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2056 |
1_4_Butanediol
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Adipic_Acid_and_1_4_Butanediol
|
10.3389/fmicb.2020.00382
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2023-02-02 |
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1294 |
1_chemostat
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Ecoli_SugarSynth_CO2
|
10.1016/j.cell.2016.05.064
|
2021-04-14 |
|
1292 |
2_chemostat
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Ecoli_SugarSynth_CO2
|
10.1016/j.cell.2016.05.064
|
2021-04-14 |
|
1293 |
3_chemostat
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Ecoli_SugarSynth_CO2
|
10.1016/j.cell.2016.05.064
|
2021-04-14 |
|
50 |
42C
|
42C
|
10.1093/molbev/msu209
|
2016-09-12 |
|
1717 |
42C
|
42C
|
10.1093/molbev/msu209
|
2022-08-02 |
|
740 |
42C_Tenaillon-Ara-_LTEE_strain_from_generation_2000-DM25-REL606gbk-stationary-42-Glucose0025-NH4Cl1-KH2PO49-MgSO405-O20
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42C_Tenaillon
|
10.1126/science.1212986
|
2019-04-15 |
|
2052 |
4step0-1gml-10gml-100gml-1mgml
|
Baym_M_2016
|
10.1126/science.aag0822
|
2023-01-26 |
|
1295 |
4_chemostat
|
Ecoli_SugarSynth_CO2
|
10.1016/j.cell.2016.05.064
|
2021-04-14 |
|
1283 |
ace_amp
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Ecoli_antibResist_metabol
|
10.15252/msb.20167028
|
2021-03-29 |
|
1287 |
ace_chl
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Ecoli_antibResist_metabol
|
10.15252/msb.20167028
|
2021-03-29 |
|
1282 |
ace_nor
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Ecoli_antibResist_metabol
|
10.15252/msb.20167028
|
2021-03-29 |
|
1285 |
ace_withoutAntibiotic
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Ecoli_antibResist_metabol
|
10.15252/msb.20167028
|
2021-03-29 |
|
2057 |
Adipic_Acid
|
Adipic_Acid_and_1_4_Butanediol
|
10.1016/j.ymben.2021.05.001
|
2023-02-02 |
|
2046 |
Ag
|
Feng_Dong_2021
|
10.1111/1462-2920.15854
|
2023-01-24 |
|
2047 |
AgNPs
|
Feng_Dong_2021
|
|
2023-01-24 |
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1008 |
ALE_Ecoli_Acetate
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E.coli Acetate
|
10.1007/s00253-016-7724-0
|
2020-03-19 |
|
2017 |
ALE_IBA_tolerance
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Morgan_M_2022
|
10.1016/j.ymben.2021.11.002
|
2023-01-05 |
|
1727 |
antibiotic_doxycycline
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Unconstrained Evolution
|
10.1038/s41559-016-0050
|
2022-08-10 |
|
2081 |
antimicrobial_protein_BAC5
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Reka_Spohn_2019
|
10.1038/s41467-019-12364-6
|
2023-03-17 |
|
2078 |
antimicrobial_protein_CAP18
|
Reka_Spohn_2019
|
10.1038/s41467-019-12364-6
|
2023-03-17 |
|
2080 |
antimicrobial_protein_HBD3
|
Reka_Spohn_2019
|
10.1038/s41467-019-12364-6
|
2023-03-17 |
|
2077 |
antimicrobial_protein_LL37
|
Reka_Spohn_2019
|
10.1038/s41467-019-12364-6
|
2023-03-17 |
|
2082 |
antimicrobial_protein_PEX
|
Reka_Spohn_2019
|
10.1038/s41467-019-12364-6
|
2023-03-17 |
|
2079 |
antimicrobial_protein_PR39
|
Reka_Spohn_2019
|
10.1038/s41467-019-12364-6
|
2023-03-17 |
|
2084 |
antimicrobial_protein_PROA
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Reka_Spohn_2019
|
10.1038/s41467-019-12364-6
|
2023-03-17 |
|
2083 |
antimicrobial_protein_PXB
|
Reka_Spohn_2019
|
10.1038/s41467-019-12364-6
|
2023-03-17 |
|
748 |
application_of_ALE_to_re-optimize_growth_performance_of_genome-reduced_strain_MS56-M9-MG1655gbk
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Genome-Reduced Ecoli
|
10.1038/s41467-019-08888-6
|
2019-05-01 |
|
1523 |
asexual_strain
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Ecoli_sexualRecomb_glycerol
|
10.1038/s41467-017-02323-4
|
2021-05-04 |
|
1251 |
autotrophic_strain
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Ecoli_biomass_CO2
|
10.1016/j.cell.2019.11.009
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2021-03-03 |
|
547 |
AUX2 hisD gltA
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AUX2
|
10.1371/journal.pcbi.1006213
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2018-06-29 |
|
548 |
AUX2 hisD gltB
|
AUX2
|
10.1371/journal.pcbi.1006213
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2018-06-29 |
|
549 |
AUX2 hisD pyrC
|
AUX2
|
10.1371/journal.pcbi.1006213
|
2018-06-29 |
|
928 |
B101_unknown
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Pputida_TALE_ethylene_glycol
|
10.1111/1462-2920.14703
|
2020-01-28 |
|
932 |
B102_unknown
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Pputida_TALE_ethylene_glycol
|
10.1111/1462-2920.14703
|
2020-01-29 |
|
1129 |
BOP1000_aceEF
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CCK2
|
|
2020-09-26 |
|
1006 |
BOP1000_aceEF
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CCK
|
|
2020-03-17 |
|
1775 |
BOP1000_aceEF
|
CCK
|
|
2022-09-02 |
|
993 |
BOP1000_acEF
|
CCK
|
|
2020-03-17 |
|
1124 |
BOP1000_acnB
|
CCK2
|
|
2020-09-26 |
|
1007 |
BOP1000_acnB
|
CCK
|
|
2020-03-17 |
|
1778 |
BOP1000_acnB
|
CCK
|
|
2022-09-02 |
|
1133 |
BOP1000_pfkA
|
CCK2
|
|
2020-09-26 |
|
1000 |
BOP1000_pfkA
|
CCK
|
|
2020-03-17 |
|
1783 |
BOP1000_pfkA
|
CCK
|
|
2022-09-02 |
|
1126 |
BOP1000_rpe
|
CCK2
|
|
2020-09-26 |
|
1005 |
BOP1000_rpe
|
CCK
|
|
2020-03-17 |
|
1785 |
BOP1000_rpe
|
CCK
|
|
2022-09-02 |
|
1121 |
BOP1000_sucB
|
CCK2
|
|
2020-09-26 |
|
998 |
BOP1000_sucB
|
CCK
|
|
2020-03-17 |
|
1782 |
BOP1000_sucB
|
CCK
|
|
2022-09-02 |
|
1755 |
bop27-M9-NC_000913_3gb-37
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C13
|
|
2022-09-01 |
|
761 |
bop27-M9-NC_000913_3gb-37
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C13
|
10.1371/journal.pone.0151130
|
2019-05-24 |
|
762 |
BOP27-M9-NC_000913_3gb-log-37-Glucose2-NH4Cl1-KH2PO43-MgSO4024-O2
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GLU
|
10.1128/AEM.02246-14
|
2019-05-24 |
|
1665 |
BOP_27_aceEF
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CCK2
|
|
2022-01-08 |
|
1002 |
BOP_27_aceEF
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CCK
|
|
2020-03-17 |
|
1776 |
BOP_27_aceEF
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CCK
|
|
2022-09-02 |
|
1003 |
BOP_27_acEF
|
CCK
|
|
2020-03-17 |
|
1123 |
BOP_27_acnB
|
CCK2
|
|
2020-09-26 |
|
997 |
BOP_27_acnB
|
CCK
|
|
2020-03-17 |
|
1779 |
BOP_27_acnB
|
CCK
|
|
2022-09-02 |
|
1120 |
BOP_27_pfkA
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CCK2
|
|
2020-09-26 |
|
992 |
BOP_27_pfkA
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CCK
|
|
2020-03-17 |
|
1787 |
BOP_27_pfkA
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CCK
|
|
2022-09-02 |
|
1128 |
BOP_27_rpe
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CCK2
|
|
2020-09-26 |
|
999 |
BOP_27_rpe
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CCK
|
|
2020-03-17 |
|
1784 |
BOP_27_rpe
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CCK
|
|
2022-09-02 |
|
1122 |
BOP_27_sucB
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CCK2
|
|
2020-09-26 |
|
995 |
BOP_27_sucB
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CCK
|
|
2020-03-17 |
|
1781 |
BOP_27_sucB
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CCK
|
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2022-09-02 |
|
269 |
C13
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C13
|
10.1371/journal.pone.0151130
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2017-05-04 |
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1715 |
C13
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C13
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2022-08-02 |
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1037 |
C321_A_earlyfix
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C321
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10.1073/pnas.1715530115
|
2020-05-02 |
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499 |
CCK evo
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CCK
|
|
2018-03-19 |
|
500 |
CCK gnd
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CCK
|
10.3389/fmicb.2018.01793
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2018-03-19 |
|
504 |
CCK pgi
|
CCK
|
10.1128/AEM.00823-18
|
2018-03-20 |
|
502 |
CCK pts
|
CCK
|
10.1016/j.ymben.2018.06.005
|
2018-03-19 |
|
501 |
CCK sdh
|
CCK
|
10.3389/fmicb.2018.01793
|
2018-03-19 |
|
503 |
CCK tpi
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CCK
|
|
2018-03-19 |
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2100 |
CoCl2_tolerance
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Horinouchi_T_2017
|
10.1038/s41598-017-14335-7
|
2023-03-25 |
|
2096 |
CPC_tolerance
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Horinouchi_T_2017
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10.1038/s41598-017-14335-7
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2023-03-25 |
|
2099 |
Crotonic-acid-Na_tolerance
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Horinouchi_T_2017
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10.1038/s41598-017-14335-7
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2023-03-25 |
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738 |
D-2-deoxyribose
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Enzyme Promiscuity Novel Substrates PALE ALE
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10.15252/msb.20188462
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2019-04-01 |
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736 |
D-arabinose
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Enzyme Promiscuity Novel Substrates PALE ALE
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10.15252/msb.20188462
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2019-04-01 |
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739 |
D-lyxose
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Enzyme Promiscuity Novel Substrates PALE ALE
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10.15252/msb.20188462
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2019-04-01 |
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1140 |
delta_dnaQ
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gRALE_MG1655
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|
2020-11-11 |
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2036 |
E12
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Swings_T_2017
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|
2023-01-20 |
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2033 |
E14
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Swings_T_2017
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2023-01-20 |
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2032 |
E19
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Swings_T_2017
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2023-01-20 |
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2038 |
E2
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Swings_T_2017
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10.7554/eLife.22939
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2023-01-20 |
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2035 |
E20
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Swings_T_2017
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2023-01-20 |
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2034 |
E5
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Swings_T_2017
|
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2023-01-20 |
|
2037 |
E9
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Swings_T_2017
|
|
2023-01-20 |
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1723 |
ECNR2_1
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C321
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2022-08-02 |
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2166 |
Ecoli_acetate_utilization
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Wonjae_Seong_2020
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10.1016/j.ymben.2020.09.005
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2023-06-26 |
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2076 |
Ecoli_amikasin_resistance
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Bram_Bergh_2016
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10.1038/nmicrobiol.2016.20
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2023-03-16 |
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2066 |
Ecoli_BCHAs_tolerance
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Baowei_Wang_2020
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10.1007/s00253-020-10507-0
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2023-02-20 |
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2068 |
Ecoli_BW25113_MeOH_growth
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Frederic_Chen_2020
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10.1016/j.cell.2020.07.010
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2023-02-22 |
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2055 |
Ecoli_Copper_resistance
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Sada_M_2022
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10.3390/antibiotics11060711
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2023-02-01 |
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2072 |
Ecoli_copper_resistant
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Pauline_Bleichert_2020
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10.1128/AEM.01788-20
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2023-03-16 |
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2127 |
Ecoli_EDP_growth
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YeEun_Kim_2022
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10.1186/s13068-022-02219-6
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2023-04-28 |
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1009 |
Ecoli_Ethanol_Stress_ALE
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E.coli Ethanol Stress
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10.1186/s12862-015-0454-6
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2020-03-20 |
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2039 |
Ecoli_growing_on_methanol
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Philipp_Keller_2022
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https://doi.org/10.1038/s41467-022-32744-9
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2023-01-20 |
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2069 |
Ecoli_isoprenol_tolerance
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Heiko_Babel_2020
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10.1186/s13068-020-01825-6
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2023-02-22 |
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2165 |
Ecoli_phage_coevolution
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Elizabeth_Perry_2015
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10.1371/journal.pone.0130639
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2023-06-26 |
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2070 |
Ecoli_Vanillin_resistance
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Calum_Pattrick_2019
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10.1128/mSystems.00163-19
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2023-03-15 |
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1146 |
EG_pCA24N-fucO
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Ecoli_ethylene_glycol_adaption
|
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2020-11-24 |
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2122 |
Enterococcus_faecium
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Eleftheria_P_2023
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10.1016/j.nbt.2023.03.001
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2023-04-19 |
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490 |
Epistasis2011
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Epistasis
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10.1126/science.1203799
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2018-03-11 |
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1132 |
evo
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CCK2
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2020-09-26 |
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994 |
evo
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CCK
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2020-03-17 |
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1772 |
evo
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CCK
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2022-09-02 |
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1142 |
gallium-nitrate
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Ecoli_gallium_resistance
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10.1093/emph/eoz025
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2020-11-16 |
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1284 |
glc_amp
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Ecoli_antibResist_metabol
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10.15252/msb.20167028
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2021-03-29 |
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1281 |
glc_chl
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Ecoli_antibResist_metabol
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10.15252/msb.20167028
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2021-03-29 |
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1286 |
glc_nor
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Ecoli_antibResist_metabol
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10.15252/msb.20167028
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2021-03-29 |
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1288 |
glc_withoutAntibiotic
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Ecoli_antibResist_metabol
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10.15252/msb.20167028
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2021-03-29 |
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1724 |
GLU
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GLU
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2022-08-02 |
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2129 |
glucose_utilizingD
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Christopher_2022
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10.1016/j.ymben.2022.10.016
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2023-05-01 |
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2130 |
glucose_utilizingE
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Christopher_2022
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10.1016/j.ymben.2022.10.016
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2023-05-01 |
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2132 |
glucose_utilizingF
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Christopher_2022
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10.1016/j.ymben.2022.10.016
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2023-05-01 |
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2064 |
glutarate_production
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Carina_Prell_2021
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10.1186/s12934-021-01586-3
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2023-02-13 |
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2025 |
glycerol
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Kangsan_Kim_2022
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10.1016/j.ymben.2021.11.004
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2023-01-17 |
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663 |
Glycerol 2006
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GLY
|
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2018-11-19 |
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1127 |
gnd
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CCK2
|
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2020-09-26 |
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991 |
gnd
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CCK
|
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2020-03-17 |
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1780 |
gnd
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CCK
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2022-09-02 |
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1508 |
Goldberg_MMV009063
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MMV
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10.1126/science.aan4472
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2021-04-18 |
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GYD
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GYD
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10.1128/AEM.03115-16
10.1186/s12864-020-06920-4
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2019-02-27 |
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288 |
ILT DH1
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ILT
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10.1186/s12934-017-0819-1
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2017-07-01 |
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120 |
ILT mg1655
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ILT
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10.1186/s12934-017-0819-1
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2016-09-27 |
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2065 |
Indole_resistance
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Tatjana_Walter_2020
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10.3390/microorganisms8121945
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2023-02-14 |
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1036 |
Iron-ALE
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OxyR
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10.1093/molbev/msz251
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2020-05-02 |
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2062 |
isobutanol_tolerance
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Jaya_Gupta_2020
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10.1038/s41598-020-67635-w
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2023-02-09 |
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930 |
Isolate_E11_Stuttgart
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Pputida_TALE_ethylene_glycol
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10.1111/1462-2920.14703
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2020-01-28 |
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929 |
Isolate_E12_Stuttgart
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Pputida_TALE_ethylene_glycol
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10.1111/1462-2920.14703
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2020-01-28 |
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931 |
Isolate_E13_Stuttgart
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Pputida_TALE_ethylene_glycol
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10.1111/1462-2920.14703
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2020-01-28 |
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926 |
Isolate_E61_Aachen
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Pputida_TALE_ethylene_glycol
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10.1111/1462-2920.14703
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2020-01-28 |
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927 |
Isolate_E62_Aachen
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Pputida_TALE_ethylene_glycol
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10.1111/1462-2920.14703
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2020-01-28 |
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1248 |
Isoprenol_TALE
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Ecoli_Isoprenol_TALE
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2021-02-03 |
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2060 |
Isopropanol_tolerance
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Takaaki_Horinouchi_2017
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10.1016/j.jbiotec.2017.06.408
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2023-02-09 |
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Isopropanol_tolerance_of_Escherichia_coli
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Isopropanol tolerance of Escherichia coli
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10.1016/j.jbiotec.2017.06.408
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2020-03-09 |
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JCL260__isobutanol_production_host-M9-MG1655gbk
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isobutanol-resistant Ecoli
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10.1038/msb.2010.98
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2020-04-29 |
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2097 |
KCL_tolerance
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Horinouchi_T_2017
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10.1038/s41598-017-14335-7
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2023-03-25 |
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1113 |
KT2440_NRELM9_GalETKM_galactose_30
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Pputida_carbon_ALE_2
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10.1021/acssuschemeng.1c03765
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2020-07-28 |
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1274 |
KT2440_NRELM9_GalETKM_galactose_30
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Pputida_carbon_ALE
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10.1021/acssuschemeng.1c03765
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2021-03-19 |
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1718 |
KT2440_NRELM9_Glc_Et3NH_30
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Pputida_IL_TALE
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2022-08-02 |
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829 |
KT2440_NRELM9_Glc_Flight_30
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Pputida_IL_TALE
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2019-08-24 |
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1719 |
KT2440_NRELM9_Glc_IL0_30
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Pputida_IL_TALE
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2022-08-02 |
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1720 |
KT2440_NRELM9_Glc_Mixed_30
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Pputida_IL_TALE
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2022-08-02 |
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1018 |
KT2440_NRELM9_Glc_Mixed_IL_30
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Pputida_IL_TALE
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2020-04-14 |
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1023 |
KT2440_NRELM9_Glc_no_IL_30
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Pputida_IL_TALE
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2020-04-15 |
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1721 |
KT2440_NRELM9_Glc_TEA_30
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Pputida_IL_TALE
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2022-08-02 |
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1017 |
KT2440_NRELM9_Glc_TEA_HS_30
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Pputida_IL_TALE
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2020-04-14 |
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1019 |
KT2440_NRELM9_Glc_TEOH_OAc_30
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Pputida_IL_TALE
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2020-04-14 |
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1112 |
KT2440_NRELM9_XylD_xylose_30
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Pputida_carbon_ALE_2
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10.1021/acssuschemeng.1c03765
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2020-07-28 |
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1275 |
KT2440_NRELM9_XylD_xylose_30
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Pputida_carbon_ALE
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10.1021/acssuschemeng.1c03765
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2021-03-19 |
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2094 |
L-Lactate_tolerance
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Horinouchi_T_2017
|
10.1038/s41598-017-14335-7
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2023-03-25 |
|
2093 |
L-Malate_tolerance
|
Horinouchi_T_2017
|
10.1038/s41598-017-14335-7
|
2023-03-25 |
|
2151 |
Lactic_acid_tolerance
|
Byeong_Jang_2021
|
10.3390/jof7110928
|
2023-05-15 |
|
2123 |
Lactiplantibacillus_plantarum
|
Eleftheria_P_2023
|
10.1016/j.nbt.2023.03.001
|
2023-04-19 |
|
2111 |
Lactococcus_lactis_ferricyanide
|
Liuyan_Gu_2023
|
10.1111/1751-7915.14229
|
2023-04-03 |
|
2073 |
long
|
Vishwa_Patel_2021
|
10.7554/eLife.70931
|
2023-03-16 |
|
2075 |
Lon_knockout
|
Vishwa_Patel_2021
|
|
2023-03-16 |
|
304 |
LTEE
|
LTEE
|
10.1038/nature18959
|
2017-08-05 |
|
350 |
LTEE ARA
|
LTEE
|
10.1038/nature18959
|
2017-09-25 |
|
1714 |
LTEE_Ara
|
LTEE
|
|
2022-08-02 |
|
735 |
m-tartrate
|
Enzyme Promiscuity Novel Substrates PALE ALE
|
10.15252/msb.20188462
|
2019-04-01 |
|
2054 |
Magnetite_Nanoparticle_Resistance
|
Akamu_J_Ewunkem_2021
|
10.3390/nano11030790
|
2023-02-01 |
|
2051 |
Manifold0-100gml-1mgml
|
Baym_M_2016
|
|
2023-01-26 |
|
2048 |
Manifold0-10gml-1mgml
|
Baym_M_2016
|
|
2023-01-26 |
|
2049 |
Manifold0-1gml-1mgml
|
Baym_M_2016
|
|
2023-01-26 |
|
2050 |
Manifold0-1mgml
|
Baym_M_2016
|
|
2023-01-26 |
|
2067 |
Methanol_Growth
|
Guido_Hennig_2020
|
10.3390/ijms21103617
|
2023-02-20 |
|
2095 |
Methylglyoxal_tolerance
|
Horinouchi_T_2017
|
10.1038/s41598-017-14335-7
|
2023-03-25 |
|
1156 |
MG1655-blaTEM1_ceftazidime
|
Ecoli_resistance_caz
|
10.1038/s41559-016-0010
|
2020-11-26 |
|
1152 |
MG1655-blaTEM1_untreated
|
Ecoli_resistance_caz
|
10.1038/s41559-016-0010
|
2020-11-26 |
|
1237 |
MG1655-delta-mutS_nor_125
|
Ecoli_resistance_norfloxacin
|
10.1073/pnas.1601208113
|
2021-01-20 |
|
1217 |
MG1655-delta-mutS_nor_25
|
Ecoli_resistance_norfloxacin
|
10.1073/pnas.1601208113
|
2021-01-20 |
|
1229 |
MG1655-delta-mutS_nor_375
|
Ecoli_resistance_norfloxacin
|
10.1073/pnas.1601208113
|
2021-01-20 |
|
1220 |
MG1655-delta-mutS_nor_50
|
Ecoli_resistance_norfloxacin
|
10.1073/pnas.1601208113
|
2021-01-20 |
|
1239 |
MG1655-delta-mutS_nor_625
|
Ecoli_resistance_norfloxacin
|
10.1073/pnas.1601208113
|
2021-01-20 |
|
1228 |
MG1655-delta-mutS_nor_75
|
Ecoli_resistance_norfloxacin
|
10.1073/pnas.1601208113
|
2021-01-20 |
|
1227 |
MG1655-delta-mutS_nor_875
|
Ecoli_resistance_norfloxacin
|
10.1073/pnas.1601208113
|
2021-01-20 |
|
1233 |
MG1655-delta-mutS_untreated
|
Ecoli_resistance_norfloxacin
|
10.1073/pnas.1601208113
|
2021-01-20 |
|
1238 |
MG1655-delta-mutY_H2O2_20mM
|
Ecoli_resistance_norfloxacin
|
10.1073/pnas.1601208113
|
2021-01-20 |
|
1224 |
MG1655-delta-mutY_nor_125
|
Ecoli_resistance_norfloxacin
|
10.1073/pnas.1601208113
|
2021-01-20 |
|
1222 |
MG1655-delta-mutY_nor_25
|
Ecoli_resistance_norfloxacin
|
10.1073/pnas.1601208113
|
2021-01-20 |
|
1232 |
MG1655-delta-mutY_nor_3125
|
Ecoli_resistance_norfloxacin
|
10.1073/pnas.1601208113
|
2021-01-20 |
|
1219 |
MG1655-delta-mutY_nor_375
|
Ecoli_resistance_norfloxacin
|
10.1073/pnas.1601208113
|
2021-01-20 |
|
1218 |
MG1655-delta-mutY_nor_50
|
Ecoli_resistance_norfloxacin
|
10.1073/pnas.1601208113
|
2021-01-20 |
|
1225 |
MG1655-delta-mutY_nor_75
|
Ecoli_resistance_norfloxacin
|
10.1073/pnas.1601208113
|
2021-01-20 |
|
1226 |
MG1655-delta-mutY_nor_875
|
Ecoli_resistance_norfloxacin
|
10.1073/pnas.1601208113
|
2021-01-20 |
|
1223 |
MG1655-delta-mutY_untreated
|
Ecoli_resistance_norfloxacin
|
10.1073/pnas.1601208113
|
2021-01-20 |
|
1153 |
MG1655-pBGT_ceftazidime
|
Ecoli_resistance_caz
|
10.1038/s41559-016-0010
|
2020-11-26 |
|
1155 |
MG1655-pBGT_untreated
|
Ecoli_resistance_caz
|
10.1038/s41559-016-0010
|
2020-11-26 |
|
1200 |
MG1655-RK2_ampicillin
|
Ecoli_resistance_tet_intragenCoevol
|
10.1038/s41559-017-0242-3
|
2021-01-06 |
|
1202 |
MG1655-RK2_ampicillin_tetracyclin
|
Ecoli_resistance_tet_intragenCoevol
|
10.1038/s41559-017-0242-3
|
2021-01-06 |
|
1203 |
MG1655-RK2_ampicillin_tetracyclin_cycling
|
Ecoli_resistance_tet_intragenCoevol
|
10.1038/s41559-017-0242-3
|
2021-01-06 |
|
1204 |
MG1655-RK2_tetracyclin
|
Ecoli_resistance_tet_intragenCoevol
|
10.1038/s41559-017-0242-3
|
2021-01-06 |
|
1205 |
MG1655-RK2_untreated
|
Ecoli_resistance_tet_intragenCoevol
|
10.1038/s41559-017-0242-3
|
2021-01-06 |
|
1150 |
MG1655_anchestor
|
Ecoli_resistance_ChlDoxTri
|
10.1038/ng.1034
|
2020-11-24 |
|
1151 |
MG1655_ceftazidime
|
Ecoli_resistance_caz
|
10.1038/s41559-016-0010
|
2020-11-26 |
|
1149 |
MG1655_chloramphenicol
|
Ecoli_resistance_ChlDoxTri
|
10.1038/ng.1034
|
2020-11-24 |
|
1147 |
MG1655_doxycycline
|
Ecoli_resistance_ChlDoxTri
|
10.1038/ng.1034
|
2020-11-24 |
|
1221 |
MG1655_nor_125
|
Ecoli_resistance_norfloxacin
|
10.1073/pnas.1601208113
|
2021-01-20 |
|
1234 |
MG1655_nor_25
|
Ecoli_resistance_norfloxacin
|
10.1073/pnas.1601208113
|
2021-01-20 |
|
1231 |
MG1655_nor_375
|
Ecoli_resistance_norfloxacin
|
10.1073/pnas.1601208113
|
2021-01-20 |
|
1216 |
MG1655_nor_50
|
Ecoli_resistance_norfloxacin
|
10.1073/pnas.1601208113
|
2021-01-20 |
|
1236 |
MG1655_nor_625
|
Ecoli_resistance_norfloxacin
|
10.1073/pnas.1601208113
|
2021-01-20 |
|
1230 |
MG1655_nor_75
|
Ecoli_resistance_norfloxacin
|
10.1073/pnas.1601208113
|
2021-01-20 |
|
1235 |
MG1655_nor_875
|
Ecoli_resistance_norfloxacin
|
10.1073/pnas.1601208113
|
2021-01-20 |
|
1250 |
MG1655_pBADmutS_agarPlate
|
Ecoli_rangeExp
|
10.1534/genetics.117.300144
|
2021-03-02 |
|
1249 |
MG1655_pBADmutS_chemostat
|
Ecoli_rangeExp
|
10.1534/genetics.117.300144
|
2021-03-02 |
|
1148 |
MG1655_trimethoprim
|
Ecoli_resistance_ChlDoxTri
|
10.1038/ng.1034
|
2020-11-24 |
|
1154 |
MG1655_untreated
|
Ecoli_resistance_caz
|
10.1038/s41559-016-0010
|
2020-11-26 |
|
1201 |
MG1655_untreated
|
Ecoli_resistance_tet_intragenCoevol
|
10.1038/s41559-017-0242-3
|
2021-01-06 |
|
1215 |
MG1655_untreated
|
Ecoli_resistance_norfloxacin
|
10.1073/pnas.1601208113
|
2021-01-20 |
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737 |
monomethyl succinate
|
Enzyme Promiscuity Novel Substrates PALE ALE
|
10.15252/msb.20188462
|
2019-04-01 |
|
2101 |
n-buthanol_tolerance
|
Horinouchi_T_2017
|
10.1038/s41598-017-14335-7
|
2023-03-25 |
|
2102 |
Na2CO3_tolerance
|
Horinouchi_T_2017
|
10.1038/s41598-017-14335-7
|
2023-03-25 |
|
2098 |
NaCl_tolerance
|
Horinouchi_T_2017
|
10.1038/s41598-017-14335-7
|
2023-03-25 |
|
1516 |
ndh-cydB-appC
|
EEP
|
10.1038/s41467-022-30877-5
|
2021-04-20 |
|
1518 |
ndh-cyoB
|
EEP
|
10.1038/s41467-022-30877-5
|
2021-04-20 |
|
1515 |
nuoB-cydB-appC
|
EEP
|
10.1038/s41467-022-30877-5
|
2021-04-20 |
|
1514 |
nuoB-cyoB
|
EEP
|
10.1038/s41467-022-30877-5
|
2021-04-20 |
|
2063 |
Oxidative_Stress_Vitamin_K2
|
Yue_Liu_2021
|
10.3389/fmicb.2021.746770
|
2023-02-09 |
|
1034 |
OxidizeME_PQ3
|
OxidizeME
|
10.1073/pnas.1905039116
|
2020-04-29 |
|
2121 |
Pediococcus_pentosaceus
|
Eleftheria_P_2023
|
10.1016/j.nbt.2023.03.001
|
2023-04-19 |
|
294 |
PGI
|
PGI
|
10.1371/journal.pgen.1001186
|
2017-07-14 |
|
1131 |
pgi
|
CCK2
|
|
2020-09-26 |
|
1004 |
pgi
|
CCK
|
|
2020-03-17 |
|
1773 |
pgi
|
CCK
|
|
2022-09-02 |
|
1196 |
pgiBME
|
SvNS
|
|
2020-12-21 |
|
1199 |
pgiHSA
|
SvNS
|
|
2020-12-21 |
|
1194 |
pgiKO
|
SvNS
|
|
2020-12-21 |
|
1191 |
pgiPAE
|
SvNS
|
|
2020-12-21 |
|
1192 |
pgiVCH
|
SvNS
|
|
2020-12-21 |
|
2024 |
Phage_evolve_OmpF
|
JUSTIN_R_MEYER_2012
|
|
2023-01-17 |
|
2023 |
Phage_not_evolve_OmpF
|
JUSTIN_R_MEYER_2012
|
10.1126/science.1214449
|
2023-01-17 |
|
925 |
Pputida_WT_A
|
Pputida_TALE_ethylene_glycol
|
10.1111/1462-2920.14703
|
2020-01-28 |
|
933 |
Pputida_WT_S
|
Pputida_TALE_ethylene_glycol
|
10.1111/1462-2920.14703
|
2020-01-29 |
|
1134 |
pts
|
CCK2
|
|
2020-09-26 |
|
990 |
pts
|
CCK
|
|
2020-03-17 |
|
1774 |
pts
|
CCK
|
|
2022-09-02 |
|
961 |
PutidaTALE_Coumaric
|
P. putida Hydroxycinnamic TALE
|
10.1016/j.mec.2020.e00143
|
2020-02-23 |
|
959 |
PutidaTALE_coumaric_cou_Fer_mix
|
P. putida Hydroxycinnamic TALE
|
10.1016/j.mec.2020.e00143
|
2020-02-23 |
|
958 |
PutidaTALE_Ferulic
|
P. putida Hydroxycinnamic TALE
|
10.1016/j.mec.2020.e00143
|
2020-02-23 |
|
960 |
PutidaTALE_glucose
|
P. putida Hydroxycinnamic TALE
|
10.1016/j.mec.2020.e00143
|
2020-02-23 |
|
966 |
pvdJ_KO_P_aeruginosa_spent_medium
|
Pyocyanin Resistance TALE
|
10.1371/journal.pgen.1005715
|
2020-03-06 |
|
965 |
pyocyanin_supplemented_medium
|
Pyocyanin Resistance TALE
|
10.1371/journal.pgen.1005715
|
2020-03-06 |
|
1540 |
ROS_eAMP
|
ROS
|
|
2021-06-13 |
|
2071 |
Saureus_copper_resistant
|
Pauline_Bleichert_2020
|
|
2023-03-16 |
|
2085 |
SCFM_ceftazdime_avibactam
|
Pablo_Laborda_2022
|
10.1128/spectrum.00247-22
|
2023-03-20 |
|
2087 |
SCFM_ceftazidime
|
Pablo_Laborda_2022
|
10.1128/spectrum.00247-22
|
2023-03-20 |
|
2088 |
SCFM_tobramycin
|
Pablo_Laborda_2022
|
10.1128/spectrum.00247-22
|
2023-03-20 |
|
1130 |
sdh
|
CCK2
|
|
2020-09-26 |
|
996 |
sdh
|
CCK
|
|
2020-03-17 |
|
1777 |
sdh
|
CCK
|
|
2022-09-02 |
|
67 |
SER
|
SER
|
10.1016/j.ymben.2016.11.008
10.1186/s12864-020-06920-4
|
2016-09-13 |
|
1709 |
SER
|
SER
|
|
2022-08-02 |
|
1522 |
sexual_genderless_strain
|
Ecoli_sexualRecomb_glycerol
|
10.1038/s41467-017-02323-4
|
2021-05-04 |
|
673 |
SNFM2
|
SNFM
|
10.1128/mSystems.00828-19
|
2018-11-30 |
|
795 |
SNFM_STM_1-S_aureus_TCH1516_STM1-MHB-TCH1516_HM_ALE_referencePlusProkka_Jan2019gbk-mid-log-37-SNFM_STM_1
|
SNFM
|
10.1128/mSystems.00828-19
|
2019-06-19 |
|
797 |
SNFM_STM_2-S_aureus_TCH1516_STM2-MHB-TCH1516_HM_ALE_referencePlusProkka_Jan2019gbk-mid-log-37-SNFM_STM_2
|
SNFM
|
10.1128/mSystems.00828-19
|
2019-06-19 |
|
845 |
SNFM_STM_3
|
SNFM
|
10.1128/mSystems.00828-19
|
2019-10-10 |
|
796 |
SNFM_STM_3-S_aureus_TCH1516_STM3-MHB-TCH1516_HM_ALE_referencePlusProkka_Jan2019gbk-mid-log-37-SNFM_STM_3
|
SNFM
|
10.1128/mSystems.00828-19
|
2019-06-19 |
|
1726 |
SNFM_WT
|
SNFM
|
10.1128/mSystems.00828-19
|
2022-08-02 |
|
798 |
SNFM_WT-S_aureus_TCH1516-MHB-TCH1516_HM_ALE_referencePlusProkka_Jan2019gbk-mid-log-37-SNFM_WT
|
SNFM
|
10.1128/mSystems.00828-19
|
2019-06-19 |
|
551 |
SNFR
|
SNFR
|
10.1128/mSystems.00828-19
|
2018-07-30 |
|
672 |
SNFR2
|
SNFR
|
10.1128/mSystems.00828-19
|
2018-11-30 |
|
802 |
SNFR_STR_1-S_aureus_TCH1516_STR1-RPMI-TCH1516_HM_ALE_referencePlusProkka_Jan2019gbk-37-SNFR_STR_1
|
SNFR
|
10.1128/mSystems.00828-19
|
2019-06-19 |
|
803 |
SNFR_STR_4-S_aureus_TCH1516_STR4-RPMI-TCH1516_HM_ALE_referencePlusProkka_Jan2019gbk-37-SNFR_STR_4
|
SNFR
|
10.1128/mSystems.00828-19
|
2019-06-19 |
|
800 |
SNFR_STR_5-S_aureus_TCH1516_STR5-RPMI-TCH1516_HM_ALE_referencePlusProkka_Jan2019gbk-37-SNFR_STR_5
|
SNFR
|
10.1128/mSystems.00828-19
|
2019-06-19 |
|
1725 |
SNFR_WT
|
SNFR
|
10.1128/mSystems.00828-19
|
2022-08-02 |
|
801 |
SNFR_WT-S_aureus_TCH1516-RPMI-TCH1516_HM_ALE_referencePlusProkka_Jan2019gbk-37-SNFR_WT
|
SNFR
|
10.1128/mSystems.00828-19
|
2019-06-19 |
|
2092 |
Sodium-Methacrylate_tolerance
|
Horinouchi_T_2017
|
10.1038/s41598-017-14335-7
|
2023-03-25 |
|
2053 |
Solvent_Tolerance_Pputida
|
Hadiastri_2021
|
https://doi.org/10.1128/AEM.00041-21
|
2023-01-26 |
|
436 |
SSW AC
|
SSW
|
10.1128/AEM.00410-17
|
2018-01-08 |
|
138 |
SSW GLU AC
|
SSW
|
10.1128/AEM.00410-17
|
2016-11-17 |
|
139 |
SSW GLU GLY
|
SSW
|
10.1128/AEM.00410-17
|
2016-11-17 |
|
245 |
SSW GLU XYL
|
SSW
|
10.1128/AEM.00410-17
|
2017-04-14 |
|
438 |
SSW GLY
|
SSW
|
10.1128/AEM.00410-17
|
2018-01-08 |
|
437 |
SSW XYL
|
SSW
|
10.1128/AEM.00410-17
|
2018-01-08 |
|
2022 |
Succinate
|
Kento_Tokuyama_2018
|
https://doi.org/10.1002/bit.26568
|
2023-01-09 |
|
388 |
SYN
|
SYN
|
|
2017-11-18 |
|
1716 |
SYN
|
SYN
|
|
2022-08-02 |
|
1012 |
S_aureus_alone
|
Ford_etal_2016_NatComm
|
10.1038/ncomms13430
|
2020-04-09 |
|
1013 |
S_aureus_with_E_faecalis
|
Ford_etal_2016_NatComm
|
10.1038/ncomms13430
|
2020-04-09 |
|
1711 |
TEE
|
TEE
|
|
2022-08-02 |
|
481 |
TEE
|
TEE
|
10.1073/pnas.1616132114
|
2018-03-01 |
|
483 |
TEE Ara
|
TEE
|
10.1073/pnas.1616132114
|
2018-03-01 |
|
1712 |
TEE_Ara
|
TEE
|
|
2022-08-02 |
|
2061 |
Thermotolerance_and_Autolyze
|
Robin_Dorau_2021
|
10.1128/AEM.01035-21
|
2023-02-09 |
|
485 |
TM GluGLy
|
Thermotoga
|
10.1371/journal.pgen.1003485
|
2018-03-04 |
|
1710 |
TM_GluGly
|
Thermotoga
|
|
2022-08-02 |
|
208 |
TOL 1,2-propanediol
|
E. coli chemical tolerance
|
10.1016/j.ymben.2023.01.012
|
2017-01-31 |
|
195 |
TOL 2,3-butanediol
|
E. coli chemical tolerance
|
10.1016/j.ymben.2023.01.012
|
2017-01-22 |
|
194 |
TOL adipic acid
|
E. coli chemical tolerance
|
10.1016/j.ymben.2023.01.012
|
2017-01-22 |
|
196 |
TOL coumaric acid
|
E. coli chemical tolerance
|
10.1016/j.ymben.2023.01.012
|
2017-01-22 |
|
197 |
TOL glutaric acid
|
E. coli chemical tolerance
|
10.1016/j.ymben.2023.01.012
|
2017-01-22 |
|
198 |
TOL hexamethylenediamine
|
E. coli chemical tolerance
|
10.1016/j.ymben.2023.01.012
|
2017-01-22 |
|
199 |
TOL hexanoic acid
|
E. coli chemical tolerance
|
10.1016/j.ymben.2023.01.012
|
2017-01-22 |
|
200 |
TOL isobutyric acid
|
E. coli chemical tolerance
|
10.1016/j.ymben.2023.01.012
|
2017-01-22 |
|
193 |
TOL n-butanol
|
E. coli chemical tolerance
|
10.1016/j.ymben.2023.01.012
|
2017-01-22 |
|
201 |
TOL octanoic acid
|
E. coli chemical tolerance
|
10.1016/j.ymben.2023.01.012
|
2017-01-22 |
|
207 |
TOL putrescine
|
E. coli chemical tolerance
|
10.1016/j.ymben.2023.01.012
|
2017-01-31 |
|
1850 |
TOL_NaCl
|
E. coli chemical tolerance
|
10.1016/j.ymben.2023.01.012
|
2022-09-19 |
|
1125 |
tpi
|
CCK2
|
|
2020-09-26 |
|
1001 |
tpi
|
CCK
|
|
2020-03-17 |
|
1786 |
tpi
|
CCK
|
|
2022-09-02 |
|
1193 |
tpiHSA
|
SvNS
|
|
2020-12-21 |
|
1198 |
tpiKO
|
SvNS
|
|
2020-12-21 |
|
1197 |
tpiPAE
|
SvNS
|
|
2020-12-21 |
|
1195 |
tpiVCH
|
SvNS
|
|
2020-12-21 |
|
1144 |
untreated
|
Ecoli_gallium_resistance
|
10.1093/emph/eoz025
|
2020-11-16 |
|
1145 |
untreated_pCA24N-fucO
|
Ecoli_ethylene_glycol_adaption
|
|
2020-11-24 |
|
2090 |
Urine_ceftazdime_avibactam
|
Pablo_Laborda_2022
|
10.1128/spectrum.00247-22
|
2023-03-20 |
|
2086 |
Urine_ceftazidime
|
Pablo_Laborda_2022
|
10.1128/spectrum.00247-22
|
2023-03-20 |
|
2089 |
Urine_tobramycin
|
Pablo_Laborda_2022
|
10.1128/spectrum.00247-22
|
2023-03-20 |
|
1014 |
W3110_Acid_Tolerization
|
W3110 Acid Tolerization
|
10.1128/AEM.03494-14
|
2020-04-09 |
|
940 |
W3110_Benzoate_Tolerization_in_LBK
|
W3110 Benzoate Tolerization
|
10.1128/AEM.02736-16
|
2020-02-18 |
|
2131 |
wild_typeA
|
Christopher_2022
|
10.1016/j.ymben.2022.10.016
|
2023-05-01 |
|
2128 |
wild_typeB
|
Christopher_2022
|
10.1016/j.ymben.2022.10.016
|
2023-05-01 |
|
2133 |
wild_typeC
|
Christopher_2022
|
10.1016/j.ymben.2022.10.016
|
2023-05-01 |
|
1507 |
Wirth_MMV011895
|
MMV
|
10.1126/science.aan4472
|
2021-04-18 |
|
1509 |
Wirth_MMV668399_1
|
MMV
|
10.1126/science.aan4472
|
2021-04-18 |
|
1141 |
wt
|
gRALE_MG1655
|
10.3389/fmicb.2018.00427
|
2020-11-11 |
|
967 |
WT_P_aeruginosa_spent_medium
|
Pyocyanin Resistance TALE
|
10.1371/journal.pgen.1005715
|
2020-03-06 |
|
1713 |
Xylose_ALE
|
2017_PNAS_Ecoli_CCR_ALE
|
10.1073/pnas.1700345114
|
2022-08-02 |