Thermotoga: TM GluGly experiment stats

Notes

Publication:

Latif, Haythem, Joshua A. Lerman, Vasiliy A. Portnoy, Yekaterina Tarasova, Harish Nagarajan, Alexandra C. Schrimpe-Rutledge, Richard D. Smith, et al. 2013. “The Genome Organization of Thermotoga Maritima Reflects Its Lifestyle.” PLoS Genetics 9 (4): e1003485.

ALE, flask, and isolate counts

ALE replicate	Flask count	Isolate count
1	1	1
2	1	1
3	1	1
4	1	1
5	1	1
6	1	1
6	6	6

ALE experiment mutation counts

Mutation Type	Unique	Observed
Single Base Substitutions	76	93
Multiple Base Substitutions	0	0
Deletions	4	19
Insertions	6	11
Mobile Element Insertions	0	0
Amplifications	0	0
Gene Conversions	0	0
Inversions	0	0
Total	86	123

ALE experiment functional change counts

Functional Change Type	Unique	Observed
Intergenic	10	33
Noncoding	1	1
Pseudogene	0	0
Synonymous	0	0
Nonsynonymous	0	0
Total	11	34

Mutation Needle Plot

Mutation Targets