Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,616,692	C→T	G81S (GGC→AGC)	ydeB ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,616,692	0	C	T	100.0%	827.5 / NA	223	G81S (GGC→AGC)	ydeB	hypothetical protein
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (138/85); total (138/85)

Only 100 of 235 total aligned reads displayed.

GCTCTTCCGACTTGCTTTTCGCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCCGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATA  >  NC_000913/1616602‑1616781

gCTCTTCCGACTTGCTTTTCGCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAgctgc                                                                                         >  2:195312/1‑93 (MQ=255)

 ctctTCCGACTTGCTTTTCGCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAgctgcc                                                                                        <  2:5266856/93‑1 (MQ=255)

 ctctTCCGACTTGCTTTTCGCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAgctgcc                                                                                        >  2:1433581/1‑93 (MQ=255)

  tctTCCGACTTGCTTTTCGCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCt                                                                                       >  1:937283/1‑93 (MQ=255)

  tctTCCGACTTGCTTTTCGCCTCCGGGGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCt                                                                                       <  1:1306903/93‑1 (MQ=255)

  tctTCCGACTTGCTTTTCGCCACCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCt                                                                                       <  1:2022916/93‑1 (MQ=255)

    ttCCGACTTGCTTTTCGCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGctgcctgc                                                                                     >  2:1468740/1‑93 (MQ=255)

    ttCCGACTTGCTTTTCGCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGctgcctgc                                                                                     <  1:871565/93‑1 (MQ=255)

      tcGACTTTCTTTTCGCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCaa                                                                                   <  1:9575985/92‑1 (MQ=255)

      ccGACTTGCTTTTCGCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCaa                                                                                   <  1:157590/93‑1 (MQ=255)

       cGACTTGCTTTTCGCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAAt                                                                                  >  2:3873563/1‑93 (MQ=255)

       cGACTTGCTTTTCGCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAAt                                                                                  >  2:6706351/1‑93 (MQ=255)

        gACTTGCTTTTCGCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAAtt                                                                                 >  1:2490300/1‑93 (MQ=255)

         aCTTGCTTTTCGCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTc                                                                                <  2:1214756/93‑1 (MQ=255)

         aCTTGCTTTTCGCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTc                                                                                >  2:7500359/1‑93 (MQ=255)

          cTTGCTTTTCGCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCg                                                                               >  1:7704311/1‑93 (MQ=255)

               ttttCGCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGAc                                                                          >  2:3729642/1‑93 (MQ=255)

               ttttCGCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGAc                                                                          <  1:2405572/93‑1 (MQ=255)

                   cGCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCggg                                                                      >  2:158971/1‑93 (MQ=255)

                    gCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGa                                                                     >  2:7343126/1‑93 (MQ=255)

                    gCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCAAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGa                                                                     >  1:9883215/1‑93 (MQ=255)

                     ccTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGaa                                                                    >  2:3807384/1‑93 (MQ=255)

                     ccTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGaa                                                                    <  1:3968154/93‑1 (MQ=255)

                     ccTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGaa                                                                    <  2:4338854/93‑1 (MQ=255)

                      cTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAAt                                                                   >  1:8202330/1‑93 (MQ=255)

                      cTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAAt                                                                   <  1:6523398/93‑1 (MQ=255)

                      cTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAAt                                                                   <  2:7926628/93‑1 (MQ=255)

                       tCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATc                                                                  >  1:5234103/1‑93 (MQ=255)

                       tCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATc                                                                  >  2:4776004/1‑93 (MQ=255)

                        ccGGTGAATCATTCTCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAGCGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCg                                                                 <  2:6593570/93‑1 (MQ=255)

                         cGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATCAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGa                                                                >  1:4807447/1‑93 (MQ=255)

                              aatcaatcGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGc                                                           >  1:5617780/1‑93 (MQ=255)

                                  aatcGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCaaa                                                       >  1:6019566/1‑93 (MQ=255)

                                   atcGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAAt                                                      >  1:3504535/1‑93 (MQ=255)

                                   atcGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAAt                                                      >  1:6405851/1‑93 (MQ=255)

                                    tcGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATg                                                     >  2:2951435/1‑93 (MQ=255)

                                     cGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGt                                                    >  1:3175997/1‑93 (MQ=255)

                                      gCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGTAATCGAAATGCCACATGTa                                                   >  2:8630672/1‑93 (MQ=255)

                                      gCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTa                                                   <  2:9661490/93‑1 (MQ=255)

                                        tttCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATc                                                 <  1:7517417/93‑1 (MQ=255)

                                         ttCTGTTGCGTAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATcc                                                >  2:5354728/1‑93 (MQ=255)

                                         ttCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATcc                                                >  1:1914242/1‑93 (MQ=255)

                                         ttCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATcc                                                >  2:5181859/1‑93 (MQ=255)

                                            tGTAGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATc                                             <  1:7147077/93‑1 (MQ=255)

                                             gTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCa                                            >  2:9520975/1‑93 (MQ=255)

                                             gTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCa                                            >  1:377189/1‑93 (MQ=255)

                                             gTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCa                                            <  1:501685/93‑1 (MQ=255)

                                               tGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCAcc                                          <  1:3884851/93‑1 (MQ=255)

                                                gCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCa                                         <  1:9005653/93‑1 (MQ=255)

                                                   gAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGtt                                      >  1:6735446/1‑93 (MQ=255)

                                                    aaaGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTg                                     >  1:7005997/1‑93 (MQ=255)

                                                     aaGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCGATCACCAGTTGc                                    >  1:3062080/1‑93 (MQ=255)

                                                     aaGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGc                                    >  2:6349739/1‑93 (MQ=255)

                                                     aaGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGc                                    <  2:8583240/93‑1 (MQ=255)

                                                     aaGAGCATCCGAAAACCGATAAACGCGACGATGAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGc                                    >  2:8415703/1‑93 (MQ=255)

                                                      agagCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGcc                                   >  2:3335211/1‑93 (MQ=255)

                                                       aagCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGccc                                  <  2:7286672/92‑1 (MQ=255)

                                                        agCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCg                                 <  1:7069472/93‑1 (MQ=255)

                                                         gCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCgg                                <  2:2892105/93‑1 (MQ=255)

                                                            tCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGt                             >  1:6628105/1‑93 (MQ=255)

                                                            tCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGt                             >  1:5690178/1‑93 (MQ=255)

                                                            tCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGt                             >  1:8411365/1‑93 (MQ=255)

                                                               gAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAAt                          >  1:4220932/1‑93 (MQ=255)

                                                               gAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAAt                          <  2:5008080/93‑1 (MQ=255)

                                                               gAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAAt                          >  2:8099740/1‑93 (MQ=255)

                                                                aaaaCCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATa                         >  1:10040001/1‑93 (MQ=255)

                                                                 aaaCCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATAc                        >  2:313827/1‑93 (MQ=255)

                                                                 aaaCCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATAc                        >  1:6254607/1‑93 (MQ=255)

                                                                  aaCCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACg                       >  1:914183/1‑93 (MQ=255)

                                                                   aCCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGc                      >  2:622749/1‑93 (MQ=255)

                                                                   aCCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGc                      >  2:7118925/1‑93 (MQ=255)

                                                                   aCCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGc                      <  1:9780308/93‑1 (MQ=255)

                                                                   aCCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATACCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGc                      <  2:7451503/93‑1 (MQ=255)

                                                                     cGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGccc                    >  1:7395932/1‑92 (MQ=255)

                                                                      gATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGccac                   >  2:1283511/1‑93 (MQ=255)

                                                                       aTAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGccacc                  >  1:9246466/1‑93 (MQ=255)

                                                                       aTAAACGCGACGATTAAGCTGCCTGAAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGAGTAATACGacacc                  >  2:2207570/1‑93 (MQ=255)

                                                                        tAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGccacca                 >  2:9710294/1‑93 (MQ=255)

                                                                        tAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGccacca                 >  1:4586708/1‑93 (MQ=255)

                                                                        tAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGccacca                 >  1:7198650/1‑93 (MQ=255)

                                                                        tAAACGCGACGATTAAGCTGCCTGCAATTCGCAGAACGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCACGGCGTAATACGccacca                 >  2:3537693/1‑93 (MQ=255)

                                                                           aCGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACcatca              <  1:9202710/93‑1 (MQ=255)

                                                                            cgcgACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACcatcat             <  2:2681259/93‑1 (MQ=255)

                                                                            cgcgACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACcatcat             >  1:6496431/1‑93 (MQ=255)

                                                                              cgacgaTTAAGCTGCCTGCAATTGGCAGACCGGGAATCGCAATGCAAAATGTATCCATAACCAGTTGCCCGGCGTAATACGCCACCatgatgt           >  1:1703146/1‑92 (MQ=255)

                                                                              cgacgaTTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCatga           >  1:4392164/1‑93 (MQ=255)

                                                                               gacgaTTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCatgat          >  1:7960888/1‑93 (MQ=255)

                                                                                 cgaTTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATgg        <  1:3541139/93‑1 (MQ=255)

                                                                                  gaTTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATTCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGc       >  1:929207/1‑93 (MQ=255)

                                                                                  gaTTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGc       >  2:8219512/1‑93 (MQ=255)

                                                                                  gaTTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGc       <  2:3500874/93‑1 (MQ=255)

                                                                                   aTTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCa      >  2:1615199/1‑93 (MQ=255)

                                                                                    ttAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCaa     <  2:6010129/93‑1 (MQ=255)

                                                                                    ttAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCaa     >  1:1831082/1‑93 (MQ=255)

                                                                                     tAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCaaa    <  1:3289808/93‑1 (MQ=255)

                                                                                      aaGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAAt   <  2:7854288/93‑1 (MQ=255)

                                                                                      aaGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAAt   <  1:46936/93‑1 (MQ=255)

                                                                                      aaGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAAt   <  2:9074153/93‑1 (MQ=255)

                                                                                       aGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATa  >  1:6202661/1‑93 (MQ=255)

                                                                                       aGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATa  >  2:9247106/1‑93 (MQ=255)

GCTCTTCCGACTTGCTTTTCGCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCCGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATA  >  NC_000913/1616602‑1616781

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CCAGCTCTTCCGACTTGCTTTTCGCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCCGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTA  >  NC_000913/1616599‑1616785

CCAGCTCTTCCGACTTGCTTTTCGCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCT                                                                                               >  SRR4302540.5847868/1‑94 (MQ=60)

 CAGCTCTTCCGACTTGCTTTTCGCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTG                                                                                              >  SRR4302540.3826236/1‑94 (MQ=60)

  AGCTCTTCCGACTTGCTTTTCGCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGC                                                                                             <  SRR4302540.6877158/94‑1 (MQ=60)

    CTCTTCCGACTTGCTTTTCGCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCT                                                                                           >  SRR4302540.947099/1‑94 (MQ=60)

     TCTTCCGACTTGCTTTTCGCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTG                                                                                          <  SRR4302540.4775028/94‑1 (MQ=60)

     TCTTCCGACTTGCTTTTCGCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTG                                                                                          >  SRR4302540.1995867/1‑94 (MQ=60)

     TCTTCCGACTTGCTTTTCGCCTCCGGGGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTG                                                                                          <  SRR4302540.1320466/94‑1 (MQ=60)

     TCTTCCGACTTGCTTTTCGCCACCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTG                                                                                          <  SRR4302540.2044779/94‑1 (MQ=60)

       TTCCGACTTGCTTTTCGCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCA                                                                                        <  SRR4302540.880817/94‑1 (MQ=60)

       TTCCGACTTGCTTTTCGCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCA                                                                                        >  SRR4302540.778969/1‑94 (MQ=60)

         TCGACTTTCTTTTCGCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAAT                                                                                      <  SRR4302540.9689085/94‑1 (MQ=60)

         CCGACTTGCTTTTCGCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAAT                                                                                      <  SRR4302540.159185/94‑1 (MQ=60)

          CGACTTGCTTTTCGCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATT                                                                                     >  SRR4302540.2517123/1‑94 (MQ=60)

          CGACTTGCTTTTCGCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATT                                                                                     >  SRR4302540.6246049/1‑94 (MQ=60)

          CGACTTGCTTTTCGCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATT                                                                                     >  SRR4302540.5978699/1‑94 (MQ=60)

           GACTTGCTTTTCGCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTC                                                                                    >  SRR4302540.708217/1‑94 (MQ=60)

           GACTTGCTTTTCGCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTC                                                                                    >  SRR4302540.708216/1‑94 (MQ=60)

            ACTTGCTTTTCGCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCG                                                                                   >  SRR4302540.7792507/1‑94 (MQ=60)

             CTTGCTTTTCGCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGC                                                                                  >  SRR4302540.8074703/1‑94 (MQ=60)

              TTGCTTTTCGCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCA                                                                                 >  SRR4302540.5335669/1‑94 (MQ=60)

                 CTTTTCGCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGAC                                                                              >  SRR4302540.8445341/1‑94 (MQ=60)

                  TTTTCGCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGgatgct                                                                             >  SRR4302540.2651082/1‑88 (MQ=60)

                  TTTTCGCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACC                                                                             <  SRR4302540.2431512/94‑1 (MQ=60)

                  TTTTCGCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACC                                                                             >  SRR4302540.6451659/1‑94 (MQ=60)

                  TTTTCGCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACC                                                                             <  SRR4302540.9191769/94‑1 (MQ=60)

                      CGCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGA                                                                         <  SRR4302540.8480600/94‑1 (MQ=60)

                      CGCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCAAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGA                                                                         >  SRR4302540.9998622/1‑94 (MQ=60)

                       GCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAA                                                                        >  SRR4302540.4742279/1‑94 (MQ=60)

                       GCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAA                                                                        >  SRR4302540.6668854/1‑94 (MQ=60)

                       GCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAA                                                                        >  SRR4302540.8689980/1‑94 (MQ=60)

                        CCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAAT                                                                       <  SRR4302540.4010932/94‑1 (MQ=60)

                        CCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAAT                                                                       >  SRR4302540.8297646/1‑94 (MQ=60)

                         CTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATC                                                                      >  SRR4302540.5291199/1‑94 (MQ=60)

                         CTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATC                                                                      <  SRR4302540.6595851/94‑1 (MQ=60)

                          TCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCG                                                                     >  SRR4302540.6295173/1‑94 (MQ=60)

                           CCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATCAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGA                                                                    >  SRR4302540.4858901/1‑94 (MQ=60)

                             GGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAA                                                                  >  SRR4302540.7686144/1‑94 (MQ=60)

                             GGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAA                                                                  >  SRR4302540.5070007/1‑94 (MQ=60)

                              GTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAAT                                                                 >  SRR4302540.2077222/1‑94 (MQ=60)

                              GTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAAT                                                                 <  SRR4302540.972678/94‑1 (MQ=60)

                              GTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAAT                                                                 <  SRR4302540.3925147/94‑1 (MQ=60)

                               TGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATG                                                                <  SRR4302540.3309328/94‑1 (MQ=60)

                               TGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATG                                                                >  SRR4302540.5221525/1‑94 (MQ=60)

                               TGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATG                                                                >  SRR4302540.9386326/1‑94 (MQ=60)

                                GAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGC                                                               >  SRR4302540.5679597/1‑94 (MQ=60)

                                GAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGC                                                               <  SRR4302540.4345080/94‑1 (MQ=60)

                                 AATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCC                                                              >  SRR4302540.5842153/1‑94 (MQ=60)

                                   TCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAA                                                            <  SRR4302540.9382973/94‑1 (MQ=60)

                                    CAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAA                                                           >  SRR4302540.6086333/1‑94 (MQ=60)

                                     AATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAAT                                                          >  SRR4302540.3542713/1‑94 (MQ=60)

                                     AATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAAT                                                          >  SRR4302540.6477150/1‑94 (MQ=60)

                                       TCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGT                                                        <  SRR4302540.7207679/94‑1 (MQ=60)

                                       TCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGT                                                        >  SRR4302540.3210521/1‑94 (MQ=60)

                                        CGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTA                                                       >  SRR4302540.2853074/1‑94 (MQ=60)

                                          CTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATC                                                     <  SRR4302540.10018820/94‑1 (MQ=60)

                                           TTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCC                                                    >  SRR4302540.1935139/1‑94 (MQ=60)

                                           TTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCC                                                    <  SRR4302540.7464036/94‑1 (MQ=60)

                                           TTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCC                                                    <  SRR4302540.7601475/94‑1 (MQ=60)

                                            TTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCA                                                   >  SRR4302540.9959885/1‑94 (MQ=60)

                                            TTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCA                                                   >  SRR4302540.6748725/1‑94 (MQ=60)

                                              CTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATC                                                 >  SRR4302540.883740/1‑94 (MQ=60)

                                              CTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATC                                                 <  SRR4302540.7078471/94‑1 (MQ=60)

                                              CTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATC                                                 >  SRR4302540.6325450/1‑94 (MQ=60)

                                               TGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCA                                                >  SRR4302540.381091/1‑94 (MQ=60)

                                               TGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCA                                                >  SRR4302540.335508/1‑94 (MQ=60)

                                               TGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCA                                                <  SRR4302540.4596270/94‑1 (MQ=60)

                                               TGTAGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCA                                                <  SRR4302540.7226720/94‑1 (MQ=60)

                                                GTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCAC                                               <  SRR4302540.507068/94‑1 (MQ=60)

                                                  TGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCA                                             <  SRR4302540.3927052/94‑1 (MQ=60)

                                                   GCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAG                                            <  SRR4302540.9113692/94‑1 (MQ=60)

                                                     GGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTT                                          >  SRR4302540.2933678/1‑94 (MQ=60)

                                                     GGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTT                                          >  SRR4302540.6809835/1‑94 (MQ=60)

                                                      GAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTG                                         >  SRR4302540.7083748/1‑94 (MQ=60)

                                                       AAAGAGCATCTGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGC                                        <  SRR4302540.3576919/94‑1 (MQ=60)

                                                       AAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCGATCACCAGTTGC                                        >  SRR4302540.3095674/1‑94 (MQ=60)

                                                       AAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGC                                        >  SRR4302540.9864254/1‑94 (MQ=60)

                                                        AAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCC                                       >  SRR4302540.2492848/1‑94 (MQ=60)

                                                        AAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCC                                       >  SRR4302540.4019837/1‑94 (MQ=60)

                                                           AGCATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGG                                    <  SRR4302540.7148108/94‑1 (MQ=60)

                                                              ATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGT                                 >  SRR4302540.6582597/1‑94 (MQ=60)

                                                              ATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGT                                 <  SRR4302540.7700042/94‑1 (MQ=60)

                                                              ATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGT                                 >  SRR4302540.9411211/1‑94 (MQ=60)

                                                              ATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGT                                 >  SRR4302540.6701484/1‑94 (MQ=60)

                                                              ATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGT                                 >  SRR4302540.9175856/1‑94 (MQ=60)

                                                              ATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGT                                 >  SRR4302540.5752820/1‑94 (MQ=60)

                                                              ATCCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGT                                 >  SRR4302540.8508993/1‑94 (MQ=60)

                                                                CCGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAA                               >  SRR4302540.3948338/1‑94 (MQ=60)

                                                                 CGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAAT                              >  SRR4302540.4266884/1‑94 (MQ=60)

                                                                 CGAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAAT                              >  SRR4302540.3871390/1‑94 (MQ=60)

                                                                  GAAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATA                             >  SRR4302540.10156744/1‑94 (MQ=60)

                                                                   AAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATAC                            <  SRR4302540.3724587/94‑1 (MQ=60)

                                                                   AAAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATAC                            >  SRR4302540.6324197/1‑94 (MQ=60)

                                                                    AAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACG                           <  SRR4302540.5707845/94‑1 (MQ=60)

                                                                    AAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACG                           >  SRR4302540.1431277/1‑94 (MQ=60)

                                                                    AAACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACG                           >  SRR4302540.923851/1‑94 (MQ=60)

                                                                     AACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGC                          >  SRR4302540.4687051/1‑94 (MQ=60)

                                                                     AACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGC                          >  SRR4302540.9354951/1‑94 (MQ=60)

                                                                      ACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCC                         <  SRR4302540.9894936/94‑1 (MQ=60)

                                                                      ACCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCC                         <  SRR4302540.1776085/94‑1 (MQ=60)

                                                                       CCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCC                        >  SRR4302540.7478337/1‑94 (MQ=60)

                                                                       CCGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCA                        <  SRR4302540.7313932/94‑1 (MQ=60)

                                                                        CGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCAC                       >  SRR4302540.7534966/1‑94 (MQ=60)

                                                                        CGATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCAC                       >  SRR4302540.1120293/1‑94 (MQ=60)

                                                                         GATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACC                      >  SRR4302540.9357180/1‑94 (MQ=60)

                                                                         GATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACA                      >  SRR4302540.1930470/1‑94 (MQ=60)

                                                                          ATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCA                     >  SRR4302540.7278901/1‑94 (MQ=60)

                                                                          ATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCA                     >  SRR4302540.4636110/1‑94 (MQ=60)

                                                                          ATAAACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCA                     <  SRR4302540.4302849/94‑1 (MQ=60)

                                                                             AACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCA                  <  SRR4302540.3122909/94‑1 (MQ=60)

                                                                              ACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCAT                 >  SRR4302540.6568672/1‑94 (MQ=60)

                                                                              ACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCAT                 >  SRR4302540.6568671/1‑94 (MQ=60)

                                                                              ACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCAT                 <  SRR4302540.9313130/94‑1 (MQ=60)

                                                                              ACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCAT                 <  SRR4302540.9313129/94‑1 (MQ=60)

                                                                              ACGCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCAT                 <  SRR4302540.7265650/94‑1 (MQ=60)

                                                                                GCGACGATTAAGCTGCCTGCAATTGGCAGACCGGGAATCGCAATGCAAAATGTATCCATAACCAGTTGCCCGGCGTAATACGCCACCATgatgt               >  SRR4302540.1721574/1‑89 (MQ=60)

                                                                                GCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGA               >  SRR4302540.4439826/1‑94 (MQ=60)

                                                                                GCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGA               >  SRR4302540.667745/1‑94 (MQ=60)

                                                                                GCGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGA               >  SRR4302540.1721573/1‑94 (MQ=60)

                                                                                 CGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGAT              >  SRR4302540.1632520/1‑94 (MQ=60)

                                                                                 CGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGAT              <  SRR4302540.1951857/94‑1 (MQ=60)

                                                                                 CGACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGAT              >  SRR4302540.8053667/1‑94 (MQ=60)

                                                                                  GACGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATG             <  SRR4302540.5161361/94‑1 (MQ=60)

                                                                                    CGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATTCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGC           >  SRR4302540.938984/1‑94 (MQ=60)

                                                                                    CGATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGC           <  SRR4302540.3579812/94‑1 (MQ=60)

                                                                                     GATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCA          >  SRR4302540.9643696/1‑94 (MQ=60)

                                                                                      ATTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAA         >  SRR4302540.1851116/1‑94 (MQ=60)

                                                                                       TTAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAA        >  SRR4302540.3413107/1‑94 (MQ=60)

                                                                                        TAAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAAT       <  SRR4302540.3325793/94‑1 (MQ=60)

                                                                                         AAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATA      >  SRR4302540.6271707/1‑94 (MQ=60)

                                                                                         AAGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATA      <  SRR4302540.47413/94‑1 (MQ=60)

                                                                                          AGCTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATAC     >  SRR4302540.4584967/1‑94 (MQ=60)

                                                                                            CTGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGT   >  SRR4302540.2589549/1‑94 (MQ=60)

                                                                                             TGCCTGCAATTCGCAGAGCGGGAATCGAAATGCCAAATGTATCCATCACAAGTTACCCGGCGTACTACGCCACCATCATGATGaaaaaaacaca  >  SRR4302540.8169844/1‑83 (MQ=60)

                                                                                             TGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTA  <  SRR4302540.8476948/94‑1 (MQ=60)

                                                                                             TGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTA  <  SRR4302540.8465616/94‑1 (MQ=60)

                                                                                             TGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTA  >  SRR4302540.9481986/1‑94 (MQ=60)

                                                                                             TGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTAACCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTA  >  SRR4302540.981820/1‑94 (MQ=60)

CCAGCTCTTCCGACTTGCTTTTCGCCTCCGGTGAATCAATCGCTTTCTGTTGCGGAAAGAGCATCCGAAAACCGATAAACGCGACGATTAAGCCGCCTGCAATTCGCAGACCGGGAATCGAAATGCCAAATGTATCCATCACCAGTTGCCCGGCGTAATACGCCACCATCATGATGGCAAATACGTA  >  NC_000913/1616599‑1616785

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`