Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,642,279	A→G	V30A (GTC→GCC)	b1560 ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,642,279	0	A	G	99.6%	755.4 / NA	238	V30A (GTC→GCC)	b1560	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (116/120); total (116/122)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 247 total aligned reads displayed.

GATGGCAGATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGACCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCACG  >  NC_000913/1642189‑1642368

gATGGCAGATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGgcc                                                                                         >  2:8304050/1‑93 (MQ=255)

  tGGCAGATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGgccac                                                                                       >  1:4731555/1‑93 (MQ=255)

    gCAGATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGccacca                                                                                     <  2:8783778/93‑1 (MQ=255)

      aGATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGc                                                                                   >  2:8822401/1‑93 (MQ=255)

       gATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGcc                                                                                  >  1:8858336/1‑93 (MQ=255)

       gATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGcc                                                                                  <  1:5612087/93‑1 (MQ=255)

        aTTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGccc                                                                                 >  1:5461268/1‑93 (MQ=255)

         ttACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCa                                                                                >  1:6145261/1‑93 (MQ=255)

         ttACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCa                                                                                <  2:4114251/93‑1 (MQ=255)

          tACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCaa                                                                               >  2:5641266/1‑93 (MQ=255)

           aCGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAg                                                                              <  1:2830331/93‑1 (MQ=255)

             gCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCt                                                                            >  1:2943766/1‑93 (MQ=255)

              cATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTc                                                                           <  1:6516500/93‑1 (MQ=255)

              cATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTc                                                                           >  2:6136957/1‑93 (MQ=255)

              cATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTc                                                                           >  2:103691/1‑93 (MQ=255)

              cATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTc                                                                           <  2:4606317/93‑1 (MQ=255)

              cATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTc                                                                           >  2:774129/1‑93 (MQ=255)

               aTGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCa                                                                          >  2:2047342/1‑93 (MQ=255)

               aTGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCa                                                                          >  2:5482573/1‑93 (MQ=255)

                tGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAg                                                                         <  1:7229510/93‑1 (MQ=255)

                 gCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAgg                                                                        <  2:6395775/93‑1 (MQ=255)

                 gCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAgg                                                                        >  1:8187293/1‑93 (MQ=255)

                  cTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGc                                                                       <  2:7446371/93‑1 (MQ=255)

                  cTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGc                                                                       <  1:4337548/93‑1 (MQ=255)

                   tttttGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCa                                                                      <  1:7022119/93‑1 (MQ=255)

                   tttttGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCa                                                                      <  1:4865248/93‑1 (MQ=255)

                   tttttGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCa                                                                      <  1:1938072/93‑1 (MQ=255)

                    ttttGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCAc                                                                     >  1:1235620/1‑93 (MQ=255)

                       tGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAg                                                                  >  1:7588316/1‑93 (MQ=255)

                         gttccggttccACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGaa                                                                >  2:3945935/1‑93 (MQ=255)

                          gtccggttccCCCAGCCCTCGAGGATTCTTAACTATCTGTATGGATTCCCGGCCCGGCTTAAGGGCCCCCAGCCCAAGCTCAGGCACCAGAAc                                                               <  1:6588171/92‑1 (MQ=255)

                           tccggttccACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGTCCACCAGCCCAAGCTCAGGCACCAGAACa                                                              <  2:9475712/93‑1 (MQ=255)

                           tccggttccACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACa                                                              >  1:186805/1‑93 (MQ=255)

                           tccggttccACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACa                                                              <  2:1870929/93‑1 (MQ=255)

                            ccggttccACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAg                                                             <  2:7869608/93‑1 (MQ=255)

                               gttccACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTc                                                          <  2:3366504/93‑1 (MQ=255)

                               gttccACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACACGTc                                                          >  1:5530202/1‑93 (MQ=255)

                                 tccACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTa                                                        <  1:3676928/93‑1 (MQ=255)

                                  tctccaGCACTCGAGGATTATGCAATATCTGTATGGATTCACGGCCCGGCTTAGGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTaa                                                       <  1:8262221/90‑1 (MQ=255)

                                  ccaccaGCACTCGAGGATTATGACATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTaa                                                       <  2:7225334/93‑1 (MQ=255)

                                   caccaGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAg                                                      <  1:796865/93‑1 (MQ=255)

                                     ccaGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTa                                                    >  1:7740663/1‑93 (MQ=255)

                                     ccaGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTa                                                    <  2:3977368/93‑1 (MQ=255)

                                     ccaGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTa                                                    >  1:105444/1‑93 (MQ=255)

                                      caGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTaa                                                   <  1:2276016/93‑1 (MQ=255)

                                      caGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTaa                                                   <  2:6493161/93‑1 (MQ=255)

                                       aGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAAt                                                  >  1:3349310/1‑93 (MQ=255)

                                        gCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATa                                                 <  1:9350036/93‑1 (MQ=255)

                                        gCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATa                                                 <  1:9048040/93‑1 (MQ=255)

                                          acgcGAGGATTATTAAATATCTGTATGGATTCACGGCCCGGCGTAAGGGCCACCAGCCCAACCTCAGGCACCAGAACAGGTCTAAGTAATAcc                                               <  1:2733730/90‑1 (MQ=255)

                                          aCTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATAcc                                               >  1:8608598/1‑93 (MQ=255)

                                            tCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCg                                             >  2:1319071/1‑93 (MQ=255)

                                             cGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGc                                            >  1:2666356/1‑93 (MQ=255)

                                              gAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCa                                           <  1:5268756/93‑1 (MQ=255)

                                               aGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCAc                                          <  2:9789247/93‑1 (MQ=255)

                                               aGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCAc                                          <  2:4738249/93‑1 (MQ=255)

                                               aGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCAc                                          <  1:5709643/93‑1 (MQ=255)

                                                 gATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGt                                        <  2:8606936/93‑1 (MQ=255)

                                                 gATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGt                                        >  1:676003/1‑93 (MQ=255)

                                                  aTTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGtt                                       >  1:246828/1‑93 (MQ=255)

                                                  aTTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGtt                                       >  2:3525333/1‑93 (MQ=255)

                                                   ttATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTa                                      <  1:9201174/93‑1 (MQ=255)

                                                   ttATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTa                                      >  1:7564977/1‑93 (MQ=255)

                                                    tATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTAc                                     >  1:8532648/1‑93 (MQ=255)

                                                    tATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTAc                                     <  1:3230065/93‑1 (MQ=255)

                                                    tATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTAc                                     <  2:3237879/93‑1 (MQ=255)

                                                    tATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTAc                                     >  2:1990915/1‑93 (MQ=255)

                                                     aTGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGGCCAAGCTCAGGCACCAGAACAGGGCTAAGTAATACCCGCCCGTTAcc                                    >  2:8082861/1‑93 (MQ=255)

                                                     aTGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTAcc                                    <  2:8184457/93‑1 (MQ=255)

                                                      tGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCt                                   <  2:7252592/93‑1 (MQ=255)

                                                      tGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCt                                   >  1:1556307/1‑93 (MQ=255)

                                                        aaaTATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTcc                                 >  1:379439/1‑93 (MQ=255)

                                                           tatCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGa                              <  1:3097356/93‑1 (MQ=255)

                                                            atCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGAt                             >  1:784115/1‑93 (MQ=255)

                                                            atCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGAt                             <  1:9862278/93‑1 (MQ=255)

                                                             tCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATc                            >  1:5667380/1‑93 (MQ=255)

                                                             tCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATc                            <  2:9740469/93‑1 (MQ=255)

                                                             tCTGTATGCATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATc                            <  2:9326231/93‑1 (MQ=255)

                                                              cTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATcc                           >  2:5652648/1‑93 (MQ=255)

                                                               tGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCg                          >  2:8316446/1‑93 (MQ=255)

                                                               tGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCg                          >  1:3499320/1‑93 (MQ=255)

                                                                gTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGt                         >  1:6191367/1‑93 (MQ=255)

                                                                 tATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGtt                        <  1:3843399/93‑1 (MQ=255)

                                                                   tGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGc                      <  2:5975221/93‑1 (MQ=255)

                                                                   tGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGc                      <  2:3135059/93‑1 (MQ=255)

                                                                     gATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTg                    >  2:853542/1‑93 (MQ=255)

                                                                     gATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTg                    >  1:41798/1‑93 (MQ=255)

                                                                     gATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTg                    <  1:3027274/93‑1 (MQ=255)

                                                                          aCGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAg               >  2:5105414/1‑93 (MQ=255)

                                                                           cGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGt              <  1:10034479/93‑1 (MQ=255)

                                                                           cGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGt              <  2:6370759/93‑1 (MQ=255)

                                                                            cgCCCGGCTTAAGGGCCACCAGCNCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTg             <  1:2096970/92‑1 (MQ=255)

                                                                             gCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGc            >  1:4055352/1‑93 (MQ=255)

                                                                             gCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGc            <  1:5955126/93‑1 (MQ=255)

                                                                             gCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGc            <  1:6384584/93‑1 (MQ=255)

                                                                              cccGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCg           <  2:4048303/93‑1 (MQ=255)

                                                                               ccGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCgg          <  2:4249894/93‑1 (MQ=255)

                                                                                 ggCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGa        <  2:1762773/93‑1 (MQ=255)

                                                                                  gCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGAc       <  2:6765825/93‑1 (MQ=255)

                                                                                   cTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACg      >  1:7452563/1‑93 (MQ=255)

GATGGCAGATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGACCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCACG  >  NC_000913/1642189‑1642368

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GGATGGCAGATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGACCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCACGTGG  >  NC_000913/1642188‑1642371

GGATGGCAGATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCC                                                                                            >  SRR4302540.1922223/1‑94 (MQ=60)

  ATGGCAGATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCAC                                                                                          >  SRR4302540.4782083/1‑94 (MQ=60)

  ATGGCAGATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCAC                                                                                          <  SRR4302540.8684743/94‑1 (MQ=60)

  ATGGCAGATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCAC                                                                                          >  SRR4302540.8234033/1‑94 (MQ=60)

   TGGCAGATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACC                                                                                         >  SRR4302540.6688144/1‑94 (MQ=60)

    GGCAGATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCA                                                                                        >  SRR4302540.5477575/1‑94 (MQ=60)

      CAGATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGC                                                                                      >  SRR4302540.7101529/1‑94 (MQ=60)

      CAGATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGC                                                                                      >  SRR4302540.10006061/1‑94 (MQ=60)

       AGATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCC                                                                                     >  SRR4302540.8960837/1‑94 (MQ=60)

        GATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCC                                                                                    <  SRR4302540.5673822/94‑1 (MQ=60)

        GATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCC                                                                                    <  SRR4302540.2701856/94‑1 (MQ=60)

        GATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCC                                                                                    >  SRR4302540.5521378/1‑94 (MQ=60)

         ATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCA                                                                                   >  SRR4302540.6213710/1‑94 (MQ=60)

          TTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAA                                                                                  <  SRR4302540.3690094/94‑1 (MQ=60)

          TTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAA                                                                                  <  SRR4302540.5090905/94‑1 (MQ=60)

           TACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAG                                                                                 >  SRR4302540.2330658/1‑94 (MQ=60)

            ACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGC                                                                                <  SRR4302540.2860946/94‑1 (MQ=60)

             CGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCT                                                                               >  SRR4302540.2976128/1‑94 (MQ=60)

             CGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCT                                                                               >  SRR4302540.2976129/1‑94 (MQ=60)

              TCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTC                                                                              <  SRR4302540.1896894/94‑1 (MQ=60)

              GCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTC                                                                              <  SRR4302540.8285491/94‑1 (MQ=60)

              GCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTC                                                                              <  SRR4302540.2979379/94‑1 (MQ=60)

               CATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCA                                                                             <  SRR4302540.766906/94‑1 (MQ=60)

               CATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCA                                                                             <  SRR4302540.6588892/94‑1 (MQ=60)

               CATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGACCACCAGCCCAAGCTCA                                                                             <  SRR4302540.7021580/94‑1 (MQ=60)

                ATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAG                                                                            >  SRR4302540.186195/1‑94 (MQ=60)

                 TGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGG                                                                           <  SRR4302540.7310132/94‑1 (MQ=60)

                 TGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGG                                                                           <  SRR4302540.3416284/94‑1 (MQ=60)

                 TGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGG                                                                           >  SRR4302540.8282408/1‑94 (MQ=60)

                   CTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCA                                                                         <  SRR4302540.4384771/94‑1 (MQ=60)

                   CTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCA                                                                         <  SRR4302540.2140345/94‑1 (MQ=60)

                    TTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCAC                                                                        <  SRR4302540.1959180/94‑1 (MQ=60)

                    TTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCAC                                                                        >  SRR4302540.1248239/1‑94 (MQ=60)

                    TTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCAC                                                                        <  SRR4302540.7100122/94‑1 (MQ=60)

                    TTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCAC                                                                        <  SRR4302540.4917429/94‑1 (MQ=60)

                    CTTTTGGTGCCGCTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCAC                                                                        <  SRR4302540.4917428/94‑1 (MQ=60)

                       TTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAG                                                                     >  SRR4302540.7673539/1‑94 (MQ=60)

                       TTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAG                                                                     <  SRR4302540.766268/94‑1 (MQ=60)

                        TGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGA                                                                    >  SRR4302540.8845130/1‑94 (MQ=60)

                        TGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGA                                                                    >  SRR4302540.2618131/1‑94 (MQ=60)

                        TGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGA                                                                    >  SRR4302540.2618133/1‑94 (MQ=60)

                        TGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGA                                                                    >  SRR4302540.4380877/1‑94 (MQ=60)

                           TTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACA                                                                 >  SRR4302540.188662/1‑94 (MQ=60)

                           TTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACA                                                                 <  SRR4302540.6661143/94‑1 (MQ=60)

                           GTCCGGTTCCCCCAGCCCTCGAGGATTCTTAACTATCTGTATGGATTCCCGGCCCGGCTTAAGGGCCCCCAGCCCAAGCTCAGGCACCAGAACA                                                                 <  SRR4302540.6661144/94‑1 (MQ=60)

                            TCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAG                                                                <  SRR4302540.7882582/94‑1 (MQ=60)

                            TCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAG                                                                <  SRR4302540.7882581/94‑1 (MQ=60)

                            TCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAG                                                                <  SRR4302540.5715507/94‑1 (MQ=60)

                               GGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTC                                                             >  SRR4302540.5591108/1‑94 (MQ=60)

                               GGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTC                                                             >  SRR4302540.1442279/1‑94 (MQ=60)

                               GGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTC                                                             >  SRR4302540.6605837/1‑94 (MQ=60)

                               GGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACACGTC                                                             >  SRR4302540.5591107/1‑94 (MQ=60)

                                GTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCT                                                            <  SRR4302540.7618192/94‑1 (MQ=60)

                                 TTCCACCAGCACTCGAGGATTATGAAATATCTTTATGGATTCACGGCCCGGCTTACGGACCCCCAGCCCAAGCTCAGGCACCAGAACAGtgcta                                                           >  SRR4302540.7507497/1‑89 (MQ=60)

                                 TTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTA                                                           >  SRR4302540.9344543/1‑94 (MQ=60)

                                  TCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAA                                                          <  SRR4302540.3717126/94‑1 (MQ=60)

                                   tctCCAGCACTCGAGGATTATGCAATATCTGTATGGATTCACGGCCCGGCTTAGGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAG                                                         <  SRR4302540.8358231/91‑1 (MQ=60)

                                   CCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAG                                                         <  SRR4302540.9366421/94‑1 (MQ=60)

                                   CCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAG                                                         <  SRR4302540.3098580/94‑1 (MQ=60)

                                   CCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAG                                                         <  SRR4302540.8358232/94‑1 (MQ=60)

                                   CCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAG                                                         <  SRR4302540.5756317/94‑1 (MQ=60)

                                    CACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGT                                                        <  SRR4302540.805328/94‑1 (MQ=60)

                                     ACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTA                                                       >  SRR4302540.9993532/1‑94 (MQ=60)

                                     ACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTA                                                       >  SRR4302540.106568/1‑94 (MQ=60)

                                     ACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTA                                                       >  SRR4302540.7831035/1‑94 (MQ=60)

                                      CCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAA                                                      >  SRR4302540.3213864/1‑94 (MQ=60)

                                       CAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAAT                                                     <  SRR4302540.2300455/94‑1 (MQ=60)

                                       CAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAAT                                                     >  SRR4302540.954511/1‑94 (MQ=60)

                                       CAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAAT                                                     >  SRR4302540.3386033/1‑94 (MQ=60)

                                         GCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATAC                                                   <  SRR4302540.9156660/94‑1 (MQ=60)

                                         GCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATAC                                                   <  SRR4302540.3800221/94‑1 (MQ=60)

                                         GCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATAC                                                   <  SRR4302540.9461403/94‑1 (MQ=60)

                                         GCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATAC                                                   >  SRR4302540.4555492/1‑94 (MQ=60)

                                          CACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACC                                                  <  SRR4302540.8041896/94‑1 (MQ=60)

                                          CACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACC                                                  >  SRR4302540.8708630/1‑94 (MQ=60)

                                          CACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGCAATACC                                                  >  SRR4302540.4712857/1‑94 (MQ=60)

                                           ACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCC                                                 >  SRR4302540.552617/1‑94 (MQ=60)

                                           ACGCGAGGATTATTAAATATCTGTATGGATTCACGGCCCGGCGTAAGGGCCACCAGCCCAACCTCAGGCACCAGAACAGGTCTAAGTAATACCC                                                 <  SRR4302540.2763231/94‑1 (MQ=60)

                                             TCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGC                                               >  SRR4302540.2695259/1‑94 (MQ=60)

                                              CGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCA                                              <  SRR4302540.3037211/94‑1 (MQ=60)

                                              CGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCA                                              >  SRR4302540.3939009/1‑94 (MQ=60)

                                               GAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGTCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCAC                                             <  SRR4302540.7711978/94‑1 (MQ=60)

                                               GAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCAC                                             <  SRR4302540.5326266/94‑1 (MQ=60)

                                               GAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCAC                                             <  SRR4302540.644792/94‑1 (MQ=60)

                                                AGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACG                                            <  SRR4302540.5561479/94‑1 (MQ=60)

                                                AGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACG                                            <  SRR4302540.5772495/94‑1 (MQ=60)

                                                AGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACG                                            >  SRR4302540.1557013/1‑94 (MQ=60)

                                                 GGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGT                                           >  SRR4302540.683240/1‑94 (MQ=60)

                                                  GATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTT                                          >  SRR4302540.249214/1‑94 (MQ=60)

                                                   ATTATGAAATATCTGTATGGATTTACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTA                                         <  SRR4302540.6234688/94‑1 (MQ=60)

                                                   ATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTA                                         <  SRR4302540.3849122/94‑1 (MQ=60)

                                                   ATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTA                                         >  SRR4302540.7649826/1‑94 (MQ=60)

                                                    TTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTAC                                        >  SRR4302540.6498699/1‑94 (MQ=60)

                                                    TTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTAC                                        <  SRR4302540.9311566/94‑1 (MQ=60)

                                                    TTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTAC                                        >  SRR4302540.8631783/1‑94 (MQ=60)

                                                    TTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTAC                                        <  SRR4302540.9311565/94‑1 (MQ=60)

                                                    TTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTAC                                        <  SRR4302540.8192794/94‑1 (MQ=60)

                                                     TATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACC                                       <  SRR4302540.2782608/94‑1 (MQ=60)

                                                     TATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACC                                       <  SRR4302540.3265192/94‑1 (MQ=60)

                                                      ATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCT                                      <  SRR4302540.118275/94‑1 (MQ=60)

                                                      ATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCT                                      >  SRR4302540.1573415/1‑94 (MQ=60)

                                                        GAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCC                                    >  SRR4302540.383364/1‑94 (MQ=60)

                                                         AAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCA                                   <  SRR4302540.3611433/94‑1 (MQ=60)

                                                            TATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGAT                                <  SRR4302540.3131301/94‑1 (MQ=60)

                                                            TATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGAT                                >  SRR4302540.792452/1‑94 (MQ=60)

                                                             ATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCCCCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGCTC                               >  SRR4302540.5729788/1‑94 (MQ=60)

                                                             ATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATC                               >  SRR4302540.5729789/1‑94 (MQ=60)

                                                             ATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATC                               <  SRR4302540.5799630/94‑1 (MQ=60)

                                                             ATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATC                               <  SRR4302540.9977500/94‑1 (MQ=60)

                                                               CTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCG                             >  SRR4302540.3537431/1‑94 (MQ=60)

                                                                TGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGT                            >  SRR4302540.3158569/1‑94 (MQ=60)

                                                                TGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGT                            >  SRR4302540.6260299/1‑94 (MQ=60)

                                                                 GTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTT                           <  SRR4302540.8974802/94‑1 (MQ=60)

                                                                  TATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATGCGTTG                          >  SRR4302540.27954/1‑94 (MQ=60)

                                                                  TATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTG                          <  SRR4302540.3885198/94‑1 (MQ=60)

                                                                  TATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTG                          >  SRR4302540.1973665/1‑94 (MQ=60)

                                                                   ATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGC                         <  SRR4302540.1060843/94‑1 (MQ=60)

                                                                     GGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTG                       <  SRR4302540.7359720/94‑1 (MQ=60)

                                                                     GGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTG                       >  SRR4302540.42228/1‑94 (MQ=60)

                                                                      GATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGG                      <  SRR4302540.2197541/94‑1 (MQ=60)

                                                                      GATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGG                      >  SRR4302540.6433751/1‑94 (MQ=60)

                                                                      GATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGG                      <  SRR4302540.3060523/94‑1 (MQ=60)

                                                                        TTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAA                    >  SRR4302540.4167662/1‑94 (MQ=60)

                                                                        TTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAA                    >  SRR4302540.4167663/1‑94 (MQ=60)

                                                                          CACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAG                  <  SRR4302540.3849592/94‑1 (MQ=60)

                                                                          CACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAG                  >  SRR4302540.5918188/1‑94 (MQ=60)

                                                                           CCGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGT                 <  SRR4302540.3312529/94‑1 (MQ=60)

                                                                            CGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTG                <  SRR4302540.10151186/94‑1 (MQ=60)

                                                                            CGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTG                <  SRR4302540.7481/94‑1 (MQ=60)

                                                                            CGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTG                >  SRR4302540.7010265/1‑94 (MQ=60)

                                                                             GGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGC               >  SRR4302540.4099075/1‑94 (MQ=60)

                                                                             CGCCCGGCTTAAGGGCCACCAGCNCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGC               <  SRR4302540.2119483/94‑1 (MQ=60)

                                                                              GCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCG              <  SRR4302540.6455655/94‑1 (MQ=60)

                                                                              GCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCG              <  SRR4302540.6020986/94‑1 (MQ=60)

                                                                                CCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGG            <  SRR4302540.8556924/94‑1 (MQ=60)

                                                                                  GGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGAC          <  SRR4302540.5130163/94‑1 (MQ=60)

                                                                                   GCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACG         <  SRR4302540.8990719/94‑1 (MQ=60)

                                                                                   GCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACG         >  SRR4302540.7535642/1‑94 (MQ=60)

                                                                                       AAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCACG     >  SRR4302540.6180135/1‑94 (MQ=60)

                                                                                         GGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCACGTG   <  SRR4302540.6974937/94‑1 (MQ=60)

                                                                                          GGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCACGTGG  <  SRR4302540.2940489/94‑1 (MQ=60)

GGATGGCAGATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGACCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCACGTGG  >  NC_000913/1642188‑1642371

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`