Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,650,355	T→C	F274L (TTC→CTC)	b1579 →	putative transposase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,650,355	0	T	C	100.0%	1206.6 / NA	363	F274L (TTC→CTC)	b1579	putative transposase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (186/177); total (186/177)

Only 100 of 368 total aligned reads displayed.

GTCATTCATCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCAT  >  NC_000913/1650265‑1650444

gTCATTCATCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTc                                                                                         >  1:9673294/1‑93 (MQ=255)

 tcattcatCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCa                                                                                        <  2:6349656/93‑1 (MQ=255)

  cattcatCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCag                                                                                       >  2:6722534/1‑93 (MQ=255)

  cattcatCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCag                                                                                       >  2:6942565/1‑93 (MQ=255)

    ttcatCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCagag                                                                                     >  1:786934/1‑93 (MQ=255)

    ttcatCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCagag                                                                                     >  1:3550367/1‑93 (MQ=255)

     tcatCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCagaga                                                                                    >  1:1135917/1‑93 (MQ=255)

      tatCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCagagag                                                                                   <  1:1732567/92‑1 (MQ=255)

      catCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCagagag                                                                                   <  1:2760683/93‑1 (MQ=255)

      catCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCagagag                                                                                   <  2:1672917/93‑1 (MQ=255)

      catCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCagagag                                                                                   >  2:1379803/1‑93 (MQ=255)

        tCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGGTGTTCACCTCAGAGAGTa                                                                                 <  2:8033946/93‑1 (MQ=255)

         cTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTAt                                                                                <  2:4387829/93‑1 (MQ=255)

         cTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTAt                                                                                <  1:2005237/93‑1 (MQ=255)

         cTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTAt                                                                                <  2:9122073/93‑1 (MQ=255)

          ttattaAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATg                                                                               <  1:9172904/93‑1 (MQ=255)

           tattaAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATgg                                                                              <  1:2694610/93‑1 (MQ=255)

             ttaAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGca                                                                            >  1:2146349/1‑93 (MQ=255)

              taAGCCAGCAATCGACGATCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGcag                                                                           <  1:6610578/93‑1 (MQ=255)

                 gCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGcagaac                                                                        <  2:8456106/93‑1 (MQ=255)

                   cAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGcagaacag                                                                      <  1:7144726/93‑1 (MQ=255)

                   cAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGcagaacag                                                                      <  2:8220133/93‑1 (MQ=255)

                    aGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGcagaacaga                                                                     <  1:6401243/93‑1 (MQ=255)

                       aaTCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGaaaa                                                                  >  2:2696797/1‑93 (MQ=255)

                        aTCGGCGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGaaaaa                                                                 <  2:4067421/93‑1 (MQ=255)

                        aTCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGaaaaa                                                                 <  2:3865117/93‑1 (MQ=255)

                         tCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGaaaaaa                                                                >  2:4768329/1‑92 (MQ=255)

                         tCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAAc                                                                >  2:8621659/1‑93 (MQ=255)

                         tCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAAc                                                                >  2:9400416/1‑93 (MQ=255)

                          cGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACa                                                               <  1:5068882/93‑1 (MQ=255)

                            aCGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACaaa                                                             <  1:5348477/93‑1 (MQ=255)

                            aCGCTCTCCGGAGTCAAATGACATTAACGAGACCTAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGGATGGCAGAACAGGAAAACcaa                                                             >  2:335952/1‑93 (MQ=255)

                               ctctCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAAt                                                          >  2:7658312/1‑93 (MQ=255)

                               ctctCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAAt                                                          <  1:3919853/93‑1 (MQ=255)

                                tctcCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATg                                                         <  1:9411372/93‑1 (MQ=255)

                                  tcCGGAGTCAGATGACATTAGCGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCa                                                       <  2:7010072/93‑1 (MQ=255)

                                  tcCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCa                                                       <  1:4662122/93‑1 (MQ=255)

                                   ccGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCAc                                                      >  2:7197349/1‑93 (MQ=255)

                                    cGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCAcc                                                     >  2:31523/1‑93 (MQ=255)

                                     ggAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCt                                                    <  1:776733/93‑1 (MQ=255)

                                      gAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCtt                                                   <  2:1154875/93‑1 (MQ=255)

                                      gAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCtt                                                   <  2:5343239/93‑1 (MQ=255)

                                        gTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTg                                                 >  2:307767/1‑93 (MQ=255)

                                        gTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTg                                                 <  1:5149240/93‑1 (MQ=255)

                                         tCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGt                                                <  2:1743980/93‑1 (MQ=255)

                                          cAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGtt                                               <  1:8685616/93‑1 (MQ=255)

                                            gATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGtttt                                             <  1:10008813/93‑1 (MQ=255)

                                             aTGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAA‑AGAAAAAAAAAAAAGCACCTTTGttttta                                           >  1:3502904/1‑92 (MQ=255)

                                              tGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTc                                           >  2:3633808/1‑93 (MQ=255)

                                              tGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTc                                           >  2:8843348/1‑93 (MQ=255)

                                               gACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCa                                          >  2:5114344/1‑93 (MQ=255)

                                                aCATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCaa                                         >  2:1328750/1‑93 (MQ=255)

                                                 cATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAAc                                        <  1:2684571/93‑1 (MQ=255)

                                                  aTTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAAcc                                       <  1:4165094/93‑1 (MQ=255)

                                                   ttAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCt                                      >  1:9362401/1‑93 (MQ=255)

                                                   ttAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCt                                      >  1:2950892/1‑93 (MQ=255)

                                                    tAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTg                                     <  1:3270985/93‑1 (MQ=255)

                                                    tAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTg                                     <  1:8522002/93‑1 (MQ=255)

                                                      aCGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGaa                                   >  1:9519715/1‑93 (MQ=255)

                                                       cGAGACTGAGCAAAGAGCATATCATTGATGTTCTCCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAg                                  <  2:5873211/93‑1 (MQ=255)

                                                       cGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAg                                  <  2:2306572/93‑1 (MQ=255)

                                                        gagaCTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAgt                                 >  2:7967572/1‑93 (MQ=255)

                                                        gagaCTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAgt                                 >  2:1891590/1‑93 (MQ=255)

                                                           aCTGAGCAAAGAGCATATCATTGATGTTCCCCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTc                              <  2:1451222/93‑1 (MQ=255)

                                                           aCTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTc                              >  1:8064194/1‑93 (MQ=255)

                                                             tGANCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAg                            <  2:2401033/93‑1 (MQ=255)

                                                             tGAGCAAAGAGCATATCTTTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAg                            <  2:5504742/93‑1 (MQ=255)

                                                             tGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGCGGATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAATCTGAAGTGTCAg                            >  2:4290824/1‑93 (MQ=255)

                                                             tGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAGCCTGAAGTGTCAg                            <  1:4340463/93‑1 (MQ=255)

                                                             tGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGGTTTTCAACCTGAAGTGTCAg                            >  2:7491800/1‑93 (MQ=255)

                                                              gAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGc                           <  2:6163237/93‑1 (MQ=255)

                                                               aGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCg                          <  2:8952126/93‑1 (MQ=255)

                                                                gCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCga                         <  1:2464814/93‑1 (MQ=255)

                                                                 cAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCgag                        <  1:3710170/93‑1 (MQ=255)

                                                                   aaGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGagag                      <  2:4499781/93‑1 (MQ=255)

                                                                   aaGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGagag                      >  2:5729491/1‑93 (MQ=255)

                                                                   aaGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGagag                      <  1:9239835/93‑1 (MQ=255)

                                                                   aaGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGagag                      >  2:7097674/1‑93 (MQ=255)

                                                                   aaGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGagag                      >  2:7353365/1‑93 (MQ=255)

                                                                    agagCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGt                     <  1:989641/93‑1 (MQ=255)

                                                                     gagCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTa                    <  2:7807018/93‑1 (MQ=255)

                                                                       gCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTaaa                  >  1:4121554/1‑93 (MQ=255)

                                                                         atatCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTaaaaa                >  1:4034060/1‑93 (MQ=255)

                                                                          tatCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTaaaaaa               >  1:8304423/1‑93 (MQ=255)

                                                                           atCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAAt              <  2:1119484/93‑1 (MQ=255)

                                                                            tCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAAtt             >  2:2553051/1‑93 (MQ=255)

                                                                             cATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTa            >  2:9645169/1‑93 (MQ=255)

                                                                             cATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTa            <  1:5471336/93‑1 (MQ=255)

                                                                               ttGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAACAATTATg          >  1:1625366/1‑93 (MQ=255)

                                                                               ttGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATg          >  1:1053949/1‑93 (MQ=255)

                                                                                ttaTGTTCACCTTAGAGAGTATGGCAGACCCGAAAACCAAAAGTGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATgg         <  1:6314580/91‑1 (MQ=255)

                                                                                tGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATgg         <  1:7398237/93‑1 (MQ=255)

                                                                                 gATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATggg        >  1:5740592/1‑92 (MQ=255)

                                                                                   tGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGa      <  2:2781128/93‑1 (MQ=255)

                                                                                   tGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGa      <  1:7501389/93‑1 (MQ=255)

                                                                                   tGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGa      <  1:3290853/93‑1 (MQ=255)

                                                                                    gTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGAc     >  1:8789264/1‑93 (MQ=255)

                                                                                    gTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGAc     >  1:5009688/1‑93 (MQ=255)

                                                                                     ttCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGAcc    <  1:589773/93‑1 (MQ=255)

                                                                                       cACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCAt  >  1:8595658/1‑93 (MQ=255)

GTCATTCATCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCAT  >  NC_000913/1650265‑1650444

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GGGTCATTCATCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCATTTTA  >  NC_000913/1650263‑1650448

GGGTCATTCATCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCT                                                                                              <  SRR4302540.4291851/94‑1 (MQ=60)

 GGTCATTCATCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTC                                                                                             >  SRR4302540.9787119/1‑94 (MQ=60)

  GTCATTCATCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCA                                                                                            <  SRR4302540.8422380/94‑1 (MQ=60)

   TCATTCATCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAG                                                                                           >  SRR4302540.1749002/1‑94 (MQ=60)

     ATTCATCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAG                                                                                         >  SRR4302540.3589157/1‑94 (MQ=60)

     ATTCATCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAG                                                                                         >  SRR4302540.8837233/1‑94 (MQ=60)

     ATTCATCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAG                                                                                         >  SRR4302540.6431795/1‑94 (MQ=60)

     ATTCATCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAG                                                                                         >  SRR4302540.8837234/1‑94 (MQ=60)

     ATTCATCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAG                                                                                         <  SRR4302540.2786342/94‑1 (MQ=60)

     ATTCATCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAG                                                                                         >  SRR4302540.795300/1‑94 (MQ=60)

     ATTCATCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAG                                                                                         >  SRR4302540.7921406/1‑94 (MQ=60)

     ATTCATCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAG                                                                                         >  SRR4302540.9311458/1‑94 (MQ=60)

     ATTCATCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAG                                                                                         >  SRR4302540.5118338/1‑94 (MQ=60)

      TTCATCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGA                                                                                        >  SRR4302540.1147759/1‑94 (MQ=60)

       TCATCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAG                                                                                       <  SRR4302540.1820860/94‑1 (MQ=60)

        TATCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGT                                                                                      <  SRR4302540.1751267/94‑1 (MQ=60)

        CATCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGT                                                                                      <  SRR4302540.2790514/94‑1 (MQ=60)

         ATCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTA                                                                                     <  SRR4302540.915385/94‑1 (MQ=60)

           CTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATG                                                                                   >  SRR4302540.2892863/1‑94 (MQ=60)

           CTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATG                                                                                   <  SRR4302540.2026942/94‑1 (MQ=60)

           CTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATG                                                                                   >  SRR4302540.1138431/1‑94 (MQ=60)

           CTTATTAAGCCAGCAATCGACGCTCTCCGGAGCCAGATGACATTAACGAGCCTGACAAACGAGCATATCATTGATGTTAACATCAGAGAATATG                                                                                   >  SRR4302540.2892861/1‑94 (MQ=60)

            TTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGG                                                                                  <  SRR4302540.4152635/94‑1 (MQ=60)

            TTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGG                                                                                  <  SRR4302540.3971032/94‑1 (MQ=60)

            TTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGG                                                                                  <  SRR4302540.2984857/94‑1 (MQ=60)

            TTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGG                                                                                  <  SRR4302540.9282938/94‑1 (MQ=60)

             TATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGC                                                                                 <  SRR4302540.2723701/94‑1 (MQ=60)

             TATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGC                                                                                 <  SRR4302540.6229475/94‑1 (MQ=60)

              ATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCA                                                                                >  SRR4302540.2169422/1‑94 (MQ=60)

              ATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCA                                                                                <  SRR4302540.3550682/94‑1 (MQ=60)

               TTAAGCCAGCAATCGGCGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAG                                                                               <  SRR4302540.3565398/94‑1 (MQ=60)

                TAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGA                                                                              <  SRR4302540.1492141/94‑1 (MQ=60)

                TAAGCCAGCAATCGACGATCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGA                                                                              <  SRR4302540.6683771/94‑1 (MQ=60)

                 AAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAA                                                                             >  SRR4302540.8743952/1‑94 (MQ=60)

                 AAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAA                                                                             >  SRR4302540.7655181/1‑94 (MQ=60)

                 AAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAA                                                                             >  SRR4302540.8743954/1‑94 (MQ=60)

                 AAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAA                                                                             >  SRR4302540.8743953/1‑94 (MQ=60)

                 AAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAA                                                                             <  SRR4302540.4578147/94‑1 (MQ=60)

                  AGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAAC                                                                            >  SRR4302540.4003915/1‑94 (MQ=60)

                   GCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACA                                                                           <  SRR4302540.4608684/94‑1 (MQ=60)

                    CCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAG                                                                          <  SRR4302540.4374375/94‑1 (MQ=60)

                    CCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAA                                                                          >  SRR4302540.5476880/1‑94 (MQ=60)

                     CAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGA                                                                         <  SRR4302540.864967/94‑1 (MQ=60)

                     CAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGA                                                                         <  SRR4302540.9705082/94‑1 (MQ=60)

                     CAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGA                                                                         <  SRR4302540.7224335/94‑1 (MQ=60)

                     CAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGA                                                                         <  SRR4302540.7508219/94‑1 (MQ=60)

                      AGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAA                                                                        <  SRR4302540.6472492/94‑1 (MQ=60)

                      AGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAA                                                                        >  SRR4302540.8021946/1‑94 (MQ=60)

                      AGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAA                                                                        >  SRR4302540.1114460/1‑94 (MQ=60)

                      AGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAA                                                                        <  SRR4302540.336583/94‑1 (MQ=60)

                       GCAATCGACGCGCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAA                                                                       <  SRR4302540.10003456/94‑1 (MQ=60)

                        CAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAA                                                                      >  SRR4302540.5783108/1‑94 (MQ=60)

                        CAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAA                                                                      >  SRR4302540.6663255/1‑94 (MQ=60)

                        CAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAA                                                                      <  SRR4302540.8644114/94‑1 (MQ=60)

                        CAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAA                                                                      <  SRR4302540.2764767/94‑1 (MQ=60)

                         AATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAA                                                                     >  SRR4302540.2221413/1‑94 (MQ=60)

                         AATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGAATAGCAGAACAGAAAAA                                                                     >  SRR4302540.8021410/1‑94 (MQ=60)

                          ATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAAC                                                                    >  SRR4302540.9984926/1‑94 (MQ=60)

                          ATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAAC                                                                    >  SRR4302540.6466588/1‑94 (MQ=60)

                           TCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACA                                                                   <  SRR4302540.3804297/94‑1 (MQ=60)

                            CGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGACAAAAAA                                                                  >  SRR4302540.514911/1‑94 (MQ=60)

                            CGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAA                                                                  <  SRR4302540.5123687/94‑1 (MQ=60)

                            CGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAA                                                                  >  SRR4302540.9472442/1‑94 (MQ=60)

                             GACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAA                                                                 >  SRR4302540.8442119/1‑94 (MQ=60)

                             GACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAA                                                                 >  SRR4302540.6359929/1‑94 (MQ=60)

                              ACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAA                                                                >  SRR4302540.4288179/1‑94 (MQ=60)

                              ACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAA                                                                <  SRR4302540.5407161/94‑1 (MQ=60)

                              ACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAA                                                                <  SRR4302540.2103092/94‑1 (MQ=60)

                              ACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAA                                                                <  SRR4302540.8577049/94‑1 (MQ=60)

                               CGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAA                                                               <  SRR4302540.965581/94‑1 (MQ=60)

                               CGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAA                                                               <  SRR4302540.2413951/94‑1 (MQ=60)

                                GCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAAT                                                              <  SRR4302540.9497224/94‑1 (MQ=60)

                                GCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAAT                                                              <  SRR4302540.3647529/94‑1 (MQ=60)

                                GCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAAT                                                              <  SRR4302540.5104528/94‑1 (MQ=60)

                                GCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAAT                                                              <  SRR4302540.7566772/94‑1 (MQ=60)

                                 CTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATG                                                             <  SRR4302540.3962283/94‑1 (MQ=60)

                                 CTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATG                                                             <  SRR4302540.3854329/94‑1 (MQ=60)

                                  TCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGC                                                            <  SRR4302540.9523272/94‑1 (MQ=60)

                                   CTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCA                                                           >  SRR4302540.9760418/1‑94 (MQ=60)

                                    TCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCAC                                                          <  SRR4302540.4712028/94‑1 (MQ=60)

                                      CGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCT                                                        <  SRR4302540.9392041/94‑1 (MQ=60)

                                      CGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCT                                                        <  SRR4302540.8872489/94‑1 (MQ=60)

                                       GGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTT                                                       >  SRR4302540.5444604/1‑94 (MQ=60)

                                       GGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTT                                                       <  SRR4302540.784983/94‑1 (MQ=60)

                                       GGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTT                                                       >  SRR4302540.415295/1‑94 (MQ=60)

                                        GAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTT                                                      <  SRR4302540.6429199/94‑1 (MQ=60)

                                         AGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTG                                                     >  SRR4302540.9338840/1‑94 (MQ=60)

                                         AGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTG                                                     >  SRR4302540.4871268/1‑94 (MQ=60)

                                          GTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGT                                                    <  SRR4302540.5205069/94‑1 (MQ=60)

                                            CAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTT                                                  <  SRR4302540.9286582/94‑1 (MQ=60)

                                            CAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTT                                                  <  SRR4302540.8786469/94‑1 (MQ=60)

                                            CAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTT                                                  <  SRR4302540.7654809/94‑1 (MQ=60)

                                            CAGATGACATGAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTT                                                  <  SRR4302540.833743/94‑1 (MQ=60)

                                              GATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTT                                                >  SRR4302540.1026220/1‑94 (MQ=60)

                                              GATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTT                                                <  SRR4302540.10125366/94‑1 (MQ=60)

                                              GATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAA‑AGAAAAAAAAAAAAGCACCTTTGTTTTTA                                               >  SRR4302540.3541059/1‑94 (MQ=60)

                                                 GACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAA                                             >  SRR4302540.5465974/1‑94 (MQ=60)

                                                 GACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAA                                             >  SRR4302540.2554319/1‑94 (MQ=60)

                                                 GACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAA                                             <  SRR4302540.9547542/94‑1 (MQ=60)

                                                 AACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAA                                             <  SRR4302540.9539398/94‑1 (MQ=60)

                                                  ACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAAC                                            <  SRR4302540.5273666/94‑1 (MQ=60)

                                                  ACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAAC                                            >  SRR4302540.5092674/1‑94 (MQ=60)

                                                   CATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACC                                           <  SRR4302540.4014387/94‑1 (MQ=60)

                                                   CATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACC                                           <  SRR4302540.2713596/94‑1 (MQ=60)

                                                    ATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCT                                          <  SRR4302540.4210243/94‑1 (MQ=60)

                                                    ATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCT                                          >  SRR4302540.9473891/1‑94 (MQ=60)

                                                    ATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCT                                          >  SRR4302540.9473893/1‑94 (MQ=60)

                                                    ATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCT                                          >  SRR4302540.4964556/1‑94 (MQ=60)

                                                    ATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCT                                          >  SRR4302540.2983379/1‑94 (MQ=60)

                                                     TTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTG                                         >  SRR4302540.1221868/1‑94 (MQ=60)

                                                     TTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTG                                         <  SRR4302540.7263476/94‑1 (MQ=60)

                                                     TTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTG                                         >  SRR4302540.5725274/1‑94 (MQ=60)

                                                     TTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTG                                         <  SRR4302540.7901387/94‑1 (MQ=60)

                                                      TAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGA                                        <  SRR4302540.8621033/94‑1 (MQ=60)

                                                      TAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGA                                        <  SRR4302540.3306690/94‑1 (MQ=60)

                                                      TAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGA                                        >  SRR4302540.2535090/1‑94 (MQ=60)

                                                       AACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAA                                       <  SRR4302540.2019597/94‑1 (MQ=60)

                                                       AACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAA                                       >  SRR4302540.9632452/1‑94 (MQ=60)

                                                       AACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAA                                       <  SRR4302540.5304758/94‑1 (MQ=60)

                                                        ACGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAG                                      <  SRR4302540.5631919/94‑1 (MQ=60)

                                                         CGAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGT                                     <  SRR4302540.3203060/94‑1 (MQ=60)

                                                          GAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAATAAAAATGCACCTTTGTTTTTCAACCTGAAGTG                                    <  SRR4302540.5158464/94‑1 (MQ=60)

                                                          GAGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTG                                    >  SRR4302540.59768/1‑94 (MQ=60)

                                                           AGACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGT                                   >  SRR4302540.3296852/1‑94 (MQ=60)

                                                            GACTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTC                                  >  SRR4302540.8157785/1‑94 (MQ=60)

                                                             GCTGAGCAAAGAGCATTTCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCTCCTTTGTTTTTCAACCTGAAGTGTCA                                 <  SRR4302540.109979/94‑1 (MQ=60)

                                                              CTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAG                                <  SRR4302540.419341/94‑1 (MQ=60)

                                                              CTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAG                                >  SRR4302540.1792070/1‑94 (MQ=60)

                                                              CTGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAG                                >  SRR4302540.2720996/1‑94 (MQ=60)

                                                               TGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACCAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGC                               >  SRR4302540.1305852/1‑94 (MQ=60)

                                                               TGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAGCCTGAAGTGTCAGC                               <  SRR4302540.4387714/94‑1 (MQ=60)

                                                               TGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGC                               <  SRR4302540.666266/94‑1 (MQ=60)

                                                               TGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGC                               >  SRR4302540.7933839/1‑94 (MQ=60)

                                                               TGAGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGC                               <  SRR4302540.5135485/94‑1 (MQ=60)

                                                                 AGCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGA                             >  SRR4302540.334046/1‑94 (MQ=60)

                                                                  GCAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAG                            <  SRR4302540.2491345/94‑1 (MQ=60)

                                                                   CAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGA                           <  SRR4302540.728387/94‑1 (MQ=60)

                                                                   CAAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGA                           <  SRR4302540.3750662/94‑1 (MQ=60)

                                                                    AAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAG                          <  SRR4302540.10007652/94‑1 (MQ=60)

                                                                    AAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAG                          <  SRR4302540.10140554/94‑1 (MQ=60)

                                                                    AAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAG                          >  SRR4302540.2100554/1‑94 (MQ=60)

                                                                    AAAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAG                          >  SRR4302540.7225530/1‑94 (MQ=60)

                                                                     AAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGT                         <  SRR4302540.9350516/94‑1 (MQ=60)

                                                                     AAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGT                         <  SRR4302540.3677876/94‑1 (MQ=60)

                                                                     AAGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGA                         >  SRR4302540.8298458/1‑94 (MQ=60)

                                                                      AGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTA                        <  SRR4302540.999744/94‑1 (MQ=60)

                                                                      AGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTA                        >  SRR4302540.8311149/1‑94 (MQ=60)

                                                                      AGAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTA                        >  SRR4302540.475165/1‑94 (MQ=60)

                                                                       GAGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAA                       >  SRR4302540.9525518/1‑94 (MQ=60)

                                                                        AGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAA                      >  SRR4302540.9238663/1‑94 (MQ=60)

                                                                        AGCATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAA                      >  SRR4302540.4166058/1‑94 (MQ=60)

                                                                          CATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAA                    >  SRR4302540.4077560/1‑94 (MQ=60)

                                                                           ATATCATTGTTGGTCGCCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAA                   <  SRR4302540.7182547/94‑1 (MQ=60)

                                                                           ATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAA                   >  SRR4302540.3502292/1‑94 (MQ=60)

                                                                           ATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAA                   >  SRR4302540.264429/1‑94 (MQ=60)

                                                                           ATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAA                   <  SRR4302540.7182549/94‑1 (MQ=60)

                                                                           ATATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAA                   >  SRR4302540.8400855/1‑94 (MQ=60)

                                                                            TATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAAT                  <  SRR4302540.417010/94‑1 (MQ=60)

                                                                             ATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATT                 >  SRR4302540.7597201/1‑94 (MQ=60)

                                                                             ATCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATT                 >  SRR4302540.2905554/1‑94 (MQ=60)

                                                                              TCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTA                >  SRR4302540.587505/1‑94 (MQ=60)

                                                                              TCATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTA                >  SRR4302540.4222200/1‑94 (MQ=60)

                                                                               CATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTAT               <  SRR4302540.5531563/94‑1 (MQ=60)

                                                                                ATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAACAATTATG              >  SRR4302540.1643167/1‑94 (MQ=60)

                                                                                ATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATG              <  SRR4302540.5851134/94‑1 (MQ=60)

                                                                                ATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATG              >  SRR4302540.1643168/1‑94 (MQ=60)

                                                                                ATTGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATG              >  SRR4302540.1064678/1‑94 (MQ=60)

                                                                                  TTATGTTCACCTTAGAGAGTATGGCAGACCCGAAAACCAAAAGTGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGG            <  SRR4302540.6384901/94‑1 (MQ=60)

                                                                                  TGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGT            <  SRR4302540.7480661/94‑1 (MQ=60)

                                                                                  TGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGT            >  SRR4302540.6733288/1‑94 (MQ=60)

                                                                                  TGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGT            >  SRR4302540.3916974/1‑94 (MQ=60)

                                                                                  TGATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGG            >  SRR4302540.5803869/1‑94 (MQ=60)

                                                                                    ATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGGGAGTAAAAAATgatgtaga          >  SRR4302540.2716735/1‑86 (MQ=60)

                                                                                    ATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGA          >  SRR4302540.3542758/1‑94 (MQ=60)

                                                                                    ATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGA          >  SRR4302540.4179210/1‑94 (MQ=60)

                                                                                    ATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGA          >  SRR4302540.9454810/1‑94 (MQ=60)

                                                                                    ATGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGA          >  SRR4302540.331079/1‑94 (MQ=60)

                                                                                    ATGTTCACCTCAGAGAGTATGGCAGAAAAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGC          >  SRR4302540.2716740/1‑94 (MQ=60)

                                                                                     TGTTCACCTCAGAGTGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGAC         >  SRR4302540.211344/1‑94 (MQ=60)

                                                                                     TGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGAC         <  SRR4302540.7585211/94‑1 (MQ=60)

                                                                                     TGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGAC         >  SRR4302540.5063935/1‑94 (MQ=60)

                                                                                     TGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGAC         <  SRR4302540.3326856/94‑1 (MQ=60)

                                                                                     TGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGAC         <  SRR4302540.3326855/94‑1 (MQ=60)

                                                                                     TGTTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGAC         >  SRR4302540.8890959/1‑94 (MQ=60)

                                                                                       TTCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCA       <  SRR4302540.596129/94‑1 (MQ=60)

                                                                                        TCACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCAT      >  SRR4302540.8695576/1‑94 (MQ=60)

                                                                                         CACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCATT     >  SRR4302540.4822433/1‑94 (MQ=60)

                                                                                         CACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCATT     >  SRR4302540.7345571/1‑94 (MQ=60)

                                                                                          ACCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCATTT    >  SRR4302540.3380193/1‑94 (MQ=60)

                                                                                           CCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCATTTT   >  SRR4302540.9614022/1‑94 (MQ=60)

                                                                                           CCTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCATTTT   >  SRR4302540.3719022/1‑94 (MQ=60)

                                                                                            CTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCTCCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCATTTTA  <  SRR4302540.3696951/94‑1 (MQ=60)

                                                                                            CTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCATTTTA  >  SRR4302540.8855623/1‑94 (MQ=60)

                                                                                            CTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCATTTTA  <  SRR4302540.8594083/94‑1 (MQ=60)

                                                                                            CTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCATTTTA  >  SRR4302540.8540063/1‑94 (MQ=60)

                                                                                            CTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCATTTTA  >  SRR4302540.8540061/1‑94 (MQ=60)

GGGTCATTCATCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTAAAAAATTATGGTGACCATTTTA  >  NC_000913/1650263‑1650448

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`