                                                                           <  SRR4302540.6812980/94‑1 (MQ=60)
                    AAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAA                                                                          <  SRR4302540.6811921/94‑1 (MQ=60)
                       ATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCC                                                                       >  SRR4302540.8062894/1‑94 (MQ=60)
                        TGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGACATCCT                                                                      >  SRR4302540.5037105/1‑94 (MQ=60)
                        TGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCT                                                                      <  SRR4302540.6079045/94‑1 (MQ=60)
                        TGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCT                                                                      >  SRR4302540.8370364/1‑94 (MQ=60)
                         GAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTC                                                                     >  SRR4302540.4096674/1‑94 (MQ=60)
                          AAGAACTTGCTGGCGGCGCTGTGCTGCTAGTTTGATCTGCATAGTCTGGTAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCC                                                                    <  SRR4302540.1827740/94‑1 (MQ=60)
                          AAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCC                                                                    <  SRR4302540.9034513/94‑1 (MQ=60)
                          AAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCC                                                                    <  SRR4302540.9034512/94‑1 (MQ=60)
                           AGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCGGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCC                                                                   >  SRR4302540.8365754/1‑94 (MQ=60)
                           AGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCG                                                                   <  SRR4302540.2273485/94‑1 (MQ=60)
                           AGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCG                                                                   >  SRR4302540.5178468/1‑94 (MQ=60)
                           AGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCG                                                                   >  SRR4302540.4357671/1‑94 (MQ=60)
                           AGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCG                                                                   <  SRR4302540.4691750/94‑1 (MQ=60)
                              ACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGG                                                                <  SRR4302540.7836992/94‑1 (MQ=60)
                              ACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGG                                                                <  SRR4302540.1910086/94‑1 (MQ=60)
                                 TGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCT                                                             <  SRR4302540.7680740/94‑1 (MQ=60)
                                 TGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCT                                                             <  SRR4302540.584464/94‑1 (MQ=60)
                                  GCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTG                                                            <  SRR4302540.6827810/94‑1 (MQ=60)
                                      GCGGCGCTGGGCTGCCAGTTTCATCTTCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCAAAATGGTGGAAATCCTCCGCGGGCTGATGA                                                        <  SRR4302540.5546679/94‑1 (MQ=60)
                                       CGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCG                                                       >  SRR4302540.4657004/1‑94 (MQ=60)
                                       CGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCG                                                       <  SRR4302540.3012243/94‑1 (MQ=60)
                                        GGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGC                                                      >  SRR4302540.2056499/1‑94 (MQ=60)
                                         GCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCG                                                     <  SRR4302540.8210847/94‑1 (MQ=60)
                                           GCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGAC                                                   <  SRR4302540.7112053/94‑1 (MQ=60)
                                            CTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACT                                                  <  SRR4302540.9445525/94‑1 (MQ=60)
                                             TGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTC                                                 <  SRR4302540.6377846/94‑1 (MQ=60)
                                             TGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTC                                                 <  SRR4302540.3231617/94‑1 (MQ=60)
                                             TGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTC                                                 >  SRR4302540.5127355/1‑94 (MQ=60)
                                             TGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTC                                                 >  SRR4302540.3036818/1‑94 (MQ=60)
                                              GGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCG                                                >  SRR4302540.10095142/1‑94 (MQ=60)
                                              GGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCG                                                >  SRR4302540.4533868/1‑94 (MQ=60)
                                               GGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGC                                               >  SRR4302540.6949861/1‑94 (MQ=60)
                                                GCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCG                                              <  SRR4302540.7970135/94‑1 (MQ=60)
                                                   GCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGAT                                           >  SRR4302540.4906354/1‑94 (MQ=60)
                                                    CCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATT                                          <  SRR4302540.8985630/94‑1 (MQ=60)
                                                    CCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATT                                          <  SRR4302540.8985629/94‑1 (MQ=60)
                                                     CAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTC                                         <  SRR4302540.1612379/94‑1 (MQ=60)
                                                     CAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTC                                         >  SRR4302540.8110726/1‑94 (MQ=60)
                                                       GTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTG                                       >  SRR4302540.9615874/1‑94 (MQ=60)
                                                        TTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGA                                      >  SRR4302540.9839563/1‑94 (MQ=60)
                                                        TTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGA                                      >  SRR4302540.4169344/1‑94 (MQ=60)
                                                           TATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGACCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCC                                   <  SRR4302540.8104842/94‑1 (MQ=60)
                                                           GATCTGCATAGTCTGGCAGGATCGCTGGATGTCCCCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCC                                   <  SRR4302540.8106688/94‑1 (MQ=60)
                                                           GATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCC                                   >  SRR4302540.4151777/1‑94 (MQ=60)
                                                            ATCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATACT                                  >  SRR4302540.7332171/1‑94 (MQ=60)
                                                             TCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTC                                 <  SRR4302540.4873673/94‑1 (MQ=60)
                                                             TCTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTC                                 <  SRR4302540.9271826/94‑1 (MQ=60)
                                                              CTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCG                                <  SRR4302540.1500713/94‑1 (MQ=60)
                                                              CTGCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCG                                >  SRR4302540.7075522/1‑94 (MQ=60)
                                                                GCATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGAT                              <  SRR4302540.2860735/94‑1 (MQ=60)
                                                                 CATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATG                             >  SRR4302540.7018650/1‑94 (MQ=60)
                                                                 CATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATG                             >  SRR4302540.4798241/1‑94 (MQ=60)
                                                                  ATAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCCGATGCGCGACCCGCGGAGTCTGATCCTCGATGA                            >  SRR4302540.9036078/1‑94 (MQ=60)
                                                                   TAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAA                           <  SRR4302540.1896250/94‑1 (MQ=60)
                                                                   TAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAA                           <  SRR4302540.6860445/94‑1 (MQ=60)
                                                                   TAGTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAA                           <  SRR4302540.5571299/94‑1 (MQ=60)
                                                                     GTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAACC                         <  SRR4302540.2666541/94‑1 (MQ=60)
                                                                     GTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAACC                         <  SRR4302540.2666540/94‑1 (MQ=60)
                                                                     GTCTGGCAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAACC                         <  SRR4302540.7753553/94‑1 (MQ=60)
                                                                          GGAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAACCTACCG                    <  SRR4302540.7586429/94‑1 (MQ=60)
                                                                           CAGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAACCTACCGC                   >  SRR4302540.2372664/1‑94 (MQ=60)
                                                                            AGGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAACCTACCGCC                  >  SRR4302540.1804431/1‑94 (MQ=60)
                                                                             GGATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAACCTACCGCCT                 >  SRR4302540.1883059/1‑94 (MQ=60)
                                                                              GATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAACCTACCGCCTC                <  SRR4302540.7129034/94‑1 (MQ=60)
                                                                              GATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAACCTACCGCCTC                <  SRR4302540.183524/94‑1 (MQ=60)
                                                                              GATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAACCTACAGCCTC                <  SRR4302540.2261383/94‑1 (MQ=60)
                                                                               ATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAACCTACCGCCTCG               >  SRR4302540.3828929/1‑94 (MQ=60)
                                                                               ATCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAACCTACCGCCTCG               >  SRR4302540.5281872/1‑94 (MQ=60)
                                                                                TCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAACCTACCGCCTCGC              <  SRR4302540.3725351/94‑1 (MQ=60)
                                                                                TCGCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAACCTACCGCCTCGC              <  SRR4302540.2286728/94‑1 (MQ=60)
                                                                                  GCTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAACCTACCGCCTCGCTT            <  SRR4302540.1445583/94‑1 (MQ=60)
                                                                                   CTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAACCTACCGCCTCGCTTA           >  SRR4302540.2110069/1‑94 (MQ=60)
                                                                                   CTGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAACCTACCGCCTCGCTTA           >  SRR4302540.5653180/1‑94 (MQ=60)
                                                                                    TGGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAACCTACCGCCTCGCTTAC          <  SRR4302540.2925689/94‑1 (MQ=60)
                                                                                     GGATGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAACCTACCGCCTCGCTTACC         >  SRR4302540.6270049/1‑94 (MQ=60)
                                                                                        TGTCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAACCTACCGCCTCGCTTACCCCT      >  SRR4302540.3709169/1‑94 (MQ=60)
                                                                                          TCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAACCTACCGCCTCGCTTACCCCTGC    >  SRR4302540.8179041/1‑94 (MQ=60)
                                                                                          TCACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAACCTACCGCCTCGCTTACCCCTGC    <  SRR4302540.4657627/94‑1 (MQ=60)
                                                                                           CACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAACCTACCGCCTCGCTTACCCCTGCG   <  SRR4302540.1577387/94‑1 (MQ=60)
                                                                                            CCCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAACCTACCGCCTCGCTTACCCCTGCGG  <  SRR4302540.6448906/94‑1 (MQ=60)
                                                                                            ACCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAACCTACCGCCTCGCTTACCCCTGCGG  >  SRR4302540.3380579/1‑94 (MQ=60)
                                                                                            |                                                                                             
AAAAACAGCTCTCCATGCAGAAAATGAAGAACTTGCTGGCGGCGCTGGGCTGCCAGTTTGATCTGCATAGTCTGGCAGGATCGCTGGATGTCGCCGATCGCCAAATGGTGGAAATCCTCCGCGGGCTGATGCGCGACTCGCGGATTCTGATCCTCGATGAACCTACCGCCTCGCTTACCCCTGCGG  >  NC_000913/1599851‑1600036

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑