Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,632,141 |
T→C |
S166P (TCA→CCA) |
b1545 → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,632,141 | 0 | T | C | 99.6%
| 691.0
/ ‑4.9
| 238 | S166P (TCA→CCA) | b1545 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (103/134); total (103/135) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.39e-01 |
Only 100 of 241 total aligned reads displayed.
ATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGTCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAAGCAAAACTTC > NC_000913/1632051‑1632219
|
aTAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCa < 1:1119395/93‑1 (MQ=255)
aTAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCa < 1:4753782/93‑1 (MQ=255)
aTAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCa < 2:48048/93‑1 (MQ=255)
tAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAg > 2:8309162/1‑93 (MQ=37)
tAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAg > 2:6315191/1‑93 (MQ=37)
tAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAg < 2:6261406/93‑1 (MQ=37)
tAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAg > 1:4803119/1‑93 (MQ=37)
aGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAgg < 2:7893153/93‑1 (MQ=255)
gTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGgt < 2:3498858/93‑1 (MQ=255)
gTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGgt < 1:5418111/93‑1 (MQ=255)
aaGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGgtgt < 1:764485/93‑1 (MQ=255)
agagCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTa > 2:7840870/1‑93 (MQ=37)
gagCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTaa < 2:8910118/93‑1 (MQ=255)
gCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGt < 2:6465420/93‑1 (MQ=255)
gCCCGCGGCGCAGGGAAACGTTTCGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGt < 2:5526942/93‑1 (MQ=255)
cgcgGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGtata > 2:7190377/1‑93 (MQ=255)
cgcgGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGtata < 1:5978592/93‑1 (MQ=255)
cgcgGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGtata < 1:4905261/93‑1 (MQ=255)
cgcgGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGtata < 1:927812/93‑1 (MQ=255)
gcggcgCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATaa < 2:139253/93‑1 (MQ=255)
gcggcgCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATaa < 1:4531923/93‑1 (MQ=255)
gcggcgCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATaa < 1:6416355/93‑1 (MQ=255)
gcggcgCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATaa < 2:850028/93‑1 (MQ=255)
cggcgCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAg > 1:2323670/1‑93 (MQ=255)
gcAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTCTTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGcc > 1:6498271/1‑93 (MQ=255)
cAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCa < 1:1624747/93‑1 (MQ=255)
aGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCAt > 2:8590424/1‑93 (MQ=255)
aGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCAt < 1:8030584/93‑1 (MQ=255)
aGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCAt < 1:8713268/93‑1 (MQ=255)
aGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCAt < 1:3556380/93‑1 (MQ=255)
aGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCAt > 1:6919387/1‑93 (MQ=255)
aGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCAt < 2:203529/93‑1 (MQ=255)
gggAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCAtt < 1:805078/93‑1 (MQ=255)
gggAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCAtt > 2:3918910/1‑93 (MQ=255)
gggAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCAtt > 1:697872/1‑93 (MQ=255)
gggAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCAtt > 1:6814887/1‑93 (MQ=255)
gggAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCAtt > 2:4963845/1‑93 (MQ=255)
ggAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTg > 1:8186068/1‑93 (MQ=255)
aaaCGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGcc < 2:2291351/93‑1 (MQ=255)
aaaCGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGcc > 2:5105453/1‑93 (MQ=255)
aaaCGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGcc > 2:2826892/1‑93 (MQ=255)
cGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCgg > 2:4390375/1‑93 (MQ=255)
ttttGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGa > 1:7476428/1‑93 (MQ=255)
ttttGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGa > 2:3110251/1‑93 (MQ=255)
ttttGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGa > 2:892523/1‑93 (MQ=255)
tttGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGaa < 1:4641263/93‑1 (MQ=37)
ttGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAAt < 1:5634651/93‑1 (MQ=37)
ttGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAAt < 2:2926936/93‑1 (MQ=37)
ggTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTc < 2:8372307/93‑1 (MQ=37)
ggTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTc > 2:1497112/1‑93 (MQ=37)
gTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCa > 2:943190/1‑93 (MQ=255)
cGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCaaa < 1:3171186/93‑1 (MQ=255)
gACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCaaaa < 1:3856966/93‑1 (MQ=255)
gACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCaaaa < 2:4707287/93‑1 (MQ=255)
accaccTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAAc < 1:4788085/93‑1 (MQ=255)
ccaccTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAAcc > 1:605479/1‑93 (MQ=255)
caccTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCt < 1:1898420/93‑1 (MQ=25)
caccTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCt > 1:2921113/1‑93 (MQ=37)
caccTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCt < 2:5228517/93‑1 (MQ=25)
accTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTc > 1:9157167/1‑93 (MQ=21)
accTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAAACTc > 2:5459063/1‑93 (MQ=255)
ccTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTcg > 1:6203245/1‑93 (MQ=21)
cTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTcgc > 1:2487892/1‑93 (MQ=21)
tgtgTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTcgcg > 2:1708802/1‑93 (MQ=18)
gtgtTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCgg < 1:739620/93‑1 (MQ=18)
gtgtTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCgg > 1:4334221/1‑93 (MQ=21)
gtgtTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCgg > 2:2760304/1‑93 (MQ=18)
gtTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCa < 1:1753469/93‑1 (MQ=18)
gtTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACATGGCggaa > 1:6077694/1‑91 (MQ=11)
ttAAATGAAGAACAGAAACAGGCGGTCTTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGACTGCACAACCTCGCGGCaa > 1:4136518/1‑93 (MQ=11)
ttAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCaa > 1:220312/1‑93 (MQ=21)
tAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCaaa > 2:1055994/1‑93 (MQ=21)
aaaTGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAAc > 2:9487050/1‑93 (MQ=18)
aaaTGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAAc > 2:8159584/1‑93 (MQ=18)
aaTGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAAcc > 2:7591264/1‑93 (MQ=21)
aaTGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAAcc > 2:6052460/1‑93 (MQ=18)
aTGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCa < 1:2653395/93‑1 (MQ=18)
aagaaCAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCAttt < 2:6880120/93‑1 (MQ=18)
aaCAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTaa < 1:1288439/93‑1 (MQ=18)
aaCAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTaa < 1:7548451/93‑1 (MQ=18)
aCAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAag > 1:5168429/1‑93 (MQ=21)
aCAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAag < 2:1835588/93‑1 (MQ=18)
aCAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAag < 2:4082983/93‑1 (MQ=18)
aCAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAag < 2:445303/93‑1 (MQ=18)
aCAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAag < 2:5962117/93‑1 (MQ=18)
aCAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAag < 1:3917485/93‑1 (MQ=18)
cAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAaga < 1:5699205/93‑1 (MQ=18)
cAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAaga < 2:2623284/93‑1 (MQ=18)
cAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAaga < 1:5488379/93‑1 (MQ=18)
cAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAaga < 2:5698096/93‑1 (MQ=18)
gAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGc > 2:7269085/1‑93 (MQ=21)
aaaCAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGcc < 2:6800296/93‑1 (MQ=18)
aaaCAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGcc > 1:6602049/1‑93 (MQ=21)
aaCAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCa > 1:4857417/1‑93 (MQ=18)
aCAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCaa < 1:9808780/93‑1 (MQ=18)
cAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCaaa < 1:9649721/93‑1 (MQ=18)
cAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCaaa < 2:2360164/93‑1 (MQ=18)
aGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAAg < 1:5066324/93‑1 (MQ=18)
ggCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAAGc < 1:1032522/93‑1 (MQ=18)
cGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAAGCaa < 1:8424940/93‑1 (MQ=14)
|
ATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGTCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAAGCAAAACTTC > NC_000913/1632051‑1632219
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGTCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAAGCAAAACTTCAGACACCTGACATAT > NC_000913/1632048‑1632234
|
GGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGC > SRR4302540.7533878/1‑94 (MQ=26)
GGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGC > SRR4302540.5409468/1‑94 (MQ=26)
GGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGC > SRR4302540.2651652/1‑94 (MQ=26)
GGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGC > SRR4302540.2747179/1‑94 (MQ=26)
GATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCA > SRR4302540.6515672/1‑94 (MQ=26)
GATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCA < SRR4302540.6586298/94‑1 (MQ=26)
ATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAG < SRR4302540.1131006/94‑1 (MQ=25)
ATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAG < SRR4302540.4804507/94‑1 (MQ=25)
ATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAG > SRR4302540.4854522/1‑94 (MQ=25)
ATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAG > SRR4302540.4854523/1‑94 (MQ=25)
ATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAG > SRR4302540.6466277/1‑94 (MQ=25)
TAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGG < SRR4302540.976619/94‑1 (MQ=25)
TAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGG > SRR4302540.8123314/1‑94 (MQ=25)
GTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTG > SRR4302540.9777938/1‑94 (MQ=25)
GTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTG > SRR4302540.1884718/1‑94 (MQ=25)
GTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTG < SRR4302540.5477687/94‑1 (MQ=25)
GTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTG < SRR4302540.5477686/94‑1 (MQ=25)
AAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTA > SRR4302540.5954175/1‑94 (MQ=25)
AAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTA < SRR4302540.772626/94‑1 (MQ=25)
AAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTA < SRR4302540.2357212/94‑1 (MQ=25)
CCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTAT < SRR4302540.5477755/94‑1 (MQ=25)
CCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTAT > SRR4302540.8387059/1‑94 (MQ=25)
CCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATA < SRR4302540.2686676/94‑1 (MQ=25)
CGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAA < SRR4302540.937577/94‑1 (MQ=25)
CGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAA < SRR4302540.6044777/94‑1 (MQ=25)
CGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAA < SRR4302540.4958046/94‑1 (MQ=25)
GCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAG < SRR4302540.4810860/94‑1 (MQ=25)
GCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAG < SRR4302540.6487763/94‑1 (MQ=25)
GCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAG > SRR4302540.2348690/1‑94 (MQ=25)
GCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAG < SRR4302540.4580975/94‑1 (MQ=25)
CGGCGCAGGGAAACGTTTGGGTCGACCTCCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGT < SRR4302540.5534863/94‑1 (MQ=0)
GGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTATGTATAAGTG > SRR4302540.886101/1‑94 (MQ=24)
GGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTG < SRR4302540.1429075/94‑1 (MQ=25)
GCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGC < SRR4302540.4874776/94‑1 (MQ=25)
GCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGC < SRR4302540.4874775/94‑1 (MQ=25)
CGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTCTTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCC > SRR4302540.6570520/1‑94 (MQ=24)
CGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCC < SRR4302540.3804865/94‑1 (MQ=25)
CGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCC > SRR4302540.6570519/1‑94 (MQ=25)
GCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCT > SRR4302540.6738606/1‑94 (MQ=25)
GCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCA < SRR4302540.1804786/94‑1 (MQ=25)
CAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCAT > SRR4302540.6996380/1‑94 (MQ=25)
CAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCAT > SRR4302540.1750436/1‑94 (MQ=25)
CAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCAT < SRR4302540.1642543/94‑1 (MQ=25)
AGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATT < SRR4302540.8123953/94‑1 (MQ=25)
AGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATT > SRR4302540.4003872/1‑94 (MQ=25)
AGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATT > SRR4302540.6890318/1‑94 (MQ=25)
AGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATT < SRR4302540.3595238/94‑1 (MQ=25)
AGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATT < SRR4302540.8814422/94‑1 (MQ=25)
AGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATT > SRR4302540.705359/1‑94 (MQ=25)
AGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATT < SRR4302540.8131220/94‑1 (MQ=25)
AGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGGGTAAGTATAAGTGCCATT > SRR4302540.705358/1‑94 (MQ=24)
GGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTG > SRR4302540.3940648/1‑94 (MQ=25)
GGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTG < SRR4302540.813631/94‑1 (MQ=25)
GGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTG > SRR4302540.8281165/1‑94 (MQ=25)
GGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGC > SRR4302540.3790582/1‑94 (MQ=25)
GAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCC < SRR4302540.7487015/94‑1 (MQ=25)
AAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCC < SRR4302540.9326701/94‑1 (MQ=25)
AAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCC < SRR4302540.9036730/94‑1 (MQ=25)
AACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCG < SRR4302540.6135113/94‑1 (MQ=25)
ACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGG < SRR4302540.6637518/94‑1 (MQ=25)
ACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGG > SRR4302540.8155480/1‑94 (MQ=25)
GTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGA > SRR4302540.7559863/1‑94 (MQ=25)
GTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGA > SRR4302540.7559864/1‑94 (MQ=25)
GTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGCATTCGAACGAATTAAGCCCGGTGTAAGTATAAGCGCTATTGCCCGGGA > SRR4302540.7728222/1‑94 (MQ=21)
TTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAAT < SRR4302540.4690957/94‑1 (MQ=25)
TTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAAT < SRR4302540.4690958/94‑1 (MQ=25)
TTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATT < SRR4302540.7366100/94‑1 (MQ=25)
TTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATT < SRR4302540.5696668/94‑1 (MQ=25)
GGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCA < SRR4302540.9426359/94‑1 (MQ=25)
GGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCA > SRR4302540.6710317/1‑94 (MQ=25)
CGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAA > SRR4302540.6959836/1‑94 (MQ=25)
CGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAA > SRR4302540.7288431/1‑94 (MQ=25)
CGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAA < SRR4302540.3205657/94‑1 (MQ=25)
GACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAAC > SRR4302540.4838683/1‑94 (MQ=25)
GACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAAC < SRR4302540.3898898/94‑1 (MQ=25)
ACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACC < SRR4302540.4839278/94‑1 (MQ=23)
ACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACC > SRR4302540.611957/1‑94 (MQ=23)
ACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACC > SRR4302540.7612539/1‑94 (MQ=23)
CCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCT > SRR4302540.2953122/1‑94 (MQ=20)
CCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCT < SRR4302540.3084617/94‑1 (MQ=20)
CACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTC > SRR4302540.6016376/1‑94 (MQ=15)
CACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTC < SRR4302540.1919193/94‑1 (MQ=15)
CACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTC > SRR4302540.9267091/1‑94 (MQ=15)
CACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTC > SRR4302540.4666220/1‑94 (MQ=15)
ACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCG > SRR4302540.6272294/1‑94 (MQ=12)
ACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCG > SRR4302540.6272293/1‑94 (MQ=12)
CCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGC > SRR4302540.2514689/1‑94 (MQ=10)
CTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCG < SRR4302540.8429717/94‑1 (MQ=10)
TGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGG > SRR4302540.4381403/1‑94 (MQ=10)
GTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCCGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGC > SRR4302540.4935253/1‑94 (MQ=9)
GTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGC < SRR4302540.747516/94‑1 (MQ=10)
TGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACatggcggaa > SRR4302540.6145274/1‑85 (MQ=10)
TGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCA > SRR4302540.6145273/1‑94 (MQ=10)
GTTAAATGAAGAACAGAAACAGGCGGTCTTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGACTGCACAACCTCGCGGCAA > SRR4302540.4181277/1‑94 (MQ=8)
GTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAA < SRR4302540.1772471/94‑1 (MQ=10)
GTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAA > SRR4302540.4181278/1‑94 (MQ=10)
GTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAA > SRR4302540.2518243/1‑94 (MQ=10)
GTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAA > SRR4302540.222453/1‑94 (MQ=10)
TTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAA > SRR4302540.4151894/1‑94 (MQ=10)
ATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCAT < SRR4302540.2682182/94‑1 (MQ=10)
TGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATT > SRR4302540.2926848/1‑94 (MQ=10)
TGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATT < SRR4302540.3430730/94‑1 (MQ=10)
TGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATT < SRR4302540.1974846/94‑1 (MQ=10)
GAACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAA > SRR4302540.1377757/1‑94 (MQ=10)
AACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAG < SRR4302540.7633059/94‑1 (MQ=10)
AACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAG < SRR4302540.1301742/94‑1 (MQ=10)
AACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAG > SRR4302540.5224648/1‑94 (MQ=10)
ACAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGA < SRR4302540.3959898/94‑1 (MQ=10)
CAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAG < SRR4302540.4555609/94‑1 (MQ=10)
CAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAG < SRR4302540.5761959/94‑1 (MQ=10)
CAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAG > SRR4302540.5733940/1‑94 (MQ=10)
CAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAG < SRR4302540.5548800/94‑1 (MQ=10)
CAGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAG < SRR4302540.5548799/94‑1 (MQ=10)
AGAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAGCCTCGCGGCAAACCATTTTAAGAGC < SRR4302540.4760456/94‑1 (MQ=9)
GAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCC < SRR4302540.2243799/94‑1 (MQ=10)
GAAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCC > SRR4302540.6675156/1‑94 (MQ=10)
AAACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCA > SRR4302540.4909491/1‑94 (MQ=10)
AACAGGCGGTATTCGAACGAATTAAGCCAGTTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAA < SRR4302540.8107654/94‑1 (MQ=9)
AACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAA < SRR4302540.250436/94‑1 (MQ=10)
ACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAA < SRR4302540.9923586/94‑1 (MQ=10)
ACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAA < SRR4302540.1251038/94‑1 (MQ=10)
ACAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAA < SRR4302540.6056570/94‑1 (MQ=10)
CAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAAG < SRR4302540.9763349/94‑1 (MQ=10)
CAGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAAG < SRR4302540.5221985/94‑1 (MQ=10)
AGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAAGC > SRR4302540.4988971/1‑94 (MQ=7)
AGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAAGC < SRR4302540.5121101/94‑1 (MQ=7)
AGGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAAGC < SRR4302540.5121102/94‑1 (MQ=7)
GGCGGTATTCGAGCGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAGCCTCGCGGCAAACCATTTTAAGAGCCAAAGCA < SRR4302540.1043021/94‑1 (MQ=4)
GGCGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAAGCA < SRR4302540.1043020/94‑1 (MQ=5)
CGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAAGCAAA < SRR4302540.8771001/94‑1 (MQ=0)
CGGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAAGCAAA < SRR4302540.8522728/94‑1 (MQ=0)
GGTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAAGCAAAA < SRR4302540.3732883/94‑1 (MQ=0)
GTATTCGAACGAATTAAGTCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAAGCAAAAC < SRR4302540.3775300/94‑1 (MQ=0)
GTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAAGCAAAAC < SRR4302540.2146255/94‑1 (MQ=0)
GTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAAGCAAAAC < SRR4302540.2357779/94‑1 (MQ=0)
GTATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAAGCAAAAC > SRR4302540.952681/1‑94 (MQ=0)
TATTCGAACGAATTAAGTCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAAGCAAAACT < SRR4302540.146627/94‑1 (MQ=0)
TATTCGAACGAATTAAGTCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAAGCAAAACT < SRR4302540.2824110/94‑1 (MQ=0)
TATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAAGCAAAACT > SRR4302540.5648098/1‑94 (MQ=0)
TATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGC‑AACCATTTTAAGAACCAAAagcaaactc > SRR4302540.2964467/1‑85 (MQ=0)
ATTCGAACGAATTAAGTCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAAGCAAAACTT > SRR4302540.8396930/1‑94 (MQ=0)
ATTCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAAGCAAAACTT > SRR4302540.7448948/1‑94 (MQ=0)
TCGAACGAATTAAGTCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAAGCAAAACTTCA < SRR4302540.1520297/94‑1 (MQ=0)
TCGAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAAGCAAAACTTCA < SRR4302540.7154940/94‑1 (MQ=0)
TGAACGAATTAAGTCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAAGCAAAACTTCAG < SRR4302540.7549647/94‑1 (MQ=0)
GAACGAATTAAGTCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTGTAAGAGCCAAAGCAAAACCTCACA > SRR4302540.6994839/1‑94 (MQ=0)
GAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAAGCAAAACTTCAGA > SRR4302540.2701921/1‑94 (MQ=0)
GAACGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAAGCAAAACTTCAGA < SRR4302540.6455129/94‑1 (MQ=0)
AACGAATTAAGTCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAAGCAAAACTTCAGAC > SRR4302540.8761197/1‑94 (MQ=0)
AACGAATTAAGTCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAAGCAAAACTTCAGAC > SRR4302540.5846993/1‑94 (MQ=0)
AACGAATTAAGTCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAAGCAAAACTTCAGAC > SRR4302540.6669072/1‑94 (MQ=0)
ACGAATTAAGTCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAAGCAAAACTTCAGACA < SRR4302540.6265925/94‑1 (MQ=0)
CGAATTAAGTCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAAGCAAAACTTCAGACAC < SRR4302540.3930639/94‑1 (MQ=0)
CGAATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAAGCAAAACTTCAGACAC > SRR4302540.8444249/1‑94 (MQ=0)
GAATTAAGTCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAAGCAAAACTTCAGACACC < SRR4302540.2283013/94‑1 (MQ=0)
AATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAAGCAAAACTTCAGACACCT > SRR4302540.4923648/1‑94 (MQ=0)
ATTAAGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAAGCAAAACTTCAGACACCTG < SRR4302540.685510/94‑1 (MQ=0)
TTAAGTCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAAGCAAAACTTCAGACACCTGA > SRR4302540.3121047/1‑94 (MQ=0)
TTAAGTCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAAGCAAAACTTCAGACACCTGA < SRR4302540.9871243/94‑1 (MQ=0)
AGTCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAAGCAAAACTTCAGACACCTGACAT < SRR4302540.5396100/94‑1 (MQ=0)
AGTCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAAGCAAAACTTCAGACACCTGACAT > SRR4302540.2529379/1‑94 (MQ=0)
AGTCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAAGCAAAACTTCAGACACCTGACAT < SRR4302540.1242570/94‑1 (MQ=0)
AGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAAGCAAAACTTCAGACACCTGACAT > SRR4302540.1863602/1‑94 (MQ=0)
AGCCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAAGCAAAACTTCAGACACCTGACAT < SRR4302540.7763166/94‑1 (MQ=0)
TCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAAGCAAAACTTCAGACACCTGACATAT < SRR4302540.1286597/94‑1 (MQ=0)
GCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAAGCAAAACTTCAGACACCTGACATAT < SRR4302540.5021742/94‑1 (MQ=0)
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GGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGGTATTCGAACGAATTAAGTCAGGTGTAAGTATAAGTGCCATTGCCCGGGAATTCAAAACCTCGCGGCAAACCATTTTAAGAGCCAAAGCAAAACTTCAGACACCTGACATAT > NC_000913/1632048‑1632234
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
