SSW: SSW XYL experiment stats

Notes

Publication:

Sandberg TE, Lloyd CJ, Palsson BO, Feist AM. Laboratory Evolution to Alternating Substrate Environments Yields Distinct Phenotypic and Genetic Adaptive Strategies. Appl Environ Microbiol. 2017;83

ALE, flask, and isolate counts

ALE replicate	Flask count	Isolate count
1	1	1
2	1	1
3	1	1
4	1	1
4	4	4

ALE experiment mutation counts

Mutation Type	Unique	Observed
Single Base Substitutions	31	31
Multiple Base Substitutions	0	0
Deletions	11	21
Insertions	7	13
Mobile Element Insertions	1	3
Amplifications	0	0
Gene Conversions	0	0
Inversions	0	0
Total	50	68

ALE experiment functional change counts

Functional Change Type	Unique	Observed
Intergenic	12	23
Noncoding	0	0
Pseudogene	0	0
Synonymous	0	0
Nonsynonymous	0	0
Total	12	23

Mutation Needle Plot

Mutation Targets