Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
0 1 1
1 2 3
2 3 5
3 4 6
4 10 15

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 24 64
Multiple Base Substitutions 0 0
Deletions 6 27
Insertions 0 0
Mobile Element Insertions 10 31
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 40 122

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 11 0 112.1 3723312 94.3% 3511083 148.4
A1 F28 I1 R1 13 0 34.7 1359410 92.7% 1260173 128.8
A1 F64 I0 R1 91 0 88.6 3166532 97.8% 3096868 142.4
A1 F64 I1 R1 13 0 171.6 6011574 97.4% 5855273 137.3
A2 F12 I1 R1 14 0 37.1 1473030 96.0% 1414108 122.5
A2 F68 I0 R1 84 0 88.8 3123246 98.0% 3060781 142.9
A2 F68 I1 R1 16 0 123.9 4900752 96.9% 4748828 130.5
A2 F71 I0 R1 126 0 88.2 3071856 97.3% 2988915 140.8
A2 F71 I1 R2 15 0 96.4 3441492 97.1% 3341688 135.5
A3 F12 I1 R1 12 0 28.4 1141862 92.9% 1060789 130.8
A3 F31 I1 R1 14 0 39.2 1468162 95.9% 1407967 130.5
A3 F68 I0 R1 105 0 92.9 3110960 97.8% 3042518 143.5
A3 F68 I1 R1 15 0 118.8 4309652 97.2% 4188981 141.1
A3 F70 I0 R1 115 0 82.4 3195270 97.9% 3128169 136.2
A3 F70 I1 R2 15 0 89.9 3216594 97.4% 3132962 134.5

Mutation Needle Plot

Mutation Targets

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