Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,619,900 |
T→C |
V182A (GTA→GCA) |
ydeF → |
putative transport protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,619,900 | 0 | T | C | 98.6%
| 932.8
/ ‑2.3
| 292 | V182A (GTA→GCA) | ydeF | putative transport protein |
| Reads supporting (aligned to +/- strand): ref base T (2/2); new base C (136/151); total (138/154) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 |
Only 100 of 298 total aligned reads displayed.
GCACGCTGTTGGTAATGCAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGTAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACTGTTGTGGTTTA > NC_000913/1619810‑1619989
|
gCACGCTGTTGGTAATGCAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCTAATTTTGGCaa > 1:1822692/1‑93 (MQ=255)
gCACGCTGTTGGTAATGCAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCaa < 2:3365094/93‑1 (MQ=255)
cACGCTGTTGGTAATGCAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCaaa < 2:208243/93‑1 (MQ=255)
cACGCTGTTGGTAATGCAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCaaa < 2:1921244/93‑1 (MQ=255)
aCGCTGTTGGTAATGCAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAg > 1:2499204/1‑93 (MQ=255)
aCGCTGTTGGTAATGCAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAg > 1:5477818/1‑93 (MQ=255)
aCGCTGTTGGTAATGCAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAg > 1:9077069/1‑93 (MQ=255)
cGCTGTTGGTAATGCAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAgc < 2:9676891/93‑1 (MQ=255)
cGCTGTTGGTAATGCAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAgc < 2:317229/93‑1 (MQ=255)
cTGTTGGTAATGCAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAgcgc < 1:4912350/93‑1 (MQ=255)
cTGTTGGTAATGCAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAgcgc < 2:5486375/93‑1 (MQ=255)
cTGTTGGTAATGCAGAGCATCAATCTGCCCTGCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAgcgc < 1:284187/93‑1 (MQ=255)
tGTTGGTAATGCAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGATCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCa < 1:5997360/93‑1 (MQ=255)
tGTTGGCAATGCAGAGAATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGTGCAAAGCGCa > 2:6709067/1‑93 (MQ=255)
gTTGGTAATGCAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAg < 2:9023607/93‑1 (MQ=255)
gTTGGTAATGCAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAg < 1:120771/93‑1 (MQ=255)
tGGTAATGCAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCg > 1:1597125/1‑93 (MQ=255)
ggTAATGCAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCga < 2:5734645/93‑1 (MQ=255)
aTGCAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGaaa < 2:9148957/93‑1 (MQ=255)
tGCAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGaaaa < 1:2880211/93‑1 (MQ=255)
tGCAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGaaaa > 1:2036943/1‑93 (MQ=255)
tGCAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGaaaa < 2:7778547/93‑1 (MQ=255)
tGCAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGaaaa < 2:4989686/93‑1 (MQ=255)
agagCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAatca > 1:3460342/1‑93 (MQ=255)
agCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAatcatc < 2:3873615/93‑1 (MQ=255)
gCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCg > 1:4109772/1‑93 (MQ=255)
aTCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGcc < 2:4866226/93‑1 (MQ=255)
cAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCAc < 2:4635439/93‑1 (MQ=255)
aTCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACgg > 2:8845556/1‑93 (MQ=255)
tCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGCGAAAATCATCGCACCGGa > 2:1184120/1‑93 (MQ=255)
tCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGa < 1:3670458/93‑1 (MQ=255)
tCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGa < 2:7068985/93‑1 (MQ=255)
tCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGa < 2:7042538/93‑1 (MQ=255)
cTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGaa < 2:169213/93‑1 (MQ=255)
gCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAAc < 1:7340976/93‑1 (MQ=255)
gCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAAc > 1:7972596/1‑93 (MQ=255)
cccTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACa < 1:7754790/93‑1 (MQ=255)
cccTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACa < 1:3024605/93‑1 (MQ=255)
cccTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACa < 1:3286786/93‑1 (MQ=255)
cccTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACa < 2:7312580/93‑1 (MQ=255)
ttCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCCTTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACAGAAACAGGc > 1:8681447/1‑93 (MQ=255)
ttCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGc > 2:8113220/1‑93 (MQ=255)
ttCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGc < 1:1312084/93‑1 (MQ=255)
ctggctggCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATGCAAATTTGGGCAAAGCGCACCGAGAAAATCATCGCCACGGAAACAGGCAg < 1:7851113/93‑1 (MQ=255)
tggctggcAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAgt > 2:5631318/1‑93 (MQ=255)
ctggcAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTc < 1:1171959/93‑1 (MQ=255)
ctggcAGCTATCTGGTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATGATCGCGACGGAAACAGGCAggctc > 2:1773816/1‑89 (MQ=255)
tggcAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCt > 1:8191946/1‑93 (MQ=255)
ggcAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTg > 1:6864556/1‑93 (MQ=255)
gcAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGTAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTgg < 1:5351017/93‑1 (MQ=255)
cAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGt < 2:7822543/93‑1 (MQ=255)
gCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCg > 2:425745/1‑93 (MQ=255)
gCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCg > 2:6337763/1‑93 (MQ=255)
tATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGcc > 2:3417619/1‑93 (MQ=255)
tATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGcc > 2:5274777/1‑93 (MQ=255)
aTCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCg > 2:1009725/1‑93 (MQ=255)
tGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGaaa < 1:2219159/93‑1 (MQ=255)
tttCCTCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAATCAGGTAGTTTCTGGTCGCCGAAAg > 1:8944640/2‑93 (MQ=255)
gTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAg > 1:5523532/1‑93 (MQ=255)
tCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGtt < 2:1964147/93‑1 (MQ=255)
tCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGtt > 1:5193364/1‑93 (MQ=255)
tCCGCGTTTCACATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGtt < 2:1153032/93‑1 (MQ=255)
ccGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGttt > 2:6608382/1‑93 (MQ=255)
cgcgTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGCAAGtttt > 2:6461457/1‑93 (MQ=255)
gcgTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTtta < 1:1543601/93‑1 (MQ=255)
gcgTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTtta < 1:9966545/93‑1 (MQ=255)
gTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTttatt < 1:5732633/93‑1 (MQ=255)
gTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTttatt > 1:1891428/1‑93 (MQ=255)
tttCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTttatta < 2:265932/93‑1 (MQ=255)
ttCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTAc < 2:6172978/93‑1 (MQ=255)
ttCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTAc < 2:4833755/93‑1 (MQ=255)
tCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACa > 2:2784321/1‑93 (MQ=255)
tCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACa > 2:8710958/1‑93 (MQ=255)
cATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGa > 2:5985981/1‑93 (MQ=255)
gCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATaa > 1:4659950/1‑93 (MQ=255)
gCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATaa > 1:9190499/1‑93 (MQ=255)
gCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATaa < 2:8511137/93‑1 (MQ=255)
cTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATaaa < 2:1088255/93‑1 (MQ=255)
cTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATaaa < 2:3039265/93‑1 (MQ=255)
cTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATaaa < 1:9580071/93‑1 (MQ=255)
cattcaAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACt < 2:2987347/93‑1 (MQ=255)
cattcaAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACt < 1:623443/93‑1 (MQ=255)
attcaAATTTGGGTAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACtg < 1:3922216/93‑1 (MQ=255)
attcaAATTTGGGCAAAGCGCTGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACtg < 1:1233367/93‑1 (MQ=255)
attcaAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGTTCGCCGAAAGTTTTATTACAAGATAAAGCACtg < 1:8496644/93‑1 (MQ=255)
attcaAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACtg > 1:971276/1‑93 (MQ=255)
ttcaAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACtgt > 2:1314762/1‑93 (MQ=255)
tcaAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACtgtt < 1:1096388/93‑1 (MQ=255)
aaaTTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACtgttgt < 2:6851134/93‑1 (MQ=255)
aaaTTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACtgttgt < 1:6287296/93‑1 (MQ=255)
aaaTTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACtgttgt < 1:1002305/93‑1 (MQ=255)
aaTTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACTGTtgtg < 2:2266986/93‑1 (MQ=255)
aaTTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACTGTtgtg < 2:4735723/93‑1 (MQ=255)
aTTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACTGTTGTgg > 1:9410434/1‑93 (MQ=255)
aTTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACTGTTGTgg > 2:8341845/1‑93 (MQ=255)
aTTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACTGTTGTgg > 1:5873990/1‑93 (MQ=255)
ttGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACTGTTGTGGtt < 2:9459068/93‑1 (MQ=255)
tGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACTGTTGTGGttt > 1:2123171/1‑93 (MQ=255)
tGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACTGTTGTGGttt < 2:4475473/93‑1 (MQ=255)
gggCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACTGTTGTGGTTTa > 1:2616491/1‑93 (MQ=255)
|
GCACGCTGTTGGTAATGCAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGTAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACTGTTGTGGTTTA > NC_000913/1619810‑1619989
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGGCACGCTGTTGGTAATGCAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGTAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACTGTTGTGGTTTACCTG > NC_000913/1619808‑1619993
|
CGGCACTCTGTTTGTAATGCAGAGTATCAATCTGCCCGTCGGTGTTGCAGCAATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCA < SRR4302540.1058297/94‑1 (MQ=48)
CGGCACGCTGTTGGTAATGCAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCA > SRR4302540.9135846/1‑94 (MQ=60)
CGGCACGCTGTTGGTAATGCAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCACGTTTCCCATGCTTTTCATTCAAATTTGGGCA < SRR4302540.8766446/94‑1 (MQ=60)
CGGCACGCTGTTGGTAATGCAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCAGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCA < SRR4302540.6122980/94‑1 (MQ=60)
GGCACGCTGTTGGTAATGCAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCTAATTTTGGCAA > SRR4302540.1842611/1‑94 (MQ=60)
CACGCTGTTGGTAATGCAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAG < SRR4302540.8948850/94‑1 (MQ=60)
CACGCTGTTGGTAATGCAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAG < SRR4302540.8258698/94‑1 (MQ=60)
CACGCTGTTGGTAATGCAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAG > SRR4302540.5538117/1‑94 (MQ=60)
CACGCTGTTGGTAATGCAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAG > SRR4302540.9186095/1‑94 (MQ=60)
CACGCTGTTGGTAATGCAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAG > SRR4302540.2526160/1‑94 (MQ=60)
ACGCTGTTGGTAATGCAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAACGC > SRR4302540.5472731/1‑94 (MQ=60)
ACGCTGTTGGTAATGCAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGC > SRR4302540.2535805/1‑94 (MQ=60)
CGCTGTTGGTAATGCAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCG < SRR4302540.4818676/94‑1 (MQ=60)
GCTGTTGGTAATGCAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGC > SRR4302540.16051/1‑94 (MQ=60)
CTGTTGGTAATGCAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCA < SRR4302540.4965246/94‑1 (MQ=60)
CTGTTGGTAATGCAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCA < SRR4302540.4965244/94‑1 (MQ=60)
CTGTTGGTAATGCAGAGCATCAATCTGCCCTGCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCA < SRR4302540.286986/94‑1 (MQ=60)
TGTTGGTAATGCAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAG > SRR4302540.3651747/1‑94 (MQ=60)
TGTTGGTAATGCAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGATCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAG < SRR4302540.6063820/94‑1 (MQ=60)
GTTGGTAATGCAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGC < SRR4302540.122066/94‑1 (MQ=60)
GTTGGTAATGCAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGC > SRR4302540.1687015/1‑94 (MQ=60)
GTTGGTAATGCAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGC < SRR4302540.122061/94‑1 (MQ=60)
GTTGGTAATGCAGAGCATCAATCTGCACTGCTGGCTTGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGC < SRR4302540.122060/94‑1 (MQ=60)
TTGGTAATGCAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCG > SRR4302540.1614579/1‑94 (MQ=60)
ATGCAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAA > SRR4302540.2058902/1‑94 (MQ=60)
TGCAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAAT < SRR4302540.2911544/94‑1 (MQ=60)
TGCAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAAT < SRR4302540.5567582/94‑1 (MQ=60)
CAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCA > SRR4302540.3498002/1‑94 (MQ=60)
AGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCAT < SRR4302540.210233/94‑1 (MQ=60)
GAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATC < SRR4302540.3461329/94‑1 (MQ=60)
GAGCATCAATCTGCCCTGCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATC < SRR4302540.9783933/94‑1 (MQ=60)
AGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCG > SRR4302540.4154135/1‑94 (MQ=60)
CATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCC < SRR4302540.7871607/94‑1 (MQ=60)
ATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGTAAAGCGCAGCGAGAAAATCATCGCCA > SRR4302540.1224006/1‑94 (MQ=60)
TCAGTCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCAC < SRR4302540.4580934/94‑1 (MQ=60)
CAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACG < SRR4302540.5931567/94‑1 (MQ=60)
CAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACG < SRR4302540.3936252/94‑1 (MQ=60)
CAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACG < SRR4302540.3607861/94‑1 (MQ=60)
CAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACG > SRR4302540.1224486/1‑94 (MQ=60)
AATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGG > SRR4302540.9548060/1‑94 (MQ=60)
AATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGG > SRR4302540.10104306/1‑94 (MQ=60)
AATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGG > SRR4302540.763252/1‑94 (MQ=60)
ATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGA > SRR4302540.1810097/1‑94 (MQ=60)
TCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAA < SRR4302540.3710610/94‑1 (MQ=60)
TGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAAC > SRR4302540.8065489/1‑94 (MQ=60)
GCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACA < SRR4302540.7422892/94‑1 (MQ=60)
GCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACA < SRR4302540.1265425/94‑1 (MQ=60)
CCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAG > SRR4302540.9364307/1‑94 (MQ=60)
CCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAG > SRR4302540.6005999/1‑94 (MQ=60)
CCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAG < SRR4302540.7845354/94‑1 (MQ=60)
CCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAG > SRR4302540.805634/1‑94 (MQ=60)
CCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAG < SRR4302540.3322728/94‑1 (MQ=60)
CCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAG < SRR4302540.3057830/94‑1 (MQ=60)
CCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCTCGGAAACAGG > SRR4302540.9252552/1‑94 (MQ=60)
CTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCCTTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACAGAAACAGGC > SRR4302540.8782267/1‑94 (MQ=60)
CTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGC > SRR4302540.5614483/1‑94 (MQ=60)
CTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGC < SRR4302540.1976961/94‑1 (MQ=60)
CTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGCC > SRR4302540.2911912/1‑94 (MQ=60)
TTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCA < SRR4302540.1325719/94‑1 (MQ=60)
TGCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCA < SRR4302540.1325718/94‑1 (MQ=60)
CTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGT < SRR4302540.8473104/94‑1 (MQ=60)
CTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGT < SRR4302540.9401972/94‑1 (MQ=60)
CTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATGCAAATTTGGGCAAAGCGCACCGAGAAAATCATCGCCACGGAAACAGGCAGT < SRR4302540.7942853/94‑1 (MQ=60)
CTGGCTGGCAGCTATCTGTTACGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGT < SRR4302540.5357866/94‑1 (MQ=60)
TGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTG < SRR4302540.2878878/94‑1 (MQ=60)
GGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGT < SRR4302540.1882768/94‑1 (MQ=60)
GGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGT < SRR4302540.3737002/94‑1 (MQ=60)
GCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTC > SRR4302540.8711541/1‑94 (MQ=60)
CTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCT < SRR4302540.5539580/94‑1 (MQ=60)
CTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCT > SRR4302540.8287133/1‑94 (MQ=60)
CTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCT < SRR4302540.1184089/94‑1 (MQ=60)
CTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCT > SRR4302540.6233900/1‑94 (MQ=60)
CTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCT < SRR4302540.4554459/94‑1 (MQ=60)
TGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTG > SRR4302540.6940630/1‑94 (MQ=60)
GGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAGAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGG < SRR4302540.7134178/94‑1 (MQ=60)
GGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGG < SRR4302540.5529043/94‑1 (MQ=60)
GCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGTAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGT < SRR4302540.5409740/94‑1 (MQ=60)
GCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGT < SRR4302540.275403/94‑1 (MQ=60)
CAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTC < SRR4302540.9213459/94‑1 (MQ=60)
CAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTC < SRR4302540.5349322/94‑1 (MQ=60)
AGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCG > SRR4302540.2017678/1‑94 (MQ=60)
AGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCG > SRR4302540.3216339/1‑94 (MQ=60)
GCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGC < SRR4302540.9851459/94‑1 (MQ=60)
TATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCG > SRR4302540.849121/1‑94 (MQ=60)
TTTTCCTCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAATCAGGTAGTTTCTGGTCGCCGAAAG > SRR4302540.9049803/1‑94 (MQ=60)
TGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAG > SRR4302540.5584354/1‑94 (MQ=60)
TGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAG < SRR4302540.2243090/94‑1 (MQ=60)
TGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAG < SRR4302540.6187206/94‑1 (MQ=60)
GTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCTCAGCGAGAAAATCATCGCCACGGAAACAGGCGGTGTCTGGTCGCCGAAAGT < SRR4302540.3460514/94‑1 (MQ=60)
GTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAAT > SRR4302540.9163757/1‑94 (MQ=60)
TTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTT > SRR4302540.5249913/1‑94 (MQ=60)
TTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGCT > SRR4302540.5953531/1‑94 (MQ=60)
CCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTT < SRR4302540.2195855/94‑1 (MQ=60)
CCGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTT > SRR4302540.7919236/1‑94 (MQ=60)
CGCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTA < SRR4302540.8014749/94‑1 (MQ=60)
GCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTAT < SRR4302540.10082823/94‑1 (MQ=60)
GCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTAT < SRR4302540.7499791/94‑1 (MQ=60)
GCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTAT < SRR4302540.2483941/94‑1 (MQ=60)
GCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTAT < SRR4302540.1593042/94‑1 (MQ=60)
GCGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTAT < SRR4302540.1560646/94‑1 (MQ=60)
CGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATT > SRR4302540.1912135/1‑94 (MQ=60)
CGTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGCAGCAGAAAGTTTTATT > SRR4302540.2068155/1‑94 (MQ=60)
GTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTA < SRR4302540.5795774/94‑1 (MQ=60)
GTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTA > SRR4302540.3036336/1‑94 (MQ=60)
GTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTA > SRR4302540.8741165/1‑94 (MQ=60)
GTTTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTA > SRR4302540.1117932/1‑94 (MQ=60)
TTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACA < SRR4302540.653222/94‑1 (MQ=60)
TTCCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACA < SRR4302540.2174503/94‑1 (MQ=60)
CCCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAG > SRR4302540.9817922/1‑94 (MQ=60)
CCATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGA < SRR4302540.1431323/94‑1 (MQ=60)
CCATGCTCTTCATTCAAATTTGGGCAAAGCTCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGA < SRR4302540.1132880/94‑1 (MQ=60)
CATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGAT < SRR4302540.13675/94‑1 (MQ=60)
ATGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATA > SRR4302540.7083795/1‑94 (MQ=60)
TGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAA > SRR4302540.9300723/1‑94 (MQ=60)
TGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAA > SRR4302540.4709827/1‑94 (MQ=60)
TGCTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAA < SRR4302540.2911326/94‑1 (MQ=60)
NNNTTCANTNAAATTTGGGCNNNNCGCAGCGAGAAAATCATCGCCACNGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAG < SRR4302540.3159299/94‑1 (MQ=60)
CTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAG < SRR4302540.413111/94‑1 (MQ=60)
CTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAG < SRR4302540.9693199/94‑1 (MQ=60)
CTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAG < SRR4302540.6309944/94‑1 (MQ=60)
CTTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAG < SRR4302540.6309943/94‑1 (MQ=60)
TTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGTTCGCCGAAAGTTTTATTACAAGATAAAGC > SRR4302540.9152042/1‑94 (MQ=60)
TTTTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGC > SRR4302540.5880226/1‑94 (MQ=60)
TTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCAC < SRR4302540.2770180/94‑1 (MQ=60)
TTCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCAC < SRR4302540.3234548/94‑1 (MQ=60)
TCATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACT > SRR4302540.1887913/1‑94 (MQ=60)
CATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACTG < SRR4302540.630080/94‑1 (MQ=60)
CATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACTG > SRR4302540.981268/1‑94 (MQ=60)
CATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACTG < SRR4302540.2245385/94‑1 (MQ=60)
ATTCAAATTTGGGTAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACTGT < SRR4302540.3964666/94‑1 (MQ=60)
ATTCAAATTTGGGCAAAGCGCTGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACTGT < SRR4302540.1245960/94‑1 (MQ=60)
ATTCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGTTCGCCGAAAGTTTTATTACAAGATAAAGCACTGT < SRR4302540.8595372/94‑1 (MQ=60)
TCAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACTGTTG < SRR4302540.1107669/94‑1 (MQ=60)
TCAAATTGGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACTGTTG < SRR4302540.518805/94‑1 (MQ=60)
CAAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACTGTTGT < SRR4302540.9882793/94‑1 (MQ=60)
CAAATTGGGGCAAAGCGCAGCGAGAAAAGCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACTGTTGT < SRR4302540.4054078/94‑1 (MQ=60)
AAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACTGTTGTG < SRR4302540.1012486/94‑1 (MQ=60)
AAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACTGTTGTG > SRR4302540.10193/1‑94 (MQ=60)
AAATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACTGTTGTG < SRR4302540.6357281/94‑1 (MQ=60)
AATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACTGTTGTGG > SRR4302540.8278615/1‑94 (MQ=60)
AATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACTGTTGTGG > SRR4302540.9522330/1‑94 (MQ=60)
AATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACTGTTGTGG > SRR4302540.5938921/1‑94 (MQ=60)
ATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACTGTTGTGGT < SRR4302540.4732186/94‑1 (MQ=60)
ATTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACTGTTGTGGT > SRR4302540.5602134/1‑94 (MQ=60)
TTTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACTGTTGTGGTT < SRR4302540.8856565/94‑1 (MQ=60)
TTGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACTGTTGTGGTTT > SRR4302540.2145945/1‑94 (MQ=60)
TGGGCAAAGCGGAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGCCTGGTCGCCGAAAGTTTTATTACCAGATAAAGCACTGTTGTGGTTTA > SRR4302540.2644762/1‑94 (MQ=60)
TGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACTGTTGTGGTTTA > SRR4302540.2644763/1‑94 (MQ=60)
TGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACTGTTGTGGTTTA < SRR4302540.9672796/94‑1 (MQ=60)
TGGGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACTGTTGTGGTTTA > SRR4302540.6915203/1‑94 (MQ=60)
GGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACTGTTGTGGTTTACC < SRR4302540.5188363/94‑1 (MQ=60)
GGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACTGTTGTGGTTTACC < SRR4302540.6169571/94‑1 (MQ=60)
GGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACTGTTGTGGTTTACC < SRR4302540.2123178/94‑1 (MQ=60)
GGCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACTGTTGTGGTTTACC < SRR4302540.7984438/94‑1 (MQ=60)
GCAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACTGTTGTGGTTTACCT < SRR4302540.8799992/94‑1 (MQ=60)
CAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACTGTTGTGGTTTACCTG > SRR4302540.5338193/1‑94 (MQ=60)
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CGGCACGCTGTTGGTAATGCAGAGCATCAATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTTCCCATGCTTTTCATTCAAATTTGGGTAAAGCGCAGCGAGAAAATCATCGCCACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACTGTTGTGGTTTACCTG > NC_000913/1619808‑1619993
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
