Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
884 |
257.2 |
12958910 |
96.9% |
12557183 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,963,195 |
A→G |
H17H (CAT→CAC) |
rhlB ← |
putative ATP‑dependent RNA helicase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,963,195 | 0 | A | G | 100.0%
| 835.8
/ NA
| 237 | H17H (CAT→CAC) | rhlB | putative ATP‑dependent RNA helicase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (105/132); total (105/132) |
Only 100 of 237 total aligned reads displayed.
ACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGAAA > NC_000913/3963105‑3963283
|
ccGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTg < 1:5529090/92‑1 (MQ=255)
aCGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTg > 1:6012140/1‑93 (MQ=255)
gagccGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTAAAACCTTCGGGTGCa < 2:5308676/90‑1 (MQ=255)
ccccGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAg < 2:1564688/92‑1 (MQ=255)
aCCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAg < 2:4878153/93‑1 (MQ=255)
cccGCGAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAgg < 1:4693179/93‑1 (MQ=255)
ccGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAggg > 1:1558511/1‑93 (MQ=255)
ccGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAggg < 1:4577852/93‑1 (MQ=255)
cGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGc > 1:5233362/1‑93 (MQ=255)
cGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGc < 2:3092067/93‑1 (MQ=255)
cGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGc > 2:5496477/1‑93 (MQ=255)
ccAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGa < 2:3616065/93‑1 (MQ=255)
ccAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGa < 1:2135843/93‑1 (MQ=255)
cAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGaa < 1:2238124/93‑1 (MQ=255)
gCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGt < 2:2229512/93‑1 (MQ=255)
gCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGt < 2:508091/93‑1 (MQ=255)
aGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAACCCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGaa < 2:1445323/93‑1 (MQ=255)
aGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGaa < 1:4359079/93‑1 (MQ=255)
aGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGaa < 2:4071096/93‑1 (MQ=255)
gCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGaaa > 1:3771206/1‑93 (MQ=255)
cGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGaaaa < 2:863148/93‑1 (MQ=255)
ggAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAAc < 2:2759123/93‑1 (MQ=255)
ggAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAAc > 2:3197895/1‑93 (MQ=255)
gAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACt > 1:268352/1‑93 (MQ=255)
gAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACt < 1:3032675/93‑1 (MQ=255)
gAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACt > 2:5628429/1‑93 (MQ=255)
gAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACt > 2:6074532/1‑93 (MQ=255)
aaGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACtt > 2:5736514/1‑93 (MQ=255)
aGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACttc < 1:1366767/93‑1 (MQ=255)
aGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACttc > 2:304192/1‑93 (MQ=255)
aGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACttc > 1:2973452/1‑93 (MQ=255)
aGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACttc < 2:598180/93‑1 (MQ=255)
aGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACttc < 2:1241596/93‑1 (MQ=255)
gCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACttctgt < 2:6380188/93‑1 (MQ=255)
cAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACttctgttc < 2:6449480/93‑1 (MQ=255)
aGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACttctgttct < 2:2490900/93‑1 (MQ=255)
gTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACttctgttctg > 2:4729268/1‑93 (MQ=255)
gTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACttctgttctg > 1:5467291/1‑93 (MQ=255)
gTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACttctgttctg > 1:3693938/1‑93 (MQ=255)
gTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGACGGAAAACttctgttctg < 1:6464436/93‑1 (MQ=255)
tGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTtctgttctgt < 2:1753178/93‑1 (MQ=255)
tGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGCCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTtctgttctgt < 1:6374598/93‑1 (MQ=255)
gCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTctgttctgtt > 1:2079079/1‑93 (MQ=255)
gCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTctgttctgtt < 1:6235186/93‑1 (MQ=255)
tGAATGGGCGTATAGTAATGAAACCCTTTTTTTCCAAGGGCTTCTACACCCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTaaa < 2:1183112/93‑1 (MQ=255)
tGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTaaa > 1:1855112/1‑93 (MQ=255)
tGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTaaa > 1:1111287/1‑93 (MQ=255)
gAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAAt > 2:1335628/1‑93 (MQ=255)
gAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAAt > 1:3810058/1‑93 (MQ=255)
aaTGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAAtg > 1:3227507/1‑93 (MQ=255)
aaTGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAAtg < 2:1671671/93‑1 (MQ=255)
tGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAAtgtg < 2:498956/93‑1 (MQ=255)
gggCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATgtgt > 2:4540384/1‑93 (MQ=255)
ggCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGtt < 1:3178785/93‑1 (MQ=255)
ggCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGtt < 1:4779009/93‑1 (MQ=255)
gTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTg > 2:6217350/1‑93 (MQ=255)
gTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTg > 1:5316487/1‑93 (MQ=255)
tACAGTTATGAACCCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGc < 2:2305085/93‑1 (MQ=255)
aGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCa < 1:5755586/93‑1 (MQ=255)
aGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCa > 2:4930480/1‑93 (MQ=255)
gTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCAt < 2:5439484/93‑1 (MQ=255)
gTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCAt > 2:693274/1‑93 (MQ=255)
tATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAg > 2:196372/1‑93 (MQ=255)
aTGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAgt < 1:3209311/93‑1 (MQ=255)
aaaCCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGtgtg > 2:6009227/1‑93 (MQ=255)
aaCCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTgg > 1:5200418/1‑93 (MQ=255)
aaCCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTgg > 2:4774180/1‑93 (MQ=255)
aaCCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTgg < 1:3625511/93‑1 (MQ=255)
aCCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGt > 2:2370797/1‑93 (MQ=255)
cccTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTa < 1:2816172/93‑1 (MQ=255)
cccTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTa > 1:2487761/1‑93 (MQ=255)
cccTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTa > 2:2730000/1‑93 (MQ=255)
cccTTTTGTTTCAAGGGCTTCTACAACCGTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTa < 1:1265418/93‑1 (MQ=255)
ccTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAg > 1:4248149/1‑93 (MQ=255)
tttttttCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAat > 1:1616485/1‑93 (MQ=255)
tttttCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAatat > 2:3876617/1‑93 (MQ=255)
ttttCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATc < 1:2392375/93‑1 (MQ=255)
tttCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCa < 1:2895711/93‑1 (MQ=255)
tCAAGGGCTTCTATAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGc < 2:3665917/93‑1 (MQ=255)
tCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGc < 2:1396422/93‑1 (MQ=255)
tCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGc > 1:410050/1‑93 (MQ=255)
aaGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCtt > 2:5129455/1‑93 (MQ=255)
aaGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCtt > 1:5695381/1‑93 (MQ=255)
aaGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCtt > 2:1019748/1‑93 (MQ=255)
aaGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCtt > 1:2944755/1‑93 (MQ=255)
aaGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCtt > 2:4638241/1‑93 (MQ=255)
aGGGCTTCTACAACCTTCGGGTTCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTa > 2:327973/1‑93 (MQ=255)
aGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTa > 1:4551088/1‑93 (MQ=255)
aGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTa > 2:2109152/1‑93 (MQ=255)
cTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTAt < 2:2874717/93‑1 (MQ=255)
ttCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTAtt < 1:80488/93‑1 (MQ=255)
cTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGc < 1:3424265/93‑1 (MQ=255)
cTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGc < 1:14978/93‑1 (MQ=255)
tACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCt > 1:5038040/1‑93 (MQ=255)
aaCCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTa < 1:5807630/93‑1 (MQ=255)
aCCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTAc > 1:3309224/1‑93 (MQ=255)
aCCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTAc < 2:4431333/93‑1 (MQ=255)
cTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGa > 1:2295959/1‑93 (MQ=255)
cTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGa > 2:3260219/1‑93 (MQ=255)
ttCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGaa < 2:1471642/93‑1 (MQ=255)
|
ACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGAAA > NC_000913/3963105‑3963283
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGAAAGCGTA > NC_000913/3963104‑3963288
|
CACGCCCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTG < SRR4302534.501464/94‑1 (MQ=60)
CACGCCCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTG < SRR4302534.4497207/94‑1 (MQ=60)
CACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTG < SRR4302534.3061205/94‑1 (MQ=60)
CACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTG > SRR4302534.6175502/1‑94 (MQ=60)
CACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTG > SRR4302534.404600/1‑94 (MQ=60)
CCGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGC < SRR4302534.5678318/94‑1 (MQ=60)
ACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGC > SRR4302534.3037459/1‑94 (MQ=60)
CGCCCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCA < SRR4302534.466793/94‑1 (MQ=60)
cgCCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAG < SRR4302534.6456176/92‑1 (MQ=60)
GACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAG > SRR4302534.3301377/1‑94 (MQ=60)
CCCGCGAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGG < SRR4302534.4820568/94‑1 (MQ=60)
CCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGG > SRR4302534.1599314/1‑94 (MQ=60)
CCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGG > SRR4302534.5761694/1‑94 (MQ=60)
CCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGC > SRR4302534.5374654/1‑94 (MQ=60)
CCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGC < SRR4302534.2266825/94‑1 (MQ=60)
CCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGC < SRR4302534.4702014/94‑1 (MQ=60)
GCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGA > SRR4302534.373760/1‑94 (MQ=60)
GCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGA > SRR4302534.2730600/1‑94 (MQ=60)
CCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAA < SRR4302534.2192152/94‑1 (MQ=60)
CAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAG < SRR4302534.2297434/94‑1 (MQ=60)
CAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTGACAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAG < SRR4302534.3477347/94‑1 (MQ=60)
GTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGG < SRR4302534.5671288/94‑1 (MQ=60)
CAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAA > SRR4302534.5971618/1‑94 (MQ=60)
AGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAA < SRR4302534.4476682/94‑1 (MQ=60)
AGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAA > SRR4302534.3872475/1‑94 (MQ=60)
GGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACT < SRR4302534.3144577/94‑1 (MQ=60)
GGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACT > SRR4302534.275310/1‑94 (MQ=60)
GAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTT < SRR4302534.3112200/94‑1 (MQ=60)
GAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTT < SRR4302534.1468732/94‑1 (MQ=60)
AAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTC < SRR4302534.3091774/94‑1 (MQ=60)
AAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTC > SRR4302534.3051292/1‑94 (MQ=60)
AGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCT < SRR4302534.1170310/94‑1 (MQ=60)
AGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCT < SRR4302534.1402760/94‑1 (MQ=60)
AGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCT > SRR4302534.721849/1‑94 (MQ=60)
AGCGCCAGTGCCTGAATGGGCGTACAGTTATGAACCACTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCT < SRR4302534.1974097/94‑1 (MQ=60)
GGCCAGTGCCTGAATGGGCGTACAGTTATGAATCCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGT < SRR4302534.4223487/94‑1 (MQ=60)
CCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTC < SRR4302534.1691594/94‑1 (MQ=60)
AGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTG > SRR4302534.5614661/1‑94 (MQ=60)
AGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTG > SRR4302534.3793257/1‑94 (MQ=60)
GTGCCTGAATGGGCGTACAGTTATGAAGCCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGT < SRR4302534.1437396/94‑1 (MQ=60)
GTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGT < SRR4302534.3351052/94‑1 (MQ=60)
GTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGACGGAAAACTTCTGTTCTGT < SRR4302534.6638551/94‑1 (MQ=60)
TGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTT > SRR4302534.2133529/1‑94 (MQ=60)
TGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGCCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTT < SRR4302534.6546736/94‑1 (MQ=60)
GCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTA < SRR4302534.5806835/94‑1 (MQ=60)
GCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTA < SRR4302534.6404424/94‑1 (MQ=60)
CCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAA > SRR4302534.1634704/1‑94 (MQ=60)
CTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAA > SRR4302534.1903382/1‑94 (MQ=60)
CTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAA > SRR4302534.2896265/1‑94 (MQ=60)
CTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAA > SRR4302534.1140281/1‑94 (MQ=60)
TGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTATAT > SRR4302534.6423691/1‑94 (MQ=60)
TGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAAT > SRR4302534.3912363/1‑94 (MQ=60)
GAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATG > SRR4302534.3313256/1‑94 (MQ=60)
AATGGGCGTACAGTTATGAACCCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGCGCGAAGTCGGAAAACTTCTGTTCTGGTAAATGT < SRR4302534.5318613/94‑1 (MQ=60)
ATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTG > SRR4302534.2152217/1‑94 (MQ=60)
GGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTT < SRR4302534.3262746/94‑1 (MQ=60)
GGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTT < SRR4302534.4908784/94‑1 (MQ=60)
GCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTT < SRR4302534.2485042/94‑1 (MQ=60)
CGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTG < SRR4302534.5859960/94‑1 (MQ=60)
CGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTG > SRR4302534.5459901/1‑94 (MQ=60)
TACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCT > SRR4302534.4443012/1‑94 (MQ=60)
ACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTC < SRR4302534.3021832/94‑1 (MQ=60)
ACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTC < SRR4302534.2218312/94‑1 (MQ=60)
CAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCA > SRR4302534.5349975/1‑94 (MQ=60)
AGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCAT < SRR4302534.5911696/94‑1 (MQ=60)
TTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAG > SRR4302534.4119384/1‑94 (MQ=60)
TTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAG < SRR4302534.3271568/94‑1 (MQ=60)
TTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAG < SRR4302534.3027100/94‑1 (MQ=60)
TATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGT < SRR4302534.3555294/94‑1 (MQ=60)
TATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGT < SRR4302534.4584292/94‑1 (MQ=60)
ATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTG < SRR4302534.3294476/94‑1 (MQ=60)
ATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTG < SRR4302534.2315080/94‑1 (MQ=60)
TGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGT < SRR4302534.2385829/94‑1 (MQ=60)
AAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGG > SRR4302534.5340713/1‑94 (MQ=60)
AACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGT < SRR4302534.3722977/94‑1 (MQ=60)
AACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGT < SRR4302534.2833888/94‑1 (MQ=60)
ACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTA > SRR4302534.2553846/1‑94 (MQ=60)
CCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAG > SRR4302534.4362740/1‑94 (MQ=60)
CCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAG < SRR4302534.5493473/94‑1 (MQ=60)
CCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAG > SRR4302534.893515/1‑94 (MQ=60)
CCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAG < SRR4302534.4890644/94‑1 (MQ=60)
CCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAG < SRR4302534.2890219/94‑1 (MQ=60)
CCCTTTTGTTTCAAGGGCTTCTACAACCGTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAG < SRR4302534.1298751/94‑1 (MQ=60)
CCTTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGA < SRR4302534.2399872/94‑1 (MQ=60)
TTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAAT > SRR4302534.1658659/1‑94 (MQ=60)
TTTTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAAT < SRR4302534.6623801/94‑1 (MQ=60)
TTTTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATAT < SRR4302534.6330741/94‑1 (MQ=60)
TTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCA < SRR4302534.992396/94‑1 (MQ=60)
TTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCA < SRR4302534.4753634/94‑1 (MQ=60)
TTTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCA < SRR4302534.2455954/94‑1 (MQ=60)
TTTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAG < SRR4302534.2971720/94‑1 (MQ=60)
TTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGC < SRR4302534.2888133/94‑1 (MQ=60)
TTCAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGC > SRR4302534.420534/1‑94 (MQ=60)
CAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTT > SRR4302534.3022039/1‑94 (MQ=60)
CAAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTT > SRR4302534.5849667/1‑94 (MQ=60)
AAGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTA > SRR4302534.4674454/1‑94 (MQ=60)
AGGGCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTAC > SRR4302534.1323911/1‑94 (MQ=60)
GCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTAT < SRR4302534.53021/94‑1 (MQ=60)
GCTTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTAT < SRR4302534.538584/94‑1 (MQ=60)
TTCTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTG < SRR4302534.82648/94‑1 (MQ=60)
CTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCT > SRR4302534.5174107/1‑94 (MQ=60)
CTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCT < SRR4302534.15382/94‑1 (MQ=60)
CTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCT > SRR4302534.3259400/1‑94 (MQ=60)
CTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCT < SRR4302534.5021671/94‑1 (MQ=60)
CTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCT < SRR4302534.5450439/94‑1 (MQ=60)
CTACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCT < SRR4302534.3516271/94‑1 (MQ=60)
TACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTT < SRR4302534.3840921/94‑1 (MQ=60)
ACAACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTT > SRR4302534.44384/1‑94 (MQ=60)
AACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTAC > SRR4302534.3397602/1‑94 (MQ=60)
AACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTAC > SRR4302534.5933356/1‑94 (MQ=60)
AACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTAC < SRR4302534.5965256/94‑1 (MQ=60)
AACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTAC > SRR4302534.3891600/1‑94 (MQ=60)
AACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTAC > SRR4302534.1553216/1‑94 (MQ=60)
AACCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTAC > SRR4302534.4770249/1‑94 (MQ=60)
CCTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGA > SRR4302534.2356901/1‑94 (MQ=60)
CTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGAA < SRR4302534.3387464/94‑1 (MQ=60)
CTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGAA < SRR4302534.3762100/94‑1 (MQ=60)
CTTCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGAA < SRR4302534.1779557/94‑1 (MQ=60)
TCGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGAAAG < SRR4302534.6137418/94‑1 (MQ=60)
CGGGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGAAAGC > SRR4302534.5315915/1‑94 (MQ=60)
GGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGAAAGCGT < SRR4302534.3854188/94‑1 (MQ=60)
GGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGAAAGCGT < SRR4302534.1325802/94‑1 (MQ=60)
GGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGAAAGCGT > SRR4302534.6287199/1‑94 (MQ=60)
GGTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGAAAGCGT > SRR4302534.344451/1‑94 (MQ=60)
GTGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGAAAGCGTA > SRR4302534.341480/1‑94 (MQ=60)
|
CACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGAAAGCGTA > NC_000913/3963104‑3963288
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
