Baym_M_2016: Manifold0-1gml-1mgml experiment stats

Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate	Flask count	Isolate count
0	1	1
1	3	46
2	4	47

ALE experiment mutation counts

Mutation Type	Unique	Observed
Single Base Substitutions	236	294
Multiple Base Substitutions	0	0
Deletions	34	82
Insertions	8	8
Mobile Element Insertions	0	0
Amplifications	77	105
Gene Conversions	0	0
Inversions	0	0
Total	355	489

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A0 F0 I1 R1	3	57.3	3828570	94.4%	3614170	84.4
A1 F1 I163 R1	3	67.4	4184522	95.4%	3992033	83.8
A1 F1 I164 R1	3	39.1	2496214	95.2%	2376395	83.6
A1 F1 I167 R1	3	73.4	4580044	94.4%	4323561	83.6
A1 F1 I168 R1	5	0.0	0	0.0%	0	0.0
A1 F1 I171 R1	5	16.1	989330	95.6%	945799	85.1
A1 F1 I178 R1	5	19.9	1206538	94.7%	1142591	84.1
A1 F1 I179 R1	4	15.4	992998	94.0%	933418	83.4
A1 F1 I186 R1	8	24.6	1531012	95.8%	1466709	85.8
A1 F1 I187 R1	6	23.1	1435966	95.1%	1365603	84.5
A1 F1 I188 R1	3	28.7	1681193	95.1%	1598814	84.5
A1 F1 I189 R1	1	26.9	1622034	94.1%	1526333	83.5
A1 F2 I162 R1	6	15.7	946214	95.8%	906473	84.7
A1 F2 I165 R1	8	27.1	1578988	93.1%	1470037	82.8
A1 F2 I166 R1	2	36.8	2173302	95.0%	2064636	83.6
A1 F2 I169 R1	5	26.7	1680174	95.5%	1604566	85.8
A1 F2 I170 R1	7	12.4	718492	95.6%	686878	84.8
A1 F2 I172 R1	5	49.1	2890314	95.8%	2768920	84.8
A1 F2 I173 R1	3	26.4	1613602	95.2%	1536149	84.3
A1 F2 I174 R1	5	16.7	978106	94.9%	928222	84.5
A1 F2 I175 R1	221	18.5	1047116	95.1%	995807	84.4
A1 F2 I176 R1	5	22.5	1402940	94.5%	1325778	83.7
A1 F2 I177 R1	4	19.4	1225370	91.1%	1116312	81.1
A1 F2 I180 R1	8	10.5	604646	95.0%	574413	84.4
A1 F2 I181 R1	7	51.6	3187414	94.5%	3012106	84.1
A1 F2 I182 R1	6	25.2	1488490	95.5%	1421507	84.7
A1 F2 I183 R1	5	30.4	1756232	95.0%	1668420	84.2
A1 F2 I184 R1	5	29.4	1696744	94.5%	1603423	83.5
A1 F2 I185 R1	6	29.0	1763960	93.6%	1651066	83.0
A1 F3 I103 R1	7	22.4	1331362	95.8%	1275444	85.7
A1 F3 I105 R1	1	0.0	11566	16.4%	1896	77.4
A1 F3 I106 R1	8	26.7	1508232	95.5%	1440361	84.6
A1 F3 I108 R1	6	36.5	2246664	94.8%	2129837	84.2
A1 F3 I109 R1	7	21.8	1370138	93.5%	1281079	82.9
A1 F3 I110 R1	7	14.1	827136	94.9%	784952	84.4
A1 F3 I111 R1	11	12.6	743568	95.6%	710851	84.6
A1 F3 I112 R1	8	29.7	1803682	95.2%	1717105	85.2
A1 F3 I113 R1	6	30.9	2083036	89.6%	1866400	79.2
A1 F3 I114 R1	9	37.7	2323448	95.6%	2221216	85.5
A1 F3 I115 R1	6	28.9	1736686	95.3%	1655061	85.2
A1 F3 I116 R1	6	28.1	1596566	95.4%	1523123	84.6
A1 F3 I117 R1	8	21.6	1235544	96.2%	1188593	86.3
A1 F3 I118 R1	7	34.4	1912678	96.4%	1843821	85.3
A1 F3 I119 R1	8	11.6	650700	95.5%	621418	84.7
A1 F3 I120 R1	9	30.4	1747664	95.3%	1665523	85.2
A1 F3 I121 R1	8	18.4	1100362	94.4%	1038741	83.6
A1 F3 I145 R1	10	38.4	2426238	94.9%	2302499	84.0