LTEE: LTEE experiment stats

Notes

Publication:

Tenaillon O, Barrick JE, Ribeck N, Deatherage DE, Blanchard JL, Dasgupta A, et al. Tempo and mode of genome evolution in a 50,000-generation experiment. Nature. 2016;536: 165–170

Hypermutator samples were excluded.
Flask were named after generations.
No resequencing data available.

ALE, flask, and isolate counts

ALE replicate	Flask count	Isolate count
1	8	16
2	4	8
3	9	18
4	5	10
5	11	22
6	11	22
6	48	96

ALE experiment mutation counts

Mutation Type	Unique	Observed
Single Base Substitutions	332	1200
Multiple Base Substitutions	2	2
Deletions	116	424
Insertions	40	140
Mobile Element Insertions	171	525
Amplifications	12	32
Gene Conversions	4	15
Inversions	0	0
Total	677	2338

ALE experiment functional change counts

Functional Change Type	Unique	Observed
Intergenic	144	507
Noncoding	0	0
Pseudogene	5	7
Synonymous	0	0
Nonsynonymous	0	0
Total	149	514

Mutation Needle Plot

Mutation Targets