Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,655,245	T→C	L91L (TTA→TTG)	ynfC ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,655,245	0	T	C	100.0%	807.8 / NA	247	L91L (TTA→TTG)	ynfC	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (120/127); total (120/127)

Only 100 of 249 total aligned reads displayed.

TAAACGTACTCTCTTCTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGTAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATCCATTAATGTCTGAGT  >  NC_000913/1655155‑1655334

tAAACGTACTCTCTTCTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCaa                                                                                         <  1:1038983/93‑1 (MQ=255)

tAAACGTACTCTCTTCTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCaa                                                                                         >  1:2314672/1‑93 (MQ=255)

 aaaCGTACTCTCTTCTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAAt                                                                                        <  1:2701038/93‑1 (MQ=255)

 aaaCGTACTCTCTTCTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAAt                                                                                        <  2:4939371/93‑1 (MQ=255)

      tACTCTCTTCTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAg                                                                                   >  1:487910/1‑93 (MQ=255)

       aCTCTCTTCTCCAGCGTCTCGGCATCACGGTAATAATTGGCGCCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGt                                                                                  >  1:4441152/1‑93 (MQ=255)

        ctctctTCTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTg                                                                                 >  1:1756327/1‑93 (MQ=255)

         tctctTCTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGa                                                                                <  1:3831842/93‑1 (MQ=255)

          ctctTCTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGaa                                                                               >  1:1304520/1‑93 (MQ=255)

          ctctTCTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGaa                                                                               <  1:3028757/93‑1 (MQ=255)

            cttctCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATc                                                                             >  1:2016572/1‑93 (MQ=255)

             ttctCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCa                                                                            >  1:3405223/1‑93 (MQ=255)

             ttctCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCa                                                                            <  2:4521039/93‑1 (MQ=255)

             ttctCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCa                                                                            >  1:867901/1‑93 (MQ=255)

              tctcCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCaa                                                                           <  2:757304/93‑1 (MQ=255)

              tctcCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCaa                                                                           >  2:4992549/1‑93 (MQ=255)

              tctcCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCaa                                                                           >  2:4350995/1‑93 (MQ=255)

               ctcCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCaaa                                                                          <  1:1092431/93‑1 (MQ=255)

                tcCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCaaaa                                                                         >  1:6109560/1‑93 (MQ=255)

                cccAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCaaaa                                                                         <  1:5634062/92‑1 (MQ=255)

                  cAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGTCCACGGTATTATTTTCCAGATCCAGCAATTCGGGTGAATCAAAACa                                                                       <  2:6051039/93‑1 (MQ=255)

                   aGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAg                                                                      <  2:2755939/93‑1 (MQ=255)

                    gCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGc                                                                     >  2:5229568/1‑93 (MQ=255)

                    gCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGc                                                                     <  2:5286852/93‑1 (MQ=255)

                       tctcGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCctt                                                                  >  1:1465106/1‑93 (MQ=255)

                       tctcGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCctt                                                                  <  1:5700205/93‑1 (MQ=255)

                        ctcGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCcttc                                                                 >  2:4003922/1‑93 (MQ=255)

                        ctcGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCcttc                                                                 <  2:3241357/93‑1 (MQ=255)

                         tcGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCcttct                                                                >  2:3617319/1‑93 (MQ=255)

                           ggCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCttcttc                                                              <  2:4172588/93‑1 (MQ=255)

                           ggCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCttcttc                                                              <  1:3604920/93‑1 (MQ=255)

                           ggCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCttcttc                                                              <  1:3186647/93‑1 (MQ=255)

                           ggCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCttcttc                                                              <  2:4704916/93‑1 (MQ=255)

                             cATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCg                                                            >  1:6180285/1‑93 (MQ=255)

                              aTCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGa                                                           >  2:1209661/1‑93 (MQ=255)

                               tCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGAc                                                          >  2:4802470/1‑93 (MQ=255)

                                 aCGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACaa                                                        <  1:674702/93‑1 (MQ=255)

                                  cGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACaaa                                                       <  1:4233361/93‑1 (MQ=255)

                                  cGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACaaa                                                       <  1:5373645/93‑1 (MQ=255)

                                   ggTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAg                                                      >  1:5860133/1‑93 (MQ=255)

                                    gTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGt                                                     <  1:3243777/93‑1 (MQ=255)

                                     taataaTTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTc                                                    <  2:2939846/93‑1 (MQ=255)

                                      aataatTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTcc                                                   >  2:1552708/1‑93 (MQ=255)

                                       ataatTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTccc                                                  <  1:3214705/93‑1 (MQ=255)

                                        taatTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCa                                                 <  2:1473536/93‑1 (MQ=255)

                                          atTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGa                                               <  2:1098481/93‑1 (MQ=255)

                                          atTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGa                                               >  1:3909183/1‑93 (MQ=255)

                                          atTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGa                                               >  1:4762300/1‑93 (MQ=255)

                                           ttGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGaa                                              <  2:1902692/93‑1 (MQ=255)

                                            tGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGaaa                                             >  1:2873244/1‑93 (MQ=255)

                                            tGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGaaa                                             >  2:174504/1‑93 (MQ=255)

                                            tGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGaaa                                             >  2:5567590/1‑93 (MQ=255)

                                             ggCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAac                                            <  1:1844345/93‑1 (MQ=255)

                                              gCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAaca                                           >  2:1939023/1‑93 (MQ=255)

                                              gCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAaca                                           <  1:1595948/93‑1 (MQ=255)

                                                gTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACg                                         >  1:5878308/1‑93 (MQ=255)

                                                gTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACg                                         <  2:3348663/93‑1 (MQ=255)

                                                 tCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGt                                        >  2:799489/1‑93 (MQ=255)

                                                  ccAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGtt                                       <  1:2514158/93‑1 (MQ=255)

                                                    aGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTc                                     >  1:5362895/1‑93 (MQ=255)

                                                      tACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGt                                   <  1:4045456/93‑1 (MQ=255)

                                                      tACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGt                                   <  2:2862225/93‑1 (MQ=255)

                                                          agagCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACt                               <  1:724137/93‑1 (MQ=255)

                                                          agagCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACt                               >  1:3314028/1‑93 (MQ=255)

                                                           gagCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACtt                              >  2:4217084/1‑93 (MQ=255)

                                                           gagCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACtt                              >  2:2205134/1‑93 (MQ=255)

                                                             gCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCa                            <  2:3729474/93‑1 (MQ=255)

                                                               gACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCAcc                          >  1:4220618/1‑93 (MQ=255)

                                                               gACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCAcc                          >  1:4108849/1‑93 (MQ=255)

                                                               gACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCAcc                          >  2:1429052/1‑93 (MQ=255)

                                                               gACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCAcc                          <  1:1263029/93‑1 (MQ=255)

                                                                aCCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCt                         >  2:2003752/1‑93 (MQ=255)

                                                                 ccACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCCCTTCACCtt                        <  2:956547/93‑1 (MQ=255)

                                                                 ccACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCtt                        >  1:3727567/1‑93 (MQ=255)

                                                                   aCGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGc                      <  2:3951352/93‑1 (MQ=255)

                                                                     ggTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTACTTCCGACAAAGTCCCAGAAACTCGTTTCGTCACTTCACCTTGCTc                    <  2:5073716/93‑1 (MQ=255)

                                                                        attcttTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATc                 <  2:1002443/93‑1 (MQ=255)

                                                                        attattTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATc                 >  2:2460125/1‑93 (MQ=255)

                                                                        attattTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATc                 <  2:5144628/93‑1 (MQ=255)

                                                                         ttattTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATcc                >  1:2592957/1‑93 (MQ=255)

                                                                          tattTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATCCa               >  2:5453305/1‑93 (MQ=255)

                                                                           attTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCGCTTCACCTTGCTCATCCAt              <  2:6125326/93‑1 (MQ=255)

                                                                           attTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATCCAt              >  2:5915198/1‑93 (MQ=255)

                                                                            ttttCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATCCAtt             >  2:1130262/1‑93 (MQ=255)

                                                                             tttCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATCCATTa            >  1:1969316/1‑93 (MQ=255)

                                                                             tttCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATCCATTa            <  2:636319/93‑1 (MQ=255)

                                                                              ttCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATCCATTaa           <  2:2039443/93‑1 (MQ=255)

                                                                              ttCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATCCATTaa           >  2:5822852/1‑93 (MQ=255)

                                                                               tCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATCCATTAAt          <  1:908976/93‑1 (MQ=255)

                                                                               tCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATCCATTAAt          <  2:574800/93‑1 (MQ=255)

                                                                               tCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATCCATTAAt          >  2:26328/1‑93 (MQ=255)

                                                                                ccAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATCCATTAATg         <  1:2100087/93‑1 (MQ=255)

                                                                                 cAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATCCATTAATGt        >  2:5511654/1‑93 (MQ=255)

                                                                                   gATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATCCATTAATGTCt      >  2:2126528/1‑93 (MQ=255)

                                                                                   gATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATCCATTAATGTCt      >  1:1025944/1‑93 (MQ=255)

                                                                                    aTCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATCCATTAATGTCTg     <  1:4558265/93‑1 (MQ=255)

                                                                                     tCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATCCATTAATGTCTGa    <  2:6246584/93‑1 (MQ=255)

                                                                                      ccAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATCCATTAATGTCTGAg   >  1:3364323/1‑93 (MQ=255)

                                                                                      ccAGCAATTCGAGTGAATCAAAACAGCCTTCTTACGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATCCATTAATGTCTGAg   >  2:5221408/1‑93 (MQ=255)

                                                                                       cAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATCCATTAATGTCTGAGt  <  1:3109798/93‑1 (MQ=255)

TAAACGTACTCTCTTCTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGTAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATCCATTAATGTCTGAGT  >  NC_000913/1655155‑1655334

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CTGTAAACGTACTCTCTTCTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGTAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATCCATTAATGTCTGAGTGAAA  >  NC_000913/1655152‑1655338

CTGTAAACGTACTCTCTTCTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGC                                                                                               <  SRR4302533.693982/94‑1 (MQ=60)

CTGTAAACGTACTCTCTTCTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGC                                                                                               <  SRR4302533.5942720/94‑1 (MQ=60)

CTGTAAACGTACTCTCTTCTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGC                                                                                               >  SRR4302533.5818735/1‑94 (MQ=60)

 TGTACACGTACTCTCTTCTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGGTCCAGCA                                                                                              <  SRR4302533.1450119/94‑1 (MQ=60)

 TGTAAACGTACTCTCTTCTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCA                                                                                              >  SRR4302533.3331928/1‑94 (MQ=60)

 TGTAAACGTACTCTCTTCTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCA                                                                                              <  SRR4302533.701314/94‑1 (MQ=60)

  GTAAACGTACTCTCTTCTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAA                                                                                             >  SRR4302533.2329009/1‑94 (MQ=60)

   TAAACGTACTCTCTTCTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAAT                                                                                            <  SRR4302533.1045089/94‑1 (MQ=60)

    AAACGTACTCTCTTCTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATT                                                                                           <  SRR4302533.2717609/94‑1 (MQ=60)

      ACGTACTCTCTTCTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCG                                                                                         <  SRR4302533.3613024/94‑1 (MQ=60)

        GTACTCTCTTCTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCTGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAG                                                                                       <  SRR4302533.4579473/94‑1 (MQ=60)

        GTACTCTCTTCTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAG                                                                                       >  SRR4302533.490827/1‑94 (MQ=60)

         TACTCTCTTCTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGT                                                                                      <  SRR4302533.953726/94‑1 (MQ=60)

         TACTCTCTTCTCCAGCGTCTCGGCATCACGGTAATAATTGGCGCCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGT                                                                                      >  SRR4302533.4468003/1‑94 (MQ=60)

          TCTCTCTTCTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTG                                                                                     <  SRR4302533.47601/94‑1 (MQ=60)

          ACTCTCTTCTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTG                                                                                     >  SRR4302533.1767026/1‑94 (MQ=60)

          ACTCTCTGCTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTG                                                                                     <  SRR4302533.737096/94‑1 (MQ=60)

           CTCTCTTCTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGCTATTATTTTCCAGATCCAGCAATTCGAGTGA                                                                                    >  SRR4302533.214116/1‑94 (MQ=60)

            TCTCTTCTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAA                                                                                   >  SRR4302533.1312359/1‑94 (MQ=60)

            TCTCTTCTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAA                                                                                   <  SRR4302533.3855265/94‑1 (MQ=60)

             CTCTTCTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAAT                                                                                  <  SRR4302533.3047291/94‑1 (MQ=60)

              TCTTCTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATC                                                                                 >  SRR4302533.2028998/1‑94 (MQ=60)

              TCTTCTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATC                                                                                 >  SRR4302533.3794275/1‑94 (MQ=60)

               CTTCTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCA                                                                                >  SRR4302533.872988/1‑94 (MQ=60)

               CTTCTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCA                                                                                <  SRR4302533.5332420/94‑1 (MQ=60)

               CTTCTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCA                                                                                >  SRR4302533.3426254/1‑94 (MQ=60)

               CTTCTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCA                                                                                >  SRR4302533.4735359/1‑94 (MQ=60)

                TTCTCCATCGTCTCGGCATCACGGTAATAAGTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAA                                                                               <  SRR4302533.2977389/94‑1 (MQ=60)

                TTCTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAA                                                                               <  SRR4302533.4810412/94‑1 (MQ=60)

                 TCTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAA                                                                              <  SRR4302533.6294695/94‑1 (MQ=60)

                  CTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAA                                                                             >  SRR4302533.945847/1‑94 (MQ=60)

                  CTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAA                                                                             >  SRR4302533.1457538/1‑94 (MQ=60)

                  CTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAA                                                                             <  SRR4302533.1098893/94‑1 (MQ=60)

                  CTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAA                                                                             >  SRR4302533.2774392/1‑94 (MQ=60)

                  CTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAA                                                                             >  SRR4302533.6146441/1‑94 (MQ=60)

                  CTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAA                                                                             >  SRR4302533.3206070/1‑94 (MQ=60)

                   TCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAAC                                                                            >  SRR4302533.541199/1‑94 (MQ=60)

                   TCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAAC                                                                            >  SRR4302533.1073544/1‑94 (MQ=60)

                   CCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAAC                                                                            <  SRR4302533.5668131/94‑1 (MQ=60)

                    CCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACA                                                                           >  SRR4302533.3025005/1‑94 (MQ=60)

                    CCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACA                                                                           <  SRR4302533.3379230/94‑1 (MQ=60)

                     CAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAG                                                                          <  SRR4302533.381317/94‑1 (MQ=60)

                      AGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGC                                                                         >  SRR4302533.1292011/1‑94 (MQ=60)

                        CGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCT                                                                       <  SRR4302533.6331877/94‑1 (MQ=60)

                        CGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCT                                                                       >  SRR4302533.3234566/1‑94 (MQ=60)

                         GTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTT                                                                      <  SRR4302533.823579/94‑1 (MQ=60)

                         GTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTT                                                                      >  SRR4302533.1473940/1‑94 (MQ=60)

                         GTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTT                                                                      >  SRR4302533.2395123/1‑94 (MQ=60)

                          TCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTC                                                                     <  SRR4302533.5734628/94‑1 (MQ=60)

                           CTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCT                                                                    >  SRR4302533.2026347/1‑94 (MQ=60)

                           CTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCT                                                                    <  SRR4302533.6033842/94‑1 (MQ=60)

                            TCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTT                                                                   <  SRR4302533.2425480/94‑1 (MQ=60)

                             CGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTC                                                                  <  SRR4302533.1794405/94‑1 (MQ=60)

                              GGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCC                                                                 <  SRR4302533.4220070/94‑1 (MQ=60)

                              GGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCC                                                                 <  SRR4302533.3627109/94‑1 (MQ=60)

                              GGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCC                                                                 <  SRR4302533.6216342/94‑1 (MQ=60)

                              GGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCC                                                                 <  SRR4302533.3206252/94‑1 (MQ=60)

                              GGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCC                                                                 <  SRR4302533.5730202/94‑1 (MQ=60)

                               GCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCG                                                                <  SRR4302533.6041329/94‑1 (MQ=60)

                               GCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCG                                                                >  SRR4302533.6217401/1‑94 (MQ=60)

                                CATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGA                                                               >  SRR4302533.439825/1‑94 (MQ=60)

                                CATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGA                                                               >  SRR4302533.4371448/1‑94 (MQ=60)

                                 ATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGAC                                                              >  SRR4302533.3956823/1‑94 (MQ=60)

                                    ACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAA                                                           <  SRR4302533.678685/94‑1 (MQ=60)

                                     CGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAG                                                          <  SRR4302533.4258943/94‑1 (MQ=60)

                                     CGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAG                                                          <  SRR4302533.5405935/94‑1 (MQ=60)

                                     CGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAG                                                          >  SRR4302533.5895560/1‑94 (MQ=60)

                                      GGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGT                                                         >  SRR4302533.3387401/1‑94 (MQ=60)

                                       GTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTC                                                        <  SRR4302533.3263767/94‑1 (MQ=60)

                                       GTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGACCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTC                                                        <  SRR4302533.2673533/94‑1 (MQ=60)

                                         AATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCC                                                      <  SRR4302533.1751804/94‑1 (MQ=60)

                                         AATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCC                                                      >  SRR4302533.5221861/1‑94 (MQ=60)

                                          ATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCA                                                     <  SRR4302533.4141686/94‑1 (MQ=60)

                                          ATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCA                                                     <  SRR4302533.3234525/94‑1 (MQ=60)

                                          ATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCA                                                     >  SRR4302533.5812868/1‑94 (MQ=60)

                                            AATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGA                                                   >  SRR4302533.3933059/1‑94 (MQ=60)

                                            AATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGA                                                   >  SRR4302533.4791185/1‑94 (MQ=60)

                                             ATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAA                                                  >  SRR4302533.3475379/1‑94 (MQ=60)

                                              TTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCTAGATCCAGCAATTCGAGTGAATCAAAACAGACTTCTTCCGACAAAGTCTCAGAAA                                                 >  SRR4302533.4249518/1‑94 (MQ=60)

                                              TTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAA                                                 >  SRR4302533.2890924/1‑94 (MQ=60)

                                                GGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACA                                               <  SRR4302533.1855594/94‑1 (MQ=60)

                                                 GCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACAC                                              <  SRR4302533.1605606/94‑1 (MQ=60)

                                                  CGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACG                                             >  SRR4302533.5913839/1‑94 (MQ=60)

                                                     CCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTT                                          <  SRR4302533.5776908/94‑1 (MQ=60)

                                                     CCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTT                                          <  SRR4302533.2529649/94‑1 (MQ=60)

                                                      CAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACGAAGTCCCAGAAACACGATTC                                         >  SRR4302533.71427/1‑94 (MQ=60)

                                                      CAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTC                                         <  SRR4302533.123912/94‑1 (MQ=60)

                                                      CAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTC                                         >  SRR4302533.5395103/1‑94 (MQ=60)

                                                      CAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTC                                         <  SRR4302533.2081682/94‑1 (MQ=60)

                                                       AGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCG                                        >  SRR4302533.3260414/1‑94 (MQ=60)

                                                         TACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTC                                      <  SRR4302533.4070076/94‑1 (MQ=60)

                                                         TACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTC                                      <  SRR4302533.5405473/94‑1 (MQ=60)

                                                          ACCAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCA                                     >  SRR4302533.893230/1‑94 (MQ=60)

                                                            CAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACT                                   >  SRR4302533.3334489/1‑94 (MQ=60)

                                                            CAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACT                                   >  SRR4302533.3129970/1‑94 (MQ=60)

                                                            CAGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACT                                   >  SRR4302533.5566409/1‑94 (MQ=60)

                                                             AGAGCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTT                                  <  SRR4302533.728417/94‑1 (MQ=60)

                                                                GCGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCAC                               <  SRR4302533.1885069/94‑1 (MQ=60)

                                                                 CGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACC                              >  SRR4302533.4133830/1‑94 (MQ=60)

                                                                 CGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACC                              >  SRR4302533.2529694/1‑94 (MQ=60)

                                                                 CGACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACC                              >  SRR4302533.4246141/1‑94 (MQ=60)

                                                                  GACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCT                             <  SRR4302533.1039430/94‑1 (MQ=60)

                                                                  GACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCT                             <  SRR4302533.1270585/94‑1 (MQ=60)

                                                                   ACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTT                            <  SRR4302533.1141259/94‑1 (MQ=60)

                                                                   ACCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTT                            >  SRR4302533.3750432/1‑94 (MQ=60)

                                                                    CCACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTG                           <  SRR4302533.2051931/94‑1 (MQ=60)

                                                                     CACTGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGC                          >  SRR4302533.3360241/1‑94 (MQ=60)

                                                                     CACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGC                          >  SRR4302533.5895667/1‑94 (MQ=60)

                                                                      ACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCT                         >  SRR4302533.4108256/1‑94 (MQ=60)

                                                                      ACGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCT                         <  SRR4302533.2627186/94‑1 (MQ=60)

                                                                       CGGTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTC                        <  SRR4302533.3926367/94‑1 (MQ=60)

                                                                         GTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCAT                      <  SRR4302533.189101/94‑1 (MQ=60)

                                                                         GTATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCAT                      >  SRR4302533.1399571/1‑94 (MQ=60)

                                                                           ATTATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATCC                    >  SRR4302533.2608891/1‑94 (MQ=60)

                                                                             TATTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATCCAT                  >  SRR4302533.4014594/1‑94 (MQ=60)

                                                                               TTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATCCATTA                >  SRR4302533.1981359/1‑94 (MQ=60)

                                                                               TTTTCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATCCATTA                <  SRR4302533.1519461/94‑1 (MQ=60)

                                                                                  TCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATCCATTAATG             <  SRR4302533.1612930/94‑1 (MQ=60)

                                                                                  TCCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATCCATTAATG             <  SRR4302533.914307/94‑1 (MQ=60)

                                                                                   CCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATCCATTAATGT            >  SRR4302533.321147/1‑94 (MQ=60)

                                                                                   CCAGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATCCATTAATGT            <  SRR4302533.2113041/94‑1 (MQ=60)

                                                                                     AGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATCCATTAATGTCT          >  SRR4302533.3702116/1‑94 (MQ=60)

                                                                                     AGATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATCCATTAATGTCT          >  SRR4302533.1031973/1‑94 (MQ=60)

                                                                                       ATCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATCCATTAATGTCTGA        <  SRR4302533.4585909/94‑1 (MQ=60)

                                                                                        TCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATCCATTAATGTCTGAG       <  SRR4302533.3047517/94‑1 (MQ=60)

                                                                                        TCCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATCCATTAATGTCTGAG       >  SRR4302533.3385108/1‑94 (MQ=60)

                                                                                         CCAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATCCATTAATGTCTGAGT      >  SRR4302533.3308488/1‑94 (MQ=60)

                                                                                          CAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATCCATTAATGTCTGAGTG     >  SRR4302533.817874/1‑94 (MQ=60)

                                                                                          CAGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATCCATTAATGTCTGAGTG     <  SRR4302533.3128911/94‑1 (MQ=60)

                                                                                           AGCAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATCCATTAATGTCTGAGTGA    >  SRR4302533.4011557/1‑94 (MQ=60)

                                                                                             CAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATCCATTAATGTCTGAGTGAAA  >  SRR4302533.5074529/1‑94 (MQ=60)

CTGTAAACGTACTCTCTTCTCCAGCGTCTCGGCATCACGGTAATAATTGGCGTCCAGTACCAGAGCGACCACGGTATTATTTTCCAGATCCAGTAATTCGAGTGAATCAAAACAGCCTTCTTCCGACAAAGTCCCAGAAACACGTTTCGTCACTTCACCTTGCTCATCCATTAATGTCTGAGTGAAA  >  NC_000913/1655152‑1655338

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`