Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,620,798 |
Δ1 bp |
intergenic (+255/+186) |
ydeF → / ← ydeH |
putative transport protein/hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,620,795 | 0 | C | . | 100.0%
| 880.9
/ NA
| 191 | intergenic (+252/+189) | ydeF/ydeH | putative transport protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (107/84); total (107/84) |
Only 100 of 216 total aligned reads displayed.
CTGGGAATAATTTTATTTTCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGAT > NC_000913/1620703‑1620883
|
cTGGGAATAATTTTATTTTCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGc > 1:2553498/1‑93 (MQ=255)
tGGGAATAATTTTATTTTCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGcc > 2:378708/1‑93 (MQ=255)
ataatTTTATTTTCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGcccttgt < 1:417384/93‑5 (MQ=255)
taatTTTATTTTCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGtt < 1:1789232/93‑1 (MQ=255)
taatTTTATTTTCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGtt > 2:694656/1‑93 (MQ=255)
tttattttCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAg > 2:4662193/1‑93 (MQ=255)
tttattttCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAg > 1:3651181/1‑93 (MQ=255)
ttattttCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGt < 2:4740077/93‑1 (MQ=255)
tattttCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGtt < 1:3229285/93‑1 (MQ=255)
attttCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTtg < 1:1506186/93‑1 (MQ=255)
ttttctggttttctggCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTtgt > 1:5320232/1‑93 (MQ=255)
tttctggttttctggCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTtgtg < 2:2669315/93‑1 (MQ=255)
ttctggttttctggCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTgtgt > 1:3366543/1‑93 (MQ=255)
tctggttttctggCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTa < 2:4057477/93‑1 (MQ=255)
tctggttttctggCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTa > 2:41826/1‑93 (MQ=255)
tctggttttctggCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTa > 1:357043/1‑93 (MQ=255)
tctggttttctggCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTa < 1:584325/93‑1 (MQ=255)
tctggttttctggCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTa > 2:2597765/1‑93 (MQ=255)
tctggttttctggCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTa > 2:2111491/1‑93 (MQ=255)
tggttttctggCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACa < 2:2209206/93‑1 (MQ=255)
ggttttctggCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACaa < 2:4157317/93‑1 (MQ=255)
ggttttctggCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACaa > 1:80715/1‑93 (MQ=255)
ggttttctggCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACaa < 2:1833329/93‑1 (MQ=255)
ttttctggCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAgg > 2:4992298/1‑93 (MQ=255)
ttttctggCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAgg < 2:4341232/93‑1 (MQ=255)
ttttctggCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAgg < 2:4607926/93‑1 (MQ=255)
ttttctggCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAgg > 1:4617239/1‑93 (MQ=255)
ttctggCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAgggg < 2:3736700/93‑1 (MQ=255)
tctggCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGc < 2:1197862/93‑1 (MQ=255)
ctggCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGcc < 1:5620038/93‑1 (MQ=255)
ctggCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGcc > 2:1627629/1‑93 (MQ=255)
ctggCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGcc < 1:1309220/93‑1 (MQ=255)
tggCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGccg > 2:4886304/1‑92 (MQ=255)
tggCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCt < 1:3420599/93‑1 (MQ=255)
ggCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTg > 2:1696196/1‑93 (MQ=255)
ggCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTg < 1:367725/93‑1 (MQ=255)
ccGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGAt > 1:1054799/1‑93 (MQ=255)
ccGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGAt < 1:1351680/93‑1 (MQ=255)
ccGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGGTGTGTACAAGGGGCCTGAt < 2:6116268/93‑1 (MQ=255)
cgcgTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGAtt > 1:315090/1‑93 (MQ=255)
gcgTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGAttt > 1:3796434/1‑93 (MQ=255)
cgTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGAtttt > 1:3060784/1‑93 (MQ=255)
ttCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGa < 1:579553/93‑1 (MQ=255)
ttCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGa < 2:6231923/93‑1 (MQ=255)
ttCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGa < 2:1493013/93‑1 (MQ=255)
tCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGAc > 2:1959047/1‑93 (MQ=255)
tCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGAc < 1:4959857/93‑1 (MQ=255)
cAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACg < 1:5468361/93‑1 (MQ=255)
cAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACg > 2:1906724/1‑93 (MQ=255)
aGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACgg < 1:4289565/93‑1 (MQ=255)
gCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGc < 1:3909503/93‑1 (MQ=255)
gCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGc > 2:4140875/1‑93 (MQ=255)
gCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGc < 1:2196405/93‑1 (MQ=255)
caAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCGaaa < 1:3213209/93‑1 (MQ=255)
aaaTGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACCAGGGCCCTGATTTTTATGACGGCGaaaa > 1:2716260/1‑93 (MQ=255)
aaTGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCGaaaaa > 1:2871321/1‑93 (MQ=255)
aTGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCGaaaaaa > 2:2516789/1‑93 (MQ=255)
tGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCGaaaaaaa < 1:5698147/93‑1 (MQ=255)
gggATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCGaaaaaaaa < 1:5164961/93‑1 (MQ=255)
gATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCGAAAAAAAAcc < 1:843710/93‑1 (MQ=255)
gATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCGAAAAAAAAcc > 2:656124/1‑93 (MQ=255)
gACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCGAAAAAAAACCGcc > 1:2262947/1‑93 (MQ=255)
cTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCGAAAAAAAACCGCCAg < 2:586567/93‑1 (MQ=255)
tAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCGAAAAAAAACCGCCAGt > 2:3321972/1‑93 (MQ=255)
aaTGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCGAAAAAAAACCGCCAGTa > 1:651154/1‑93 (MQ=255)
aTGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCGAAAAAAAACCGCCAGTaa > 1:960292/1‑93 (MQ=255)
tGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCGAAAAAAAACCGCCAGTaaa > 1:4556572/1‑93 (MQ=255)
cGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACcgg > 2:3120161/1‑93 (MQ=255)
ggAGATAATCCCTCACCTAACCGG‑CCTTTTTTACAGTTGTGTACAAGGGGCTTGATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACcggc < 1:5328294/93‑1 (MQ=255)
ggAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACcggc > 2:4126440/1‑93 (MQ=255)
gaTAATCCCTCCCCT‑ACCGGGCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGt < 2:446960/93‑1 (MQ=255)
gaTAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACACGGGGCCTGATTTTTATGACGGCGAAAAATAACCGCCAGTAAACcggcggg > 1:6166724/1‑92 (MQ=255)
gaTAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCGAAAAAAAATCGCCAGTAAACcggcggg > 2:5504369/1‑92 (MQ=255)
tAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGa > 1:583164/1‑93 (MQ=255)
aaTCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGaa < 1:2624338/93‑1 (MQ=255)
aaTCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGaa < 2:5057300/93‑1 (MQ=255)
aTCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACCGCGAAAAAAAACCGCCAGTAAAACGGCGGGGAAt > 2:3377571/1‑93 (MQ=255)
tCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATg > 1:5179474/1‑93 (MQ=255)
tCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATg > 1:1397084/1‑93 (MQ=255)
tCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATg > 2:2887929/1‑93 (MQ=255)
cccTCACCTACCCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCAAAAAAAAACCGCCAGTAAACCGGCGGTGAATGc < 2:2399395/93‑1 (MQ=255)
ccTCACCTACCCGG‑CCTTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCt < 2:3406747/93‑1 (MQ=255)
ccTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCt < 1:1824692/93‑1 (MQ=255)
cTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCtt < 2:5731286/93‑1 (MQ=255)
cccTACCCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCa < 1:3533263/92‑1 (MQ=255)
cccTAACCGG‑CCTTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCa < 1:123202/92‑1 (MQ=255)
cccTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCAAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCa < 2:6024873/92‑1 (MQ=255)
aCCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCGAAAAAACAACGCCAGTAAACCGGCGGTGAATGCTTGCa > 1:2021554/1‑93 (MQ=255)
aCCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCa > 1:2768087/1‑93 (MQ=255)
aCCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCa < 1:1696196/93‑1 (MQ=255)
ccTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCAt < 1:5974826/93‑1 (MQ=255)
cTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATg > 1:3965537/1‑93 (MQ=255)
tAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATgg > 1:5932004/1‑93 (MQ=255)
tAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATgg > 2:5290104/1‑93 (MQ=255)
aaCCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGTATGGa > 2:82883/1‑93 (MQ=255)
aaCCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGa > 2:2930060/1‑93 (MQ=255)
aaCCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGa < 1:2931179/93‑1 (MQ=255)
aCCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGAt > 2:1063876/1‑93 (MQ=255)
aCCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGAt > 1:4405038/1‑93 (MQ=255)
aCCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGAt < 1:2593771/93‑1 (MQ=255)
|
CTGGGAATAATTTTATTTTCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGAT > NC_000913/1620703‑1620883
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGAATAATTTTATTTTCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGT > NC_000913/1620706‑1620891
|
GGAATAATTTTATTTTCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCTT > SRR4302533.3156899/1‑94 (MQ=60)
GGAATAATTTTATTTTCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCTT > SRR4302533.5942948/1‑94 (MQ=60)
GGAATAATTTTATTTTCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCTT < SRR4302533.1915629/94‑1 (MQ=60)
AATAATTTTATTTTCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGT > SRR4302533.618902/1‑94 (MQ=60)
ATAATTTTATTTTCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTT < SRR4302533.419888/94‑1 (MQ=60)
TAATTTTATTTTCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTA < SRR4302533.1800113/94‑1 (MQ=60)
AATTTTATTTTCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTAC > SRR4302533.3520045/1‑94 (MQ=60)
ATTTTATTTTCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACA > SRR4302533.2795744/1‑94 (MQ=60)
TTTTATTTTCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAG > SRR4302533.3673629/1‑94 (MQ=60)
TTTATTTTCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTGATGTACGGAGATAATCCCTCACCTAGCCGG‑CCCTTTTTACAGT > SRR4302533.172377/1‑94 (MQ=60)
TTATTTTCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTT > SRR4302533.877580/1‑94 (MQ=60)
TATTTTCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTG < SRR4302533.3249195/94‑1 (MQ=60)
TATTTTCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTG > SRR4302533.2610197/1‑94 (MQ=60)
TTTTTCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGT < SRR4302533.1619231/94‑1 (MQ=60)
ATTTTCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGT < SRR4302533.3243715/94‑1 (MQ=60)
ATTTTCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGT < SRR4302533.1515268/94‑1 (MQ=60)
ATTTTCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGT > SRR4302533.5352118/1‑94 (MQ=60)
TTTTCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTG > SRR4302533.1279039/1‑94 (MQ=60)
TTTCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGT > SRR4302533.3387338/1‑94 (MQ=60)
TTCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTA > SRR4302533.359218/1‑94 (MQ=60)
TCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTAC < SRR4302533.5032985/94‑1 (MQ=60)
TCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTAC < SRR4302533.587771/94‑1 (MQ=60)
CTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACA < SRR4302533.348265/94‑1 (MQ=60)
TGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAA > SRR4302533.81229/1‑94 (MQ=60)
TGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAA > SRR4302533.641891/1‑94 (MQ=60)
GGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAG > SRR4302533.4005076/1‑94 (MQ=60)
GTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGG > SRR4302533.4645198/1‑94 (MQ=60)
TTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGG > SRR4302533.2889063/1‑94 (MQ=60)
TTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGG < SRR4302533.5727775/94‑1 (MQ=60)
TTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGC < SRR4302533.4636081/94‑1 (MQ=60)
CTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCT < SRR4302533.5654005/94‑1 (MQ=60)
CTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCT > SRR4302533.1330784/1‑94 (MQ=60)
CTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCT < SRR4302533.1317079/94‑1 (MQ=60)
CTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCT < SRR4302533.1743640/94‑1 (MQ=60)
CTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGATGTGTACAAGGGGCCT > SRR4302533.5136902/1‑94 (MQ=60)
CTGGCCGCGTATTTCAGCCACAAATGGGATAACTAATGAACGGAGATAATCCATCTCCTAACCGGGCCC‑TGTTACAGTTGTGTAgaagagaccg > SRR4302533.3887780/1‑84 (MQ=60)
TGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTG > SRR4302533.4424562/1‑94 (MQ=60)
TGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTG < SRR4302533.3441735/94‑1 (MQ=60)
GGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGA < SRR4302533.369949/94‑1 (MQ=60)
GCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGAT > SRR4302533.1810316/1‑94 (MQ=60)
GCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGAT > SRR4302533.1061006/1‑94 (MQ=60)
CCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATT < SRR4302533.3872178/94‑1 (MQ=60)
CCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATT > SRR4302533.2252327/1‑94 (MQ=60)
CCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATT < SRR4302533.1359809/94‑1 (MQ=60)
CCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATT > SRR4302533.317013/1‑94 (MQ=60)
CGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTT > SRR4302533.5868885/1‑94 (MQ=60)
CGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTT > SRR4302533.3819672/1‑94 (MQ=60)
GCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTT > SRR4302533.3079568/1‑94 (MQ=60)
CGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTT > SRR4302533.5282646/1‑94 (MQ=60)
TATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTAT < SRR4302533.2970797/94‑1 (MQ=60)
TTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGAC < SRR4302533.582967/94‑1 (MQ=60)
TCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACG < SRR4302533.4989904/94‑1 (MQ=60)
TCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACG < SRR4302533.397056/94‑1 (MQ=60)
TCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACG > SRR4302533.5980746/1‑94 (MQ=60)
CAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGG < SRR4302533.5501319/94‑1 (MQ=60)
CAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGG > SRR4302533.4124935/1‑94 (MQ=60)
AGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGC < SRR4302533.4315359/94‑1 (MQ=60)
GCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG < SRR4302533.3933381/94‑1 (MQ=60)
GCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG < SRR4302533.2209939/94‑1 (MQ=60)
ACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAA < SRR4302533.4258502/94‑1 (MQ=60)
CAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACCAGGGCCCTGATTTTTATGACGGCG‑AAAA > SRR4302533.2732937/1‑94 (MQ=60)
CAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAA < SRR4302533.3233013/94‑1 (MQ=60)
AAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAA > SRR4302533.2888987/1‑94 (MQ=60)
TGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAA < SRR4302533.5732565/94‑1 (MQ=60)
TGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAA < SRR4302533.668474/94‑1 (MQ=60)
GGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAAC < SRR4302533.5196152/94‑1 (MQ=60)
GGATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACC > SRR4302533.11502/1‑94 (MQ=60)
GATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCG < SRR4302533.848643/94‑1 (MQ=60)
ATGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGC > SRR4302533.2099428/1‑94 (MQ=60)
TGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCC > SRR4302533.997744/1‑94 (MQ=60)
TGACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCC > SRR4302533.2276945/1‑94 (MQ=60)
ACTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAG > SRR4302533.1504751/1‑94 (MQ=60)
CTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGT > SRR4302533.3186396/1‑94 (MQ=60)
CTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGT < SRR4302533.1381741/94‑1 (MQ=60)
CTAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGT < SRR4302533.2588034/94‑1 (MQ=60)
TAATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTA > SRR4302533.655003/1‑94 (MQ=60)
AATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAA > SRR4302533.965937/1‑94 (MQ=60)
ATGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAA > SRR4302533.4584206/1‑94 (MQ=60)
TGAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGACTGATTTTTATGACGGCG‑AAAAAAAACAGCCAGTAAAC > SRR4302533.5453087/1‑94 (MQ=60)
GAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACC < SRR4302533.5844363/94‑1 (MQ=60)
GAACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACC > SRR4302533.2769680/1‑94 (MQ=60)
ACGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGG > SRR4302533.2997801/1‑94 (MQ=60)
CGGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGTTTTTTATGACGGCA‑AAAAAAAACCGCCAGTAAACCGGC < SRR4302533.3768372/94‑1 (MQ=60)
GGAGATAATCCCTCACCTAACCGG‑CCTTTTTTACAGTTGTGTACAAGGGGCTTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCG < SRR4302533.5360226/94‑1 (MQ=60)
GGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCG > SRR4302533.4955349/1‑94 (MQ=60)
GGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCG > SRR4302533.2653616/1‑94 (MQ=60)
GGAGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCG < SRR4302533.5203218/94‑1 (MQ=60)
AGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACACGGGGCCTGATTTTTATGACGGCG‑AAAAATAACCGCCAGTAAACCGGCGGG > SRR4302533.6203785/1‑94 (MQ=60)
AGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGT > SRR4302533.3679427/1‑94 (MQ=60)
AGATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGT > SRR4302533.3402719/1‑94 (MQ=60)
ATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGA > SRR4302533.586604/1‑94 (MQ=60)
ATAATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGGGA > SRR4302533.3632010/1‑94 (MQ=60)
AATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAAT < SRR4302533.2640444/94‑1 (MQ=60)
ATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATG > SRR4302533.1405505/1‑94 (MQ=60)
ATCCCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATG > SRR4302533.5210753/1‑94 (MQ=60)
ATCCCCCCCCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGGCTGATTTTTATGACGGCGAAAAAAAAACCGCCAGTAAACCGGCGGTGAAT < SRR4302533.1070851/94‑1 (MQ=60)
CCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTT < SRR4302533.1835839/94‑1 (MQ=60)
CCTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTT < SRR4302533.334882/94‑1 (MQ=60)
CTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTG < SRR4302533.5664496/94‑1 (MQ=60)
CTCACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTG < SRR4302533.5357571/94‑1 (MQ=60)
CACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAACAACGCCAGTAAACCGGCGGTGAATGCTTGCA > SRR4302533.2034003/1‑94 (MQ=60)
CACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCA > SRR4302533.2379364/1‑94 (MQ=60)
CACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCA > SRR4302533.2785068/1‑94 (MQ=60)
CACCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCA > SRR4302533.3569425/1‑94 (MQ=60)
CCCTAACCGG‑CCTTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCAT < SRR4302533.123976/94‑1 (MQ=60)
CCCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCAT < SRR4302533.1706469/94‑1 (MQ=60)
ccctacccggCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCAT < SRR4302533.3555036/84‑1 (MQ=60)
CCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATG > SRR4302533.3989695/1‑94 (MQ=60)
CCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATG < SRR4302533.5515757/94‑1 (MQ=60)
CCTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATG < SRR4302533.6010992/94‑1 (MQ=60)
CTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGG > SRR4302533.4522757/1‑94 (MQ=60)
CTAACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGG > SRR4302533.5967865/1‑94 (MQ=60)
AACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGAT < SRR4302533.6013553/94‑1 (MQ=60)
AACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGAT < SRR4302533.2949106/94‑1 (MQ=60)
AACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGAT > SRR4302533.4431634/1‑94 (MQ=60)
ACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATA < SRR4302533.577237/94‑1 (MQ=60)
ACCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATA < SRR4302533.2609709/94‑1 (MQ=60)
ACCCGGCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGAT < SRR4302533.1649731/94‑1 (MQ=60)
ACCCGCCCCTTGTTACAGTTGTGAACAAGGGGCCTGATTTTTATGACGGCA‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGAT < SRR4302533.84760/94‑1 (MQ=60)
CCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAG < SRR4302533.2281364/94‑1 (MQ=60)
CCGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAG > SRR4302533.5251794/1‑94 (MQ=60)
CGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGA < SRR4302533.3003992/94‑1 (MQ=60)
CGG‑CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGA > SRR4302533.1687474/1‑94 (MQ=60)
GGCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGAT > SRR4302533.718294/1‑94 (MQ=60)
CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTT > SRR4302533.240228/1‑94 (MQ=60)
CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTT > SRR4302533.2276422/1‑94 (MQ=60)
CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTT < SRR4302533.30605/94‑1 (MQ=60)
CCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTT > SRR4302533.3608105/1‑94 (MQ=60)
CCTTGTTACAGTTGTGTACAAGGGGCTTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTG < SRR4302533.846238/94‑1 (MQ=60)
CCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTG < SRR4302533.4860431/94‑1 (MQ=60)
CCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTG > SRR4302533.2444054/1‑94 (MQ=60)
CCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTG > SRR4302533.2927187/1‑94 (MQ=60)
CCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTG < SRR4302533.5511231/94‑1 (MQ=60)
CTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGT > SRR4302533.3083256/1‑94 (MQ=60)
|
GGAATAATTTTATTTTCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCCTGATTTTTATGACGGCG‑AAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGT > NC_000913/1620706‑1620891
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
