Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,612,901 |
T→C |
V25A (GTG→GCG) |
yneJ → |
putative transcriptional regulator LYSR‑type |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,612,901 | 0 | T | C | 99.6%
| 711.5
/ ‑4.9
| 224 | V25A (GTG→GCG) | yneJ | putative transcriptional regulator LYSR‑type |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (106/117); total (106/118) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.59e-01 |
Only 100 of 232 total aligned reads displayed.
CACGAATCGAGAATGCTATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGTGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATTCGCGAGAATCAGCGTT > NC_000913/1612811‑1612990
|
cACGAATCGAGAATGCTATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAgcgc > 1:9082328/1‑93 (MQ=255)
aCGAATCGAGAATGCTATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCa < 1:7625684/93‑1 (MQ=255)
aCGAATCGAGAATGCTATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCa > 2:9178200/1‑93 (MQ=255)
gAATCGAGAATGCTATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATc < 1:9716341/93‑1 (MQ=255)
gAATCGAGAATGCTATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATc < 2:6640336/93‑1 (MQ=255)
cGAGAATGCTATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGt < 1:1075076/93‑1 (MQ=255)
cGAGAATGCTATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGt > 2:5885920/1‑93 (MQ=255)
gagaATGCTATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTg < 1:8043217/93‑1 (MQ=255)
gagaATGCTATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTg > 1:6313196/1‑93 (MQ=255)
ggaATGCTATGGATCTGACCCAACTGGAGATGTTCAACGGGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGc < 1:5119179/92‑1 (MQ=255)
agaATGCTATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGTAGCAAAAGCGCATCGCGTGc < 1:2887375/93‑1 (MQ=255)
agaATGCTATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGc > 1:1027966/1‑93 (MQ=255)
agaATGATATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGc < 1:2149848/93‑1 (MQ=255)
gaATGCTATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGcc < 2:7385047/93‑1 (MQ=255)
gaATGCTATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGcc > 1:9905307/1‑93 (MQ=255)
aTGCTATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGt < 1:3689948/93‑1 (MQ=255)
aTGCTATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGt > 2:3776353/1‑93 (MQ=255)
gCTATGGATCTGACCAAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCACCCTGTGCCGTCg > 2:2151854/1‑93 (MQ=255)
aTGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGTATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAAt < 1:6403268/93‑1 (MQ=255)
aggATCTGCCCCAACTGGAGATGTGAAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAAtc < 2:5254239/92‑1 (MQ=255)
tGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTa > 2:4618394/1‑93 (MQ=255)
aCCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTAcc < 2:6096458/93‑1 (MQ=255)
aCCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTAcc < 2:8719462/93‑1 (MQ=255)
aCCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTAcc < 1:6980873/93‑1 (MQ=255)
aCCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTAcc > 2:2348209/1‑93 (MQ=255)
aCCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTAcc > 2:4844794/1‑93 (MQ=255)
cAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGt > 1:8165376/1‑93 (MQ=255)
aaCTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTc > 2:1557481/1‑93 (MQ=255)
aaCTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTc < 2:796399/93‑1 (MQ=255)
aaCTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTc > 1:3881816/1‑93 (MQ=255)
aCTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCt < 1:64760/93‑1 (MQ=255)
cTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTg > 2:3131556/1‑93 (MQ=255)
cTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTg < 2:691822/93‑1 (MQ=255)
cTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTg > 1:9174726/1‑93 (MQ=255)
tGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTgc < 2:8581014/93‑1 (MQ=255)
ggAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTgcg > 2:6788905/1‑93 (MQ=255)
gagaTGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTgcgc > 2:9779493/1‑93 (MQ=255)
gagaTGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTgcgc > 2:7178267/1‑93 (MQ=255)
aTGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAg < 1:8285362/93‑1 (MQ=255)
aTGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAg < 1:9440792/93‑1 (MQ=255)
gTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCt > 1:9866633/1‑93 (MQ=255)
ttCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTg > 2:4033190/1‑93 (MQ=255)
tCAACGCGGTTGCCGAATCTGGCAGCATAACCCAGGCTGCAGCAAAAGCTCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTgg < 1:2054803/93‑1 (MQ=255)
aaCGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGaa > 2:2217403/1‑93 (MQ=255)
aaCGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGaa > 1:523901/1‑93 (MQ=255)
aaCGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGaa > 1:7940646/1‑93 (MQ=255)
aCGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGaaa > 1:6992248/1‑93 (MQ=255)
aCGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGaaa > 1:8622678/1‑93 (MQ=255)
gcgGTTGCCGAAGCGGTCAGCATATCCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACa < 2:9476271/93‑1 (MQ=255)
ggTTGCCGAAGCTGGCAGCATAACCCAGGTTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGa < 1:6222248/93‑1 (MQ=255)
ggTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGa > 1:9222204/1‑93 (MQ=255)
ggTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGa < 2:8433096/93‑1 (MQ=255)
ggTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGa < 2:2581837/93‑1 (MQ=255)
gtagCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCACCTCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGaa < 2:8979736/90‑1 (MQ=255)
gTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGaa < 1:7220643/93‑1 (MQ=255)
gTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGaa > 1:1506510/1‑93 (MQ=255)
gTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACACGTCTGCGCCAGCTGGAAACAGaa > 2:4800614/1‑93 (MQ=255)
ttGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAAc > 2:6340366/1‑93 (MQ=255)
gCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTg > 1:6611716/1‑93 (MQ=255)
gCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTg > 1:3421982/1‑93 (MQ=255)
ccGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTgg > 2:1531993/1‑93 (MQ=255)
ccGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTgg < 1:2706711/93‑1 (MQ=255)
ccGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTgg > 2:3355158/1‑93 (MQ=255)
ccGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTgg < 2:8237117/93‑1 (MQ=255)
cGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTggg < 1:4831397/93‑1 (MQ=255)
cGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTggg < 1:6086743/93‑1 (MQ=255)
aaGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTggggg < 2:5439240/93‑1 (MQ=255)
aGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGt > 2:8104525/1‑93 (MQ=255)
gCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGtt > 2:6807255/1‑93 (MQ=255)
cTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTg < 2:4295676/93‑1 (MQ=255)
ggCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCGCTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGAt < 1:145228/93‑1 (MQ=255)
ggCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGCAACAGAACTGTGGGTTGAt > 1:6012136/1‑93 (MQ=255)
gcagcaTAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATc < 2:5695857/93‑1 (MQ=255)
cagcaTAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCt > 1:8427536/1‑93 (MQ=255)
gcaTAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGt > 1:4029354/1‑93 (MQ=255)
gcaTAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGt > 2:1170617/1‑93 (MQ=255)
caTAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAACCAGAACTGGGGGTTGATCTGtt > 2:5421983/1‑93 (MQ=255)
aTAACCCAGGCTGCAGCAAAGGCGCATCGCGTGTCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGttt < 1:9681216/93‑1 (MQ=255)
tAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTa < 1:9470353/93‑1 (MQ=255)
tAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTa > 2:2782698/1‑93 (MQ=255)
tAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGGTGATCTGTTTa > 2:1060431/1‑93 (MQ=255)
aCCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTAtt < 1:7613806/93‑1 (MQ=255)
cccAGGCTGCAGCAAAAGCGCATAGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATTc < 2:5517567/93‑1 (MQ=255)
ccAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATTcg > 2:7887479/1‑93 (MQ=255)
ggCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATTCGCga > 1:7834517/1‑93 (MQ=255)
ggCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATTCGCga > 1:2375862/1‑93 (MQ=255)
tGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATTCGCGAGaa < 1:6868425/93‑1 (MQ=255)
gcagcaAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATTCGCGAGAAt < 1:9843101/93‑1 (MQ=255)
gcagcaAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATTCGCGAGAAt > 1:6385287/1‑93 (MQ=255)
gcagcaAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATTCGCGAGAAt > 1:9500251/1‑93 (MQ=255)
cagcaAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATTCGCGAGAATc < 1:556513/93‑1 (MQ=255)
cagcaAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATTCGCGAGAATc < 1:5675698/93‑1 (MQ=255)
agcaAAAGCGCATCTCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATTCGCGAGAATCa < 1:6704836/93‑1 (MQ=255)
agcaAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATTCGCGAGAATCa < 2:8603147/93‑1 (MQ=255)
gcaAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATTCGCGAGAATCAg < 2:4448590/93‑1 (MQ=255)
caAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATTCGCGAGAATCAGc < 1:3169909/93‑1 (MQ=255)
caAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATTCGCGAGAATCAGc < 1:3618860/93‑1 (MQ=255)
caAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATTCGCGAGAATCAGc < 2:318838/93‑1 (MQ=255)
aaaaGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATTCGCGAGAATCAGCg < 1:4625473/93‑1 (MQ=255)
aaaGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATTCGCGAGAATCAGCGt < 1:3374755/93‑1 (MQ=255)
|
CACGAATCGAGAATGCTATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGTGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATTCGCGAGAATCAGCGTT > NC_000913/1612811‑1612990
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATTCACGAATCGAGAATGCTATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGTGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATTCGCGAGAATCAGCGTTTAC > NC_000913/1612808‑1612993
|
ATTCACGAATCGAGAATGCTATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGC < SRR4302540.2919110/94‑1 (MQ=60)
ATTCACGAATCGAGAATGCTATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGC < SRR4302540.2011052/94‑1 (MQ=60)
ATTCACGAATCGAGAATGCTATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGC < SRR4302540.3720589/94‑1 (MQ=60)
ATTCACGAATCGAGAATGCTATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGC < SRR4302540.121083/94‑1 (MQ=60)
TCACGAATCGAGAATGCTATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGC > SRR4302540.9191442/1‑94 (MQ=60)
ACGAATCGAGAATGCTATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCAT < SRR4302540.7711442/94‑1 (MQ=60)
CGAATCGAGAATGCTATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATC < SRR4302540.9479911/94‑1 (MQ=60)
GAATCGAGAATGCTATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCG < SRR4302540.9639504/94‑1 (MQ=60)
GAATCGAGAATGCTATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCG < SRR4302540.9830504/94‑1 (MQ=60)
GAATCGAGAATGCTATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCG > SRR4302540.5509534/1‑94 (MQ=60)
GAATCGAGAATGCTATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCC > SRR4302540.8163774/1‑94 (MQ=60)
ATCGAGAATGCTATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCG < SRR4302540.4310645/94‑1 (MQ=60)
TCGAGAATGCTATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGT < SRR4302540.3861327/94‑1 (MQ=60)
CGAGAATGCTATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTG < SRR4302540.1086058/94‑1 (MQ=60)
CGAGAATGCTATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTG > SRR4302540.6383498/1‑94 (MQ=60)
CGAGAATGCTATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTG < SRR4302540.6080952/94‑1 (MQ=60)
CGAGAATGCTATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCATG > SRR4302540.4923740/1‑94 (MQ=60)
GAGAATGCTATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGC < SRR4302540.10018973/94‑1 (MQ=60)
GAGAATGCTATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGC < SRR4302540.8136672/94‑1 (MQ=60)
GAGAATGCTATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGC > SRR4302540.1038391/1‑94 (MQ=60)
GGAATGCTATGGATCTGACCCAACTGGAGATGTTCAACGGGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCC < SRR4302540.5174602/94‑1 (MQ=60)
AGAATGCTATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGTAGCAAAAGCGCATCGCGTGCC < SRR4302540.2918816/94‑1 (MQ=60)
AGAATGCTATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCC < SRR4302540.5174603/94‑1 (MQ=60)
AGAATGCTATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCC > SRR4302540.10021029/1‑94 (MQ=60)
AGAATGATATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCC < SRR4302540.2172967/94‑1 (MQ=60)
GAATGCTATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCG > SRR4302540.6623175/1‑94 (MQ=60)
AATGCTATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGT < SRR4302540.9563609/94‑1 (MQ=60)
ATGCTATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTC < SRR4302540.3730252/94‑1 (MQ=60)
GCTATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGA > SRR4302540.8458365/1‑94 (MQ=60)
TATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAAT > SRR4302540.3224960/1‑94 (MQ=60)
TATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAAT > SRR4302540.364108/1‑94 (MQ=60)
ATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGTATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATC < SRR4302540.6474541/94‑1 (MQ=60)
ATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATC > SRR4302540.8851544/1‑94 (MQ=60)
ATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCAC > SRR4302540.9980392/1‑94 (MQ=60)
ATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCAC < SRR4302540.3718117/94‑1 (MQ=60)
CTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTC > SRR4302540.1288764/1‑94 (MQ=60)
CTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTA < SRR4302540.2290365/94‑1 (MQ=60)
GACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACC < SRR4302540.9600743/94‑1 (MQ=60)
GACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACC < SRR4302540.2604784/94‑1 (MQ=60)
ACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCC < SRR4302540.7058417/94‑1 (MQ=60)
ACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCC < SRR4302540.7723495/94‑1 (MQ=60)
CCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCG > SRR4302540.4027923/1‑94 (MQ=60)
CCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGT > SRR4302540.8260191/1‑94 (MQ=60)
CAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTC > SRR4302540.3923995/1‑94 (MQ=60)
AACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCT > SRR4302540.3023212/1‑94 (MQ=60)
ACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTG < SRR4302540.65410/94‑1 (MQ=60)
ACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTG > SRR4302540.9284776/1‑94 (MQ=60)
AGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCA < SRR4302540.5960250/94‑1 (MQ=60)
GATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAG < SRR4302540.6834150/94‑1 (MQ=60)
ATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGC > SRR4302540.3450637/1‑94 (MQ=60)
ATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGC < SRR4302540.9552897/94‑1 (MQ=60)
ATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGC < SRR4302540.8381596/94‑1 (MQ=60)
TGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCT < SRR4302540.9632870/94‑1 (MQ=60)
TGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCT > SRR4302540.9981885/1‑94 (MQ=60)
TGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCT < SRR4302540.4683305/94‑1 (MQ=60)
GTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTG > SRR4302540.9813525/1‑94 (MQ=60)
TCAACGCGGTTGCCGAATCTGGCAGCATAACCCAGGCTGCAGCAAAAGCTCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGA < SRR4302540.2076921/94‑1 (MQ=60)
TCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGA < SRR4302540.189528/94‑1 (MQ=60)
CAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAA > SRR4302540.529547/1‑94 (MQ=60)
CAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAA > SRR4302540.8033186/1‑94 (MQ=60)
AACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAA > SRR4302540.7069859/1‑94 (MQ=60)
AACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAA > SRR4302540.7069857/1‑94 (MQ=60)
AACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAA > SRR4302540.8722843/1‑94 (MQ=60)
CGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACA > SRR4302540.2752194/1‑94 (MQ=60)
GCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAG > SRR4302540.6485996/1‑94 (MQ=60)
CGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGA < SRR4302540.9406753/94‑1 (MQ=60)
CGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGA > SRR4302540.9332797/1‑94 (MQ=60)
GGTTGCCGAAGCTGGCAGCATAACCGAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTGCCCGTCTGCGCCAGCTGGAAACAGAA < SRR4302540.147501/94‑1 (MQ=60)
GGTTGCCGAAGCTGGCAGCATAACCCAGGTTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAA < SRR4302540.6291463/94‑1 (MQ=60)
GGTTGCCGAAGCTGGCAGCATAACCCAGGTTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAA < SRR4302540.6291462/94‑1 (MQ=60)
GGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAA > SRR4302540.1523138/1‑94 (MQ=60)
GTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAAC < SRR4302540.7301123/94‑1 (MQ=60)
TGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTG > SRR4302540.3459191/1‑94 (MQ=60)
TGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTG < SRR4302540.5699198/94‑1 (MQ=60)
TGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTG > SRR4302540.7405655/1‑94 (MQ=60)
TGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTG > SRR4302540.6684927/1‑94 (MQ=60)
TGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTG > SRR4302540.6684925/1‑94 (MQ=60)
GCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGG < SRR4302540.9247502/94‑1 (MQ=60)
GCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGG < SRR4302540.9307855/94‑1 (MQ=60)
CCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCCTCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGG > SRR4302540.7027697/1‑94 (MQ=60)
CCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGG < SRR4302540.668076/94‑1 (MQ=60)
CCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGG < SRR4302540.2735907/94‑1 (MQ=60)
CGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGG < SRR4302540.4883152/94‑1 (MQ=60)
CGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGG < SRR4302540.6154483/94‑1 (MQ=60)
AAGCTGGCAGCATAACCCAGGCTGCAGCAAGAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGT < SRR4302540.3728450/94‑1 (MQ=60)
AAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGT > SRR4302540.6946459/1‑94 (MQ=60)
ctGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCCTTCCGTCGAATCTCACTGCCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGAG < SRR4302540.2589328/92‑1 (MQ=60)
TGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGCAACAGAACTGTGGGTTGAT > SRR4302540.6078805/1‑94 (MQ=60)
TGGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAGCAGAACTGGTGGTTGAT > SRR4302540.5269314/1‑94 (MQ=60)
GGCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCGCTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATC < SRR4302540.146734/94‑1 (MQ=60)
GCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCT > SRR4302540.8525373/1‑94 (MQ=60)
GCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCT < SRR4302540.10006196/94‑1 (MQ=60)
GCAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCT < SRR4302540.6389988/94‑1 (MQ=60)
CAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTG > SRR4302540.1898550/1‑94 (MQ=60)
CAGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTG > SRR4302540.7298133/1‑94 (MQ=60)
AGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGT < SRR4302540.2081231/94‑1 (MQ=60)
AGCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGT > SRR4302540.4072801/1‑94 (MQ=60)
GCATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTT < SRR4302540.863800/94‑1 (MQ=60)
CATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTT < SRR4302540.3384780/94‑1 (MQ=60)
CATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTT < SRR4302540.1038968/94‑1 (MQ=60)
ATAACCCAGGCTGCAGCAAAGGCGCATCGCGTGTCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTA < SRR4302540.9795122/94‑1 (MQ=60)
ATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTA > SRR4302540.6359569/1‑94 (MQ=60)
ATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTA < SRR4302540.8107740/94‑1 (MQ=60)
ATAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTA < SRR4302540.9881621/94‑1 (MQ=60)
TAACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTAT < SRR4302540.9582688/94‑1 (MQ=60)
AACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATT < SRR4302540.83324/94‑1 (MQ=60)
ACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATTC < SRR4302540.7699399/94‑1 (MQ=60)
ACCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATTC < SRR4302540.7699400/94‑1 (MQ=60)
CCCAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATTCG < SRR4302540.8370343/94‑1 (MQ=60)
CAGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATTCGCG < SRR4302540.7974000/94‑1 (MQ=60)
AGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATTCGCGA > SRR4302540.2401469/1‑94 (MQ=60)
AGGCTGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATTCGCGA > SRR4302540.7926058/1‑94 (MQ=60)
TGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTCCCCGTCTGCGCCAGCTGGAAACAGACCTGGGGGTTGATCTGTTTATTCGCGAGAAT > SRR4302540.6456373/1‑94 (MQ=60)
TGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATTCGCGAGAAT < SRR4302540.10033147/94‑1 (MQ=60)
TGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATTCGCGAGAAT > SRR4302540.9612827/1‑94 (MQ=60)
TGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATTCGCGAGAAT > SRR4302540.6456369/1‑94 (MQ=60)
TGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATTCGCGAGAAT < SRR4302540.6944564/94‑1 (MQ=60)
TGCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGCTGATCTGTTTATTCGCGAGAAT > SRR4302540.7478552/1‑94 (MQ=60)
GCAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATTCGCGAGAATC < SRR4302540.9958164/94‑1 (MQ=60)
CAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATTCGCGAGAATCA < SRR4302540.5909588/94‑1 (MQ=60)
CAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATTCGCGAGAATCA < SRR4302540.5738194/94‑1 (MQ=60)
CAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATTCGCGAGAATCA < SRR4302540.562580/94‑1 (MQ=60)
CAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATTCGCGAGAATCA > SRR4302540.887593/1‑94 (MQ=60)
CAGCAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATTCGCGAGAATCA < SRR4302540.6218268/94‑1 (MQ=60)
AGCAAAAGCGCATCTCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATTCGCGAGAATCAG < SRR4302540.6778836/94‑1 (MQ=60)
CAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATTCGCGAGAATCAGCG > SRR4302540.4578703/1‑94 (MQ=60)
CAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATTCGCGAGAATCAGCG < SRR4302540.3204370/94‑1 (MQ=60)
CAAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATTCGCGAGAATCAGCG < SRR4302540.3658446/94‑1 (MQ=60)
AAAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATTCGCGAGAATCAGCGT < SRR4302540.4675036/94‑1 (MQ=60)
AAAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATTCGCGAGAATCAGCGTT < SRR4302540.3411635/94‑1 (MQ=60)
AAGCGCATCGCGTGCCGTCGAATCTCACTGCCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATTCGCGAGAATCAGCGTTT < SRR4302540.7993286/94‑1 (MQ=60)
AAGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATTCGCGAGAATCAGCGTTT > SRR4302540.5984785/1‑94 (MQ=60)
AGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATTCGCGAGAATCAGCGTTTA > SRR4302540.8297288/1‑94 (MQ=60)
AGCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATTCGCGAGAATCAGCGTTTA > SRR4302540.8297287/1‑94 (MQ=60)
GCGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATTCGCGAGAATCAGCGTTTAC > SRR4302540.508218/1‑94 (MQ=60)
|
ATTCACGAATCGAGAATGCTATGGATCTGACCCAACTGGAGATGTTCAACGCGGTTGCCGAAGCTGGCAGCATAACCCAGGCTGCAGCAAAAGTGCATCGCGTGCCGTCGAATCTCACTACCCGTCTGCGCCAGCTGGAAACAGAACTGGGGGTTGATCTGTTTATTCGCGAGAATCAGCGTTTAC > NC_000913/1612808‑1612993
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
