Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,642,279 |
A→G |
V30A (GTC→GCC) |
b1560 ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,642,279 | 0 | A | G | 99.6%
| 719.2
/ NA
| 224 | V30A (GTC→GCC) | b1560 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (131/92); minor base T (0/1); total (131/93) |
| Fisher's exact test for biased strand distribution p-value = 4.15e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 236 total aligned reads displayed.
GATGGCAGATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGACCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCACG > NC_000913/1642189‑1642368
|
aTGGCAGATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGgcca < 2:3318153/93‑1 (MQ=255)
tGGCAGATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGgccac < 2:4087517/93‑1 (MQ=255)
tGGCAGATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGgccac < 1:6264945/93‑1 (MQ=255)
ggCAGATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGTATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGgccacc > 1:2268793/1‑93 (MQ=255)
gCAGATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGccacca > 1:1557331/1‑93 (MQ=255)
gCAGATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGccacca < 2:1859179/93‑1 (MQ=255)
gCAGATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGccacca > 1:3075581/1‑93 (MQ=255)
aGATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGc > 2:3688535/1‑93 (MQ=255)
gATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGcc < 1:5178668/93‑1 (MQ=255)
gATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGcc < 1:5515373/93‑1 (MQ=255)
aTTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGccc < 1:4039600/93‑1 (MQ=255)
aTTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGccc > 1:3753833/1‑93 (MQ=255)
ttACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCa > 1:3269695/1‑93 (MQ=255)
cGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGc < 1:6271628/93‑1 (MQ=255)
gCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCt > 1:4380797/1‑93 (MQ=255)
cATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTc > 1:5435763/1‑93 (MQ=255)
tttGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCAcc < 2:2951947/93‑1 (MQ=255)
ttGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCa < 1:264820/93‑1 (MQ=255)
ttGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCa > 1:539612/1‑93 (MQ=255)
ttGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCa < 2:5703893/93‑1 (MQ=255)
gttccggttccACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGaa > 2:3627364/1‑93 (MQ=255)
ccggttccACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAg < 2:5528211/93‑1 (MQ=255)
ggttccACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGt > 2:6178592/1‑93 (MQ=255)
gttccACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTc < 1:646711/93‑1 (MQ=255)
gttccACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTc > 1:3826621/1‑93 (MQ=255)
ttccACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCt < 2:3062480/93‑1 (MQ=255)
ttccACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCt < 1:1419093/93‑1 (MQ=255)
ccaccaGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTaa < 2:1440302/93‑1 (MQ=255)
ccaccaGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTaa > 1:1238049/1‑93 (MQ=255)
caccaGCATTCGAGGATTTTGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAg < 2:3299187/93‑1 (MQ=255)
caccaGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAg > 2:2144117/1‑93 (MQ=255)
caccaGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAg < 2:472947/93‑1 (MQ=255)
accaGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGt > 2:2360356/1‑93 (MQ=255)
accaGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGt > 2:2849196/1‑93 (MQ=255)
accaGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGt > 1:4920467/1‑93 (MQ=255)
ccaGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTa > 2:6020890/1‑93 (MQ=255)
ccaGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTa > 1:3644547/1‑93 (MQ=255)
caGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTaa < 1:3105954/93‑1 (MQ=255)
caGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTaa > 2:5608412/1‑93 (MQ=255)
caGCACTCGAGGATTATGAAATATCTGTATGGATGGACGGCCCGGCTTAAGGTCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTaa < 1:1352494/93‑1 (MQ=255)
gCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATa > 2:3140830/1‑93 (MQ=255)
gCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATa > 1:4315326/1‑93 (MQ=255)
cACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATAc > 1:5656474/1‑93 (MQ=255)
aCTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATAcc < 1:5151303/93‑1 (MQ=255)
aCTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATAcc < 1:4722467/93‑1 (MQ=255)
cTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATAccc < 1:405913/93‑1 (MQ=255)
cTCGAGGATGATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATAccc < 1:3930439/93‑1 (MQ=255)
tCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCg > 2:5222577/1‑93 (MQ=255)
cGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGc < 1:5993350/93‑1 (MQ=255)
gAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCa > 2:444272/1‑93 (MQ=255)
gAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCa > 2:2992898/1‑93 (MQ=255)
ggATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACg > 1:4140224/1‑93 (MQ=255)
ggATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACg > 2:2493084/1‑93 (MQ=255)
ttATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTa < 2:3871644/93‑1 (MQ=255)
tATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTAc > 1:19283/1‑93 (MQ=255)
tATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTAc > 2:5458425/1‑93 (MQ=255)
tATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTAc > 2:4811836/1‑93 (MQ=255)
tGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCt > 1:2961995/1‑93 (MQ=255)
tGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCt > 1:28447/1‑93 (MQ=255)
gAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTc < 1:1636447/93‑1 (MQ=255)
aaTATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCa > 2:778181/1‑93 (MQ=255)
atatCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAg > 1:982777/1‑93 (MQ=255)
tatCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGa < 2:1049541/93‑1 (MQ=255)
atCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGAt < 1:3130223/93‑1 (MQ=255)
atCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGAt > 1:5036856/1‑93 (MQ=255)
tCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCTGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATc < 1:4552762/93‑1 (MQ=255)
tGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCg > 1:2116856/1‑93 (MQ=255)
tGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTCCCTCCAGATCCGTTGc < 2:2130890/93‑1 (MQ=255)
tGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGc > 1:2701230/1‑93 (MQ=255)
ggATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCt > 1:588032/1‑93 (MQ=255)
ttCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGTCACCAGGACAGGTCTAAGCAATACCCGCTCGTTATCTCCAGATCCGTTGCTGGa > 2:2513143/1‑93 (MQ=255)
ttCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTgag > 1:6051964/1‑91 (MQ=255)
ttCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGa > 1:912340/1‑93 (MQ=255)
ttCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGa > 2:3592305/1‑93 (MQ=255)
tCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGaa > 1:4224749/1‑93 (MQ=255)
tCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGaa > 1:353565/1‑93 (MQ=255)
cACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGaaa < 1:1829811/93‑1 (MQ=255)
cACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGaaa < 2:1310540/93‑1 (MQ=255)
aCGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAg > 2:627036/1‑93 (MQ=255)
aCGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAg > 2:5697566/1‑93 (MQ=255)
cGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGt < 2:2096396/93‑1 (MQ=255)
cGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGt < 1:464198/93‑1 (MQ=255)
ggCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTg > 2:4005289/1‑93 (MQ=255)
ggCCCGGCTGAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTg < 2:1754897/93‑1 (MQ=255)
gCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGc < 2:5072488/93‑1 (MQ=255)
gCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGc > 2:4396076/1‑93 (MQ=255)
cccGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCg < 1:5344982/93‑1 (MQ=255)
cccGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCg < 1:1079874/93‑1 (MQ=255)
ccGGCTTAAGGGCCACCAGCCCAAGCTCAGGCGCCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCgg < 2:4722945/93‑1 (MQ=255)
cGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCggg > 1:3729432/1‑93 (MQ=255)
ggCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGa < 1:527981/93‑1 (MQ=255)
ggCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGa < 1:50305/93‑1 (MQ=255)
ggCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGa < 2:575304/93‑1 (MQ=255)
gCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGAc > 1:3797493/1‑93 (MQ=255)
cTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACg < 1:4237622/93‑1 (MQ=255)
ttAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGc > 2:2660364/1‑93 (MQ=255)
tAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCa > 2:5156771/1‑93 (MQ=255)
tAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCa < 2:1180500/93‑1 (MQ=255)
tAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCa > 1:3461042/1‑93 (MQ=255)
tAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAAGGCGGGACGCa > 2:3980960/1‑93 (MQ=255)
|
GATGGCAGATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGACCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCACG > NC_000913/1642189‑1642368
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCGGATGGCAGATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGACCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCACGTGGT > NC_000913/1642186‑1642372
|
CCGGATGGCAGATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGG > SRR4302533.4215539/1‑94 (MQ=60)
CCGGATGGCAGATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGG > SRR4302533.1367846/1‑94 (MQ=60)
CGGATGGCAGATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGC < SRR4302533.3709658/94‑1 (MQ=60)
CGGATGGCAGATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGC > SRR4302533.4658418/1‑94 (MQ=60)
GGATGGCAGATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCC > SRR4302533.4660497/1‑94 (MQ=60)
GGATGGCAGATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCC > SRR4302533.702857/1‑94 (MQ=60)
ATGGCAGATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCAC > SRR4302533.4301311/1‑94 (MQ=60)
ATGGCAGATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCAC > SRR4302533.381523/1‑94 (MQ=60)
TGGCAGCTTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTCTGGATTCACGGCCCGGCTTAAGGGCCACC < SRR4302533.305321/94‑1 (MQ=60)
TGGCAGATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGTATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACC > SRR4302533.2282830/1‑94 (MQ=60)
TGGCAGATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACC < SRR4302533.6302387/94‑1 (MQ=60)
GGCAGATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCA > SRR4302533.3094457/1‑94 (MQ=60)
GGCAGATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCA > SRR4302533.1566704/1‑94 (MQ=60)
GCAGATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAG < SRR4302533.2045581/94‑1 (MQ=60)
GCAGATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAG < SRR4302533.4181868/94‑1 (MQ=60)
GATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCC < SRR4302533.5548670/94‑1 (MQ=60)
GATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCC < SRR4302533.5209943/94‑1 (MQ=60)
GATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCC > SRR4302533.3776844/1‑94 (MQ=60)
ATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCA < SRR4302533.4064180/94‑1 (MQ=60)
ATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCA > SRR4302533.3289869/1‑94 (MQ=60)
TACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAG < SRR4302533.3714174/94‑1 (MQ=60)
ACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGC < SRR4302533.4261669/94‑1 (MQ=60)
CGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCT > SRR4302533.5189140/1‑94 (MQ=60)
CGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCT < SRR4302533.6309089/94‑1 (MQ=60)
CGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCT > SRR4302533.4407245/1‑94 (MQ=60)
CGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCT < SRR4302533.382770/94‑1 (MQ=60)
GTATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTC > SRR4302533.3254039/1‑94 (MQ=60)
GCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTC > SRR4302533.5468498/1‑94 (MQ=60)
GCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTC < SRR4302533.5617029/94‑1 (MQ=60)
TTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCA > SRR4302533.542822/1‑94 (MQ=60)
TTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCA > SRR4302533.542821/1‑94 (MQ=60)
TTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCA > SRR4302533.43114/1‑94 (MQ=60)
TTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAG < SRR4302533.266431/94‑1 (MQ=60)
GGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAA < SRR4302533.1799230/94‑1 (MQ=60)
GTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAAC < SRR4302533.47078/94‑1 (MQ=60)
TCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAG < SRR4302533.2738352/94‑1 (MQ=60)
GGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTC > SRR4302533.3850015/1‑94 (MQ=60)
GTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCT < SRR4302533.650521/94‑1 (MQ=60)
TTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTA < SRR4302533.1427680/94‑1 (MQ=60)
TTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTA > SRR4302533.6341918/1‑94 (MQ=60)
TCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAA > SRR4302533.1245445/1‑94 (MQ=60)
TCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAA > SRR4302533.2809803/1‑94 (MQ=60)
CCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAG > SRR4302533.1371032/1‑94 (MQ=60)
CCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAG < SRR4302533.2373327/94‑1 (MQ=60)
CCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAG > SRR4302533.6174974/1‑94 (MQ=60)
CACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTGAGGCACCAGAACAGGTCTAAGA > SRR4302533.6147650/1‑94 (MQ=60)
CACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGT > SRR4302533.4950273/1‑94 (MQ=60)
CACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGT < SRR4302533.5996639/94‑1 (MQ=60)
ACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTA < SRR4302533.3523799/94‑1 (MQ=60)
ACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTA > SRR4302533.3666957/1‑94 (MQ=60)
CAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAAT < SRR4302533.3125045/94‑1 (MQ=60)
CAGCACTCGAGGATTATGAAATATCTGTATGGATGGACGGCCCGGCTTAAGGTCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAAT < SRR4302533.1360628/94‑1 (MQ=60)
AGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATA > SRR4302533.4341310/1‑94 (MQ=60)
GCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATAC > SRR4302533.5690656/1‑94 (MQ=60)
CACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACC > SRR4302533.118663/1‑94 (MQ=60)
CACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACC > SRR4302533.5336837/1‑94 (MQ=60)
CACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACC > SRR4302533.3104787/1‑94 (MQ=60)
ACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCC < SRR4302533.5182420/94‑1 (MQ=60)
ACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCC < SRR4302533.4751098/94‑1 (MQ=60)
CTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCG < SRR4302533.3856645/94‑1 (MQ=60)
CTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCG < SRR4302533.1552994/94‑1 (MQ=60)
CTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCG < SRR4302533.408353/94‑1 (MQ=60)
CTCGAGGATGATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCG < SRR4302533.3954433/94‑1 (MQ=60)
CGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCA < SRR4302533.6029653/94‑1 (MQ=60)
CGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCA > SRR4302533.5362071/1‑94 (MQ=60)
GAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCAC > SRR4302533.4758579/1‑94 (MQ=60)
GAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCAC < SRR4302533.222068/94‑1 (MQ=60)
GAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCAC > SRR4302533.1385574/1‑94 (MQ=60)
AGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACG > SRR4302533.4403675/1‑94 (MQ=60)
AGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACG > SRR4302533.4165334/1‑94 (MQ=60)
GGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGT < SRR4302533.50657/94‑1 (MQ=60)
ATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGCACAGGTCTAAGTAATACCCGCACGTTA > SRR4302533.6051964/1‑94 (MQ=60)
TTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTAC > SRR4302533.4014636/1‑94 (MQ=60)
TTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTAC > SRR4302533.933348/1‑94 (MQ=60)
TTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTAC > SRR4302533.19412/1‑94 (MQ=60)
TATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGTGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACC < SRR4302533.4108940/94‑1 (MQ=60)
TATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACC < SRR4302533.5525851/94‑1 (MQ=60)
TATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACC < SRR4302533.5525850/94‑1 (MQ=60)
TATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACC > SRR4302533.3125714/1‑94 (MQ=60)
ATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCT > SRR4302533.28639/1‑94 (MQ=60)
ATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCT > SRR4302533.2980102/1‑94 (MQ=60)
ATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCT > SRR4302533.3046697/1‑94 (MQ=60)
ATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCT > SRR4302533.4068832/1‑94 (MQ=60)
ATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCT < SRR4302533.3773592/94‑1 (MQ=60)
TGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTC > SRR4302533.5222081/1‑94 (MQ=60)
GAAATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCC < SRR4302533.1646356/94‑1 (MQ=60)
AATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAG > SRR4302533.988536/1‑94 (MQ=60)
ATATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGA > SRR4302533.3571707/1‑94 (MQ=60)
TATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGAT < SRR4302533.5428014/94‑1 (MQ=60)
TATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGAT > SRR4302533.5067358/1‑94 (MQ=60)
ATCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATC < SRR4302533.3149470/94‑1 (MQ=60)
TCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCTGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCC < SRR4302533.4580372/94‑1 (MQ=60)
TCTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCC > SRR4302533.1589004/1‑94 (MQ=60)
CTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCG < SRR4302533.4950879/94‑1 (MQ=60)
CTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCG > SRR4302533.2129912/1‑94 (MQ=60)
CTGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCG < SRR4302533.3904208/94‑1 (MQ=60)
TGTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGT > SRR4302533.131133/1‑94 (MQ=60)
GTATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACTTCCAGATCCGTT > SRR4302533.4107012/1‑94 (MQ=60)
TATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTG < SRR4302533.3257938/94‑1 (MQ=60)
TATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTG < SRR4302533.5105281/94‑1 (MQ=60)
ATGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGC > SRR4302533.2717802/1‑94 (MQ=60)
TGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCT > SRR4302533.5969116/1‑94 (MQ=60)
TGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCT > SRR4302533.591502/1‑94 (MQ=60)
TGGATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCT < SRR4302533.3787282/94‑1 (MQ=60)
GATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGG < SRR4302533.365576/94‑1 (MQ=60)
ATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGag > SRR4302533.6088621/1‑92 (MQ=60)
ATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGA > SRR4302533.917692/1‑94 (MQ=60)
ATTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGA < SRR4302533.586501/94‑1 (MQ=60)
TTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAA > SRR4302533.4250290/1‑94 (MQ=60)
TTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAA > SRR4302533.694985/1‑94 (MQ=60)
TTCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAA > SRR4302533.355722/1‑94 (MQ=60)
TCACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAA > SRR4302533.2179537/1‑94 (MQ=60)
CACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAG < SRR4302533.1840982/94‑1 (MQ=60)
CACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGCTGCTGGAAAG > SRR4302533.443298/1‑94 (MQ=60)
ACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGT < SRR4302533.4666419/94‑1 (MQ=60)
ACGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGT < SRR4302533.2709328/94‑1 (MQ=60)
CGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTG > SRR4302533.5037245/1‑94 (MQ=60)
CGGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTG < SRR4302533.466967/94‑1 (MQ=60)
GGCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGC > SRR4302533.1737316/1‑94 (MQ=60)
GCCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCG < SRR4302533.3356361/94‑1 (MQ=60)
CCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGG < SRR4302533.5377036/94‑1 (MQ=60)
CCCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGG < SRR4302533.1086237/94‑1 (MQ=60)
CCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGG > SRR4302533.3752311/1‑94 (MQ=60)
CCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGG > SRR4302533.1888732/1‑94 (MQ=60)
CCGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGG > SRR4302533.630431/1‑94 (MQ=60)
CGGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGA > SRR4302533.2918354/1‑94 (MQ=60)
GGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGAC < SRR4302533.50650/94‑1 (MQ=60)
GGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGAC > SRR4302533.3820740/1‑94 (MQ=60)
GGCTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGAC < SRR4302533.531122/94‑1 (MQ=60)
CTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGC < SRR4302533.4263218/94‑1 (MQ=60)
CTTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGC > SRR4302533.5181805/1‑94 (MQ=60)
TTAAGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCA > SRR4302533.3482405/1‑94 (MQ=60)
AGGGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCACGT > SRR4302533.5847510/1‑94 (MQ=60)
GGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCACGTGG < SRR4302533.4400899/94‑1 (MQ=60)
GGCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCACGTGG < SRR4302533.3233378/94‑1 (MQ=60)
GCCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCACGTGGG > SRR4302533.877352/1‑94 (MQ=60)
|
CCGGATGGCAGATTACGCATGCTTTTTGGTTCCGGTTCCACCAGCACTCGAGGATTATGAAATATCTGTATGGATTCACGGCCCGGCTTAAGGACCACCAGCCCAAGCTCAGGCACCAGAACAGGTCTAAGTAATACCCGCACGTTACCTCCAGATCCGTTGCTGGAAAGTGCGGGACGCACGTGGT > NC_000913/1642186‑1642372
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
