Ecoli_resistance_caz: MG1655-pBGT_ceftazidime experiment stats

Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate	Flask count	Isolate count
1	3	3
2	3	3
3	1	1
4	4	7
5	1	1
6	1	1
7	3	3
8	3	6
9	1	1
10	3	3
11	4	7
11	27	36

ALE experiment mutation counts

Mutation Type	Unique	Observed
Single Base Substitutions	26	555
Multiple Base Substitutions	0	0
Deletions	11	185
Insertions	3	72
Mobile Element Insertions	4	11
Amplifications	0	0
Gene Conversions	0	0
Inversions	0	0
Total	44	823

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F4 I0 R1	23	81.6	4402850	91.5%	4028607	99.0
A1 F8 I0 R1	24	78.1	3841328	98.0%	3764501	99.0
A1 F12 I0 R1	24	116.6	6101260	93.8%	5722981	99.0
A2 F4 I0 R1	23	83.6	4416766	96.4%	4257762	99.0
A2 F8 I0 R1	23	110.3	5688336	96.8%	5506309	99.0
A2 F12 I0 R1	23	116.7	6197560	91.2%	5652174	99.0
A3 F4 I0 R1	23	152.4	7609922	95.5%	7267475	99.0
A4 F4 I0 R1	24	72.6	3923924	95.1%	3731651	99.0
A4 F8 I0 R1	23	95.3	4862342	97.3%	4731058	99.0
A4 F12 I0 R1	23	94.9	5204302	90.2%	4694280	99.0
A4 F12 I1 R1	21	141.7	7096806	95.4%	6770352	99.0
A4 F12 I2 R1	22	76.0	5048342	78.0%	3937706	99.0
A4 F12 I3 R1	21	103.7	5192882	95.1%	4938430	99.0
A4 F16 I0 R1	24	109.9	6832306	82.2%	5616155	99.0
A5 F4 I0 R1	23	81.2	7093190	68.8%	4880114	99.0
A6 F4 I0 R1	24	75.9	3928010	97.3%	3821953	99.0
A7 F4 I0 R1	23	105.1	5111788	97.3%	4973769	99.0
A7 F8 I0 R1	24	116.0	6133130	91.3%	5599547	99.0
A7 F12 I0 R1	24	73.1	3635802	95.5%	3472190	99.0
A8 F4 I0 R1	22	84.7	4209898	95.4%	4016242	99.0
A8 F8 I0 R1	27	101.6	5142302	94.3%	4849190	99.0
A8 F12 I0 R1	24	75.1	4088936	89.8%	3671864	99.0
A8 F12 I1 R1	22	109.7	6147784	87.6%	5385458	99.0
A8 F12 I2 R1	22	108.4	5383426	95.6%	5146555	99.0
A8 F12 I3 R1	21	120.9	6534474	90.3%	5900630	99.0
A9 F4 I0 R1	23	52.2	6075524	58.2%	3535954	99.0
A10 F4 I0 R1	23	79.3	3792826	98.2%	3724555	99.0
A10 F8 I0 R1	23	119.2	5771902	97.4%	5621832	99.0
A10 F12 I0 R1	23	116.2	5919842	94.0%	5564651	99.0
A11 F4 I0 R1	23	61.3	2953312	97.9%	2891292	99.0
A11 F8 I0 R1	24	96.9	4951432	93.7%	4639491	99.0
A11 F12 I0 R1	24	112.1	5642436	95.2%	5371599	99.0
A11 F16 I0 R1	26	104.6	5661582	89.8%	5084100	99.0
A11 F16 I1 R1	23	107.5	6200470	86.0%	5332404	99.0
A11 F16 I2 R1	23	85.9	5068114	84.6%	4287624	99.0
A11 F16 I3 R1	23	131.4	7635094	85.4%	6520370	99.0