ID Experiment Name Project Publication Date
2056 1_4_Butanediol Adipic_Acid_and_1_4_Butanediol 10.3389/fmicb.2020.00382 2023-02-02
1294 1_chemostat Ecoli_SugarSynth_CO2 10.1016/j.cell.2016.05.064 2021-04-14
1292 2_chemostat Ecoli_SugarSynth_CO2 10.1016/j.cell.2016.05.064 2021-04-14
1293 3_chemostat Ecoli_SugarSynth_CO2 10.1016/j.cell.2016.05.064 2021-04-14
50 42C 42C 10.1093/molbev/msu209 2016-09-12
1717 42C 42C 10.1093/molbev/msu209 2022-08-02
740 42C_Tenaillon-Ara-_LTEE_strain_from_generation_2000-DM25-REL606gbk-stationary-42-Glucose0025-NH4Cl1-KH2PO49-MgSO405-O20 42C_Tenaillon 10.1126/science.1212986 2019-04-15
2052 4step0-1gml-10gml-100gml-1mgml Baym_M_2016 10.1126/science.aag0822 2023-01-26
1295 4_chemostat Ecoli_SugarSynth_CO2 10.1016/j.cell.2016.05.064 2021-04-14
1283 ace_amp Ecoli_antibResist_metabol 10.15252/msb.20167028 2021-03-29
1287 ace_chl Ecoli_antibResist_metabol 10.15252/msb.20167028 2021-03-29
1282 ace_nor Ecoli_antibResist_metabol 10.15252/msb.20167028 2021-03-29
1285 ace_withoutAntibiotic Ecoli_antibResist_metabol 10.15252/msb.20167028 2021-03-29
2057 Adipic_Acid Adipic_Acid_and_1_4_Butanediol 10.1016/j.ymben.2021.05.001 2023-02-02
2046 Ag Feng_Dong_2021 10.1111/1462-2920.15854 2023-01-24
2047 AgNPs Feng_Dong_2021 2023-01-24
1008 ALE_Ecoli_Acetate E.coli Acetate 10.1007/s00253-016-7724-0 2020-03-19
2017 ALE_IBA_tolerance Morgan_M_2022 10.1016/j.ymben.2021.11.002 2023-01-05
1727 antibiotic_doxycycline Unconstrained Evolution 10.1038/s41559-016-0050 2022-08-10
2081 antimicrobial_protein_BAC5 Reka_Spohn_2019 10.1038/s41467-019-12364-6 2023-03-17
2078 antimicrobial_protein_CAP18 Reka_Spohn_2019 10.1038/s41467-019-12364-6 2023-03-17
2080 antimicrobial_protein_HBD3 Reka_Spohn_2019 10.1038/s41467-019-12364-6 2023-03-17
2077 antimicrobial_protein_LL37 Reka_Spohn_2019 10.1038/s41467-019-12364-6 2023-03-17
2082 antimicrobial_protein_PEX Reka_Spohn_2019 10.1038/s41467-019-12364-6 2023-03-17
2079 antimicrobial_protein_PR39 Reka_Spohn_2019 10.1038/s41467-019-12364-6 2023-03-17
2084 antimicrobial_protein_PROA Reka_Spohn_2019 10.1038/s41467-019-12364-6 2023-03-17
2083 antimicrobial_protein_PXB Reka_Spohn_2019 10.1038/s41467-019-12364-6 2023-03-17
748 application_of_ALE_to_re-optimize_growth_performance_of_genome-reduced_strain_MS56-M9-MG1655gbk Genome-Reduced Ecoli 10.1038/s41467-019-08888-6 2019-05-01
1523 asexual_strain Ecoli_sexualRecomb_glycerol 10.1038/s41467-017-02323-4 2021-05-04
1251 autotrophic_strain Ecoli_biomass_CO2 10.1016/j.cell.2019.11.009 2021-03-03
547 AUX2 hisD gltA AUX2 10.1371/journal.pcbi.1006213 2018-06-29
548 AUX2 hisD gltB AUX2 10.1371/journal.pcbi.1006213 2018-06-29
549 AUX2 hisD pyrC AUX2 10.1371/journal.pcbi.1006213 2018-06-29
928 B101_unknown Pputida_TALE_ethylene_glycol 10.1111/1462-2920.14703 2020-01-28
932 B102_unknown Pputida_TALE_ethylene_glycol 10.1111/1462-2920.14703 2020-01-29
1006 BOP1000_aceEF CCK 2020-03-17
1129 BOP1000_aceEF CCK2 2020-09-26
1775 BOP1000_aceEF CCK 2022-09-02
993 BOP1000_acEF CCK 2020-03-17
1007 BOP1000_acnB CCK 2020-03-17
1124 BOP1000_acnB CCK2 2020-09-26
1778 BOP1000_acnB CCK 2022-09-02
1000 BOP1000_pfkA CCK 2020-03-17
1133 BOP1000_pfkA CCK2 2020-09-26
1783 BOP1000_pfkA CCK 2022-09-02
1005 BOP1000_rpe CCK 2020-03-17
1126 BOP1000_rpe CCK2 2020-09-26
1785 BOP1000_rpe CCK 2022-09-02
998 BOP1000_sucB CCK 2020-03-17
1121 BOP1000_sucB CCK2 2020-09-26
1782 BOP1000_sucB CCK 2022-09-02
761 bop27-M9-NC_000913_3gb-37 C13 10.1371/journal.pone.0151130 2019-05-24
1755 bop27-M9-NC_000913_3gb-37 C13 2022-09-01
762 BOP27-M9-NC_000913_3gb-log-37-Glucose2-NH4Cl1-KH2PO43-MgSO4024-O2 GLU 10.1128/AEM.02246-14 2019-05-24
1002 BOP_27_aceEF CCK 2020-03-17
1665 BOP_27_aceEF CCK2 2022-01-08
1776 BOP_27_aceEF CCK 2022-09-02
1003 BOP_27_acEF CCK 2020-03-17
997 BOP_27_acnB CCK 2020-03-17
1123 BOP_27_acnB CCK2 2020-09-26
1779 BOP_27_acnB CCK 2022-09-02
992 BOP_27_pfkA CCK 2020-03-17
1120 BOP_27_pfkA CCK2 2020-09-26
1787 BOP_27_pfkA CCK 2022-09-02
999 BOP_27_rpe CCK 2020-03-17
1128 BOP_27_rpe CCK2 2020-09-26
1784 BOP_27_rpe CCK 2022-09-02
995 BOP_27_sucB CCK 2020-03-17
1122 BOP_27_sucB CCK2 2020-09-26
1781 BOP_27_sucB CCK 2022-09-02
2162 BS6633 BS6633_HSTALE 2023-05-16
269 C13 C13 10.1371/journal.pone.0151130 2017-05-04
1715 C13 C13 2022-08-02
1037 C321_A_earlyfix C321 10.1073/pnas.1715530115 2020-05-02
499 CCK evo CCK 2018-03-19
500 CCK gnd CCK 10.3389/fmicb.2018.01793 2018-03-19
504 CCK pgi CCK 10.1128/AEM.00823-18 2018-03-20
502 CCK pts CCK 10.1016/j.ymben.2018.06.005 2018-03-19
501 CCK sdh CCK 10.3389/fmicb.2018.01793 2018-03-19
503 CCK tpi CCK 2018-03-19
2100 CoCl2_tolerance Horinouchi_T_2017 10.1038/s41598-017-14335-7 2023-03-25
2096 CPC_tolerance Horinouchi_T_2017 10.1038/s41598-017-14335-7 2023-03-25
2099 Crotonic-acid-Na_tolerance Horinouchi_T_2017 10.1038/s41598-017-14335-7 2023-03-25
738 D-2-deoxyribose Enzyme Promiscuity Novel Substrates PALE ALE 10.15252/msb.20188462 2019-04-01
736 D-arabinose Enzyme Promiscuity Novel Substrates PALE ALE 10.15252/msb.20188462 2019-04-01
739 D-lyxose Enzyme Promiscuity Novel Substrates PALE ALE 10.15252/msb.20188462 2019-04-01
1140 delta_dnaQ gRALE_MG1655 2020-11-11
2036 E12 Swings_T_2017 2023-01-20
2033 E14 Swings_T_2017 2023-01-20
2032 E19 Swings_T_2017 2023-01-20
2038 E2 Swings_T_2017 10.7554/eLife.22939 2023-01-20
2035 E20 Swings_T_2017 2023-01-20
2034 E5 Swings_T_2017 2023-01-20
2037 E9 Swings_T_2017 2023-01-20
1723 ECNR2_1 C321 2022-08-02
2166 Ecoli_acetate_utilization Wonjae_Seong_2020 10.1016/j.ymben.2020.09.005 2023-06-26
2076 Ecoli_amikasin_resistance Bram_Bergh_2016 10.1038/nmicrobiol.2016.20 2023-03-16
2066 Ecoli_BCHAs_tolerance Baowei_Wang_2020 10.1007/s00253-020-10507-0 2023-02-20
2068 Ecoli_BW25113_MeOH_growth Frederic_Chen_2020 10.1016/j.cell.2020.07.010 2023-02-22
2055 Ecoli_Copper_resistance Sada_M_2022 10.3390/antibiotics11060711 2023-02-01
2072 Ecoli_copper_resistant Pauline_Bleichert_2020 10.1128/AEM.01788-20 2023-03-16
2127 Ecoli_EDP_growth YeEun_Kim_2022 10.1186/s13068-022-02219-6 2023-04-28
1009 Ecoli_Ethanol_Stress_ALE E.coli Ethanol Stress 10.1186/s12862-015-0454-6 2020-03-20
2039 Ecoli_growing_on_methanol Philipp_Keller_2022 https://doi.org/10.1038/s41467-022-32744-9 2023-01-20
2069 Ecoli_isoprenol_tolerance Heiko_Babel_2020 10.1186/s13068-020-01825-6 2023-02-22
2165 Ecoli_phage_coevolution Elizabeth_Perry_2015 10.1371/journal.pone.0130639 2023-06-26
2070 Ecoli_Vanillin_resistance Calum_Pattrick_2019 10.1128/mSystems.00163-19 2023-03-15
1146 EG_pCA24N-fucO Ecoli_ethylene_glycol_adaption 2020-11-24
2122 Enterococcus_faecium Eleftheria_P_2023 10.1016/j.nbt.2023.03.001 2023-04-19
490 Epistasis2011 Epistasis 10.1126/science.1203799 2018-03-11
994 evo CCK 2020-03-17
1132 evo CCK2 2020-09-26
1772 evo CCK 2022-09-02
899 EZR_Evolution minE Evolution 2019-12-09
1142 gallium-nitrate Ecoli_gallium_resistance 10.1093/emph/eoz025 2020-11-16
1284 glc_amp Ecoli_antibResist_metabol 10.15252/msb.20167028 2021-03-29
1281 glc_chl Ecoli_antibResist_metabol 10.15252/msb.20167028 2021-03-29
1286 glc_nor Ecoli_antibResist_metabol 10.15252/msb.20167028 2021-03-29
1288 glc_withoutAntibiotic Ecoli_antibResist_metabol 10.15252/msb.20167028 2021-03-29
1724 GLU GLU 2022-08-02
2129 glucose_utilizingD Christopher_2022 10.1016/j.ymben.2022.10.016 2023-05-01
2130 glucose_utilizingE Christopher_2022 10.1016/j.ymben.2022.10.016 2023-05-01
2132 glucose_utilizingF Christopher_2022 10.1016/j.ymben.2022.10.016 2023-05-01
2064 glutarate_production Carina_Prell_2021 10.1186/s12934-021-01586-3 2023-02-13
2025 glycerol Kangsan_Kim_2022 10.1016/j.ymben.2021.11.004 2023-01-17
663 Glycerol 2006 GLY 2018-11-19
991 gnd CCK 2020-03-17
1127 gnd CCK2 2020-09-26
1780 gnd CCK 2022-09-02
1508 Goldberg_MMV009063 MMV 10.1126/science.aan4472 2021-04-18
682 GYD GYD 10.1128/AEM.03115-16 10.1186/s12864-020-06920-4 2019-02-27
1253 Hydrolysate_TALE_JADR33 Bsubtilis_Hydrolysate 10.1016/j.mec.2023.e00223 2021-03-11
1545 Hydrolysate_TALE_JADR40 Bsubtilis_Hydrolysate 10.1016/j.mec.2023.e00223 2021-08-23
1252 Hydrolysate_TALE_JADR46 Bsubtilis_Hydrolysate 10.1016/j.mec.2023.e00223 2021-03-11
1256 Hydrolysate_TALE_JADR49 Bsubtilis_Hydrolysate 10.1016/j.mec.2023.e00223 2021-03-11
1257 Hydrolysate_TALE_JADR50 Bsubtilis_Hydrolysate 10.1016/j.mec.2023.e00223 2021-03-11
288 ILT DH1 ILT 10.1186/s12934-017-0819-1 2017-07-01
120 ILT mg1655 ILT 10.1186/s12934-017-0819-1 2016-09-27
2065 Indole_resistance Tatjana_Walter_2020 10.3390/microorganisms8121945 2023-02-14
1036 Iron-ALE OxyR 10.1093/molbev/msz251 2020-05-02
2062 isobutanol_tolerance Jaya_Gupta_2020 10.1038/s41598-020-67635-w 2023-02-09
930 Isolate_E11_Stuttgart Pputida_TALE_ethylene_glycol 10.1111/1462-2920.14703 2020-01-28
929 Isolate_E12_Stuttgart Pputida_TALE_ethylene_glycol 10.1111/1462-2920.14703 2020-01-28
931 Isolate_E13_Stuttgart Pputida_TALE_ethylene_glycol 10.1111/1462-2920.14703 2020-01-28
926 Isolate_E61_Aachen Pputida_TALE_ethylene_glycol 10.1111/1462-2920.14703 2020-01-28
927 Isolate_E62_Aachen Pputida_TALE_ethylene_glycol 10.1111/1462-2920.14703 2020-01-28
1248 Isoprenol_TALE Ecoli_Isoprenol_TALE 2021-02-03
2060 Isopropanol_tolerance Takaaki_Horinouchi_2017 10.1016/j.jbiotec.2017.06.408 2023-02-09
968 Isopropanol_tolerance_of_Escherichia_coli Isopropanol tolerance of Escherichia coli 10.1016/j.jbiotec.2017.06.408 2020-03-09
804 J0-D2-M9-minEgb-0-37-Glucose1-NH41-P1-S1-E1 minE coli Evolution 2019-07-08
805 J0-E2-M9-W3110gb-0-37-Glucose1-NH41-P1-S1-E1 minE coli Evolution 2019-07-08
816 J0-F1-M9-minEgb-0-37-Glucose1-NH41-P1-S1-E1 minE coli Evolution 2019-07-08
813 J0-F2-M9-minEgb-0-37-Glucose1-NH41-P1-S1-E1 minE coli Evolution 2019-07-08
815 J17-D2-M9-minEgb-0-37-Glucose1-NH41-P1-S1-E1 minE coli Evolution 2019-07-08
810 J17-E2-M9-W3110gb-0-37-Glucose1-NH41-P1-S1-E1 minE coli Evolution 2019-07-08
817 J17-F1-M9-minEgb-0-37-Glucose1-NH41-P1-S1-E1 minE coli Evolution 2019-07-08
820 J17-F2-M9-minEgb-0-37-Glucose1-NH41-P1-S1-E1 minE coli Evolution 2019-07-08
812 J21-D2-M9-minEgb-0-37-Glucose1-NH41-P1-S1-E1 minE coli Evolution 2019-07-08
809 J21-F2-M9-minEgb-0-37-Glucose1-NH41-P1-S1-E1 minE coli Evolution 2019-07-08
819 J3-D2-M9-minEgb-0-37-Glucose1-NH41-P1-S1-E1 minE coli Evolution 2019-07-08
807 J3-E2-M9-W3110gb-0-37-Glucose1-NH41-P1-S1-E1 minE coli Evolution 2019-07-08
818 J3-F1-M9-minEgb-0-37-Glucose1-NH41-P1-S1-E1 minE coli Evolution 2019-07-08
806 J3-F2-M9-minEgb-0-37-Glucose1-NH41-P1-S1-E1 minE coli Evolution 2019-07-08
811 J8-D2-M9-minEgb-0-37-Glucose1-NH41-P1-S1-E1 minE coli Evolution 2019-07-08
821 J8-E2-M9-W3110gb-0-37-Glucose1-NH41-P1-S1-E1 minE coli Evolution 2019-07-08
808 J8-F1-M9-minEgb-0-37-Glucose1-NH41-P1-S1-E1 minE coli Evolution 2019-07-08
814 J8-F2-M9-minEgb-0-37-Glucose1-NH41-P1-S1-E1 minE coli Evolution 2019-07-08
1035 JCL260__isobutanol_production_host-M9-MG1655gbk isobutanol-resistant Ecoli 10.1038/msb.2010.98 2020-04-29
2097 KCL_tolerance Horinouchi_T_2017 10.1038/s41598-017-14335-7 2023-03-25
1113 KT2440_NRELM9_GalETKM_galactose_30 Pputida_carbon_ALE_2 10.1021/acssuschemeng.1c03765 2020-07-28
1274 KT2440_NRELM9_GalETKM_galactose_30 Pputida_carbon_ALE 10.1021/acssuschemeng.1c03765 2021-03-19
1718 KT2440_NRELM9_Glc_Et3NH_30 Pputida_IL_TALE 2022-08-02
829 KT2440_NRELM9_Glc_Flight_30 Pputida_IL_TALE 2019-08-24
1719 KT2440_NRELM9_Glc_IL0_30 Pputida_IL_TALE 2022-08-02
1720 KT2440_NRELM9_Glc_Mixed_30 Pputida_IL_TALE 2022-08-02
1018 KT2440_NRELM9_Glc_Mixed_IL_30 Pputida_IL_TALE 2020-04-14
1023 KT2440_NRELM9_Glc_no_IL_30 Pputida_IL_TALE 2020-04-15
1721 KT2440_NRELM9_Glc_TEA_30 Pputida_IL_TALE 2022-08-02
1017 KT2440_NRELM9_Glc_TEA_HS_30 Pputida_IL_TALE 2020-04-14
1019 KT2440_NRELM9_Glc_TEOH_OAc_30 Pputida_IL_TALE 2020-04-14
1112 KT2440_NRELM9_XylD_xylose_30 Pputida_carbon_ALE_2 10.1021/acssuschemeng.1c03765 2020-07-28
1275 KT2440_NRELM9_XylD_xylose_30 Pputida_carbon_ALE 10.1021/acssuschemeng.1c03765 2021-03-19
2094 L-Lactate_tolerance Horinouchi_T_2017 10.1038/s41598-017-14335-7 2023-03-25
2093 L-Malate_tolerance Horinouchi_T_2017 10.1038/s41598-017-14335-7 2023-03-25
2151 Lactic_acid_tolerance Byeong_Jang_2021 10.3390/jof7110928 2023-05-15
2123 Lactiplantibacillus_plantarum Eleftheria_P_2023 10.1016/j.nbt.2023.03.001 2023-04-19
2111 Lactococcus_lactis_ferricyanide Liuyan_Gu_2023 10.1111/1751-7915.14229 2023-04-03
904 LB_Evolution minE Evolution 2019-12-12
2073 long Vishwa_Patel_2021 10.7554/eLife.70931 2023-03-16
2075 Lon_knockout Vishwa_Patel_2021 2023-03-16
304 LTEE LTEE 10.1038/nature18959 2017-08-05
350 LTEE ARA LTEE 10.1038/nature18959 2017-09-25
1714 LTEE_Ara LTEE 2022-08-02
735 m-tartrate Enzyme Promiscuity Novel Substrates PALE ALE 10.15252/msb.20188462 2019-04-01
1546 M9H_ALE_JADR33 Bsubtilis_Hydrolysate 10.1016/j.mec.2023.e00223 2021-08-26
1547 M9H_ALE_JADR50 Bsubtilis_Hydrolysate 10.1016/j.mec.2023.e00223 2021-08-26
2054 Magnetite_Nanoparticle_Resistance Akamu_J_Ewunkem_2021 10.3390/nano11030790 2023-02-01
2051 Manifold0-100gml-1mgml Baym_M_2016 2023-01-26
2048 Manifold0-10gml-1mgml Baym_M_2016 2023-01-26
2049 Manifold0-1gml-1mgml Baym_M_2016 2023-01-26
2050 Manifold0-1mgml Baym_M_2016 2023-01-26
2067 Methanol_Growth Guido_Hennig_2020 10.3390/ijms21103617 2023-02-20
2095 Methylglyoxal_tolerance Horinouchi_T_2017 10.1038/s41598-017-14335-7 2023-03-25
1156 MG1655-blaTEM1_ceftazidime Ecoli_resistance_caz 10.1038/s41559-016-0010 2020-11-26
1152 MG1655-blaTEM1_untreated Ecoli_resistance_caz 10.1038/s41559-016-0010 2020-11-26
1237 MG1655-delta-mutS_nor_125 Ecoli_resistance_norfloxacin 10.1073/pnas.1601208113 2021-01-20
1217 MG1655-delta-mutS_nor_25 Ecoli_resistance_norfloxacin 10.1073/pnas.1601208113 2021-01-20
1229 MG1655-delta-mutS_nor_375 Ecoli_resistance_norfloxacin 10.1073/pnas.1601208113 2021-01-20
1220 MG1655-delta-mutS_nor_50 Ecoli_resistance_norfloxacin 10.1073/pnas.1601208113 2021-01-20
1239 MG1655-delta-mutS_nor_625 Ecoli_resistance_norfloxacin 10.1073/pnas.1601208113 2021-01-20
1228 MG1655-delta-mutS_nor_75 Ecoli_resistance_norfloxacin 10.1073/pnas.1601208113 2021-01-20
1227 MG1655-delta-mutS_nor_875 Ecoli_resistance_norfloxacin 10.1073/pnas.1601208113 2021-01-20
1233 MG1655-delta-mutS_untreated Ecoli_resistance_norfloxacin 10.1073/pnas.1601208113 2021-01-20
1238 MG1655-delta-mutY_H2O2_20mM Ecoli_resistance_norfloxacin 10.1073/pnas.1601208113 2021-01-20
1224 MG1655-delta-mutY_nor_125 Ecoli_resistance_norfloxacin 10.1073/pnas.1601208113 2021-01-20
1222 MG1655-delta-mutY_nor_25 Ecoli_resistance_norfloxacin 10.1073/pnas.1601208113 2021-01-20
1232 MG1655-delta-mutY_nor_3125 Ecoli_resistance_norfloxacin 10.1073/pnas.1601208113 2021-01-20
1219 MG1655-delta-mutY_nor_375 Ecoli_resistance_norfloxacin 10.1073/pnas.1601208113 2021-01-20
1218 MG1655-delta-mutY_nor_50 Ecoli_resistance_norfloxacin 10.1073/pnas.1601208113 2021-01-20
1225 MG1655-delta-mutY_nor_75 Ecoli_resistance_norfloxacin 10.1073/pnas.1601208113 2021-01-20
1226 MG1655-delta-mutY_nor_875 Ecoli_resistance_norfloxacin 10.1073/pnas.1601208113 2021-01-20
1223 MG1655-delta-mutY_untreated Ecoli_resistance_norfloxacin 10.1073/pnas.1601208113 2021-01-20
1153 MG1655-pBGT_ceftazidime Ecoli_resistance_caz 10.1038/s41559-016-0010 2020-11-26
1155 MG1655-pBGT_untreated Ecoli_resistance_caz 10.1038/s41559-016-0010 2020-11-26
1200 MG1655-RK2_ampicillin Ecoli_resistance_tet_intragenCoevol 10.1038/s41559-017-0242-3 2021-01-06
1202 MG1655-RK2_ampicillin_tetracyclin Ecoli_resistance_tet_intragenCoevol 10.1038/s41559-017-0242-3 2021-01-06
1203 MG1655-RK2_ampicillin_tetracyclin_cycling Ecoli_resistance_tet_intragenCoevol 10.1038/s41559-017-0242-3 2021-01-06
1204 MG1655-RK2_tetracyclin Ecoli_resistance_tet_intragenCoevol 10.1038/s41559-017-0242-3 2021-01-06
1205 MG1655-RK2_untreated Ecoli_resistance_tet_intragenCoevol 10.1038/s41559-017-0242-3 2021-01-06
1150 MG1655_anchestor Ecoli_resistance_ChlDoxTri 10.1038/ng.1034 2020-11-24
1151 MG1655_ceftazidime Ecoli_resistance_caz 10.1038/s41559-016-0010 2020-11-26
1149 MG1655_chloramphenicol Ecoli_resistance_ChlDoxTri 10.1038/ng.1034 2020-11-24
1147 MG1655_doxycycline Ecoli_resistance_ChlDoxTri 10.1038/ng.1034 2020-11-24
1221 MG1655_nor_125 Ecoli_resistance_norfloxacin 10.1073/pnas.1601208113 2021-01-20
1234 MG1655_nor_25 Ecoli_resistance_norfloxacin 10.1073/pnas.1601208113 2021-01-20
1231 MG1655_nor_375 Ecoli_resistance_norfloxacin 10.1073/pnas.1601208113 2021-01-20
1216 MG1655_nor_50 Ecoli_resistance_norfloxacin 10.1073/pnas.1601208113 2021-01-20
1236 MG1655_nor_625 Ecoli_resistance_norfloxacin 10.1073/pnas.1601208113 2021-01-20
1230 MG1655_nor_75 Ecoli_resistance_norfloxacin 10.1073/pnas.1601208113 2021-01-20
1235 MG1655_nor_875 Ecoli_resistance_norfloxacin 10.1073/pnas.1601208113 2021-01-20
1250 MG1655_pBADmutS_agarPlate Ecoli_rangeExp 10.1534/genetics.117.300144 2021-03-02
1249 MG1655_pBADmutS_chemostat Ecoli_rangeExp 10.1534/genetics.117.300144 2021-03-02
1148 MG1655_trimethoprim Ecoli_resistance_ChlDoxTri 10.1038/ng.1034 2020-11-24
1154 MG1655_untreated Ecoli_resistance_caz 10.1038/s41559-016-0010 2020-11-26
1201 MG1655_untreated Ecoli_resistance_tet_intragenCoevol 10.1038/s41559-017-0242-3 2021-01-06
1215 MG1655_untreated Ecoli_resistance_norfloxacin 10.1073/pnas.1601208113 2021-01-20
737 monomethyl succinate Enzyme Promiscuity Novel Substrates PALE ALE 10.15252/msb.20188462 2019-04-01
903 MOPS_Evolution minE Evolution 2019-12-12
2101 n-buthanol_tolerance Horinouchi_T_2017 10.1038/s41598-017-14335-7 2023-03-25
2102 Na2CO3_tolerance Horinouchi_T_2017 10.1038/s41598-017-14335-7 2023-03-25
2098 NaCl_tolerance Horinouchi_T_2017 10.1038/s41598-017-14335-7 2023-03-25
1516 ndh-cydB-appC EEP 10.1038/s41467-022-30877-5 2021-04-20
1518 ndh-cyoB EEP 10.1038/s41467-022-30877-5 2021-04-20
1515 nuoB-cydB-appC EEP 10.1038/s41467-022-30877-5 2021-04-20
1514 nuoB-cyoB EEP 10.1038/s41467-022-30877-5 2021-04-20
2063 Oxidative_Stress_Vitamin_K2 Yue_Liu_2021 10.3389/fmicb.2021.746770 2023-02-09
1034 OxidizeME_PQ3 OxidizeME 10.1073/pnas.1905039116 2020-04-29
2121 Pediococcus_pentosaceus Eleftheria_P_2023 10.1016/j.nbt.2023.03.001 2023-04-19
294 PGI PGI 10.1371/journal.pgen.1001186 2017-07-14
1004 pgi CCK 2020-03-17
1131 pgi CCK2 2020-09-26
1773 pgi CCK 2022-09-02
1196 pgiBME SvNS 2020-12-21
1199 pgiHSA SvNS 2020-12-21
1194 pgiKO SvNS 2020-12-21
1191 pgiPAE SvNS 2020-12-21
1192 pgiVCH SvNS 2020-12-21
2024 Phage_evolve_OmpF JUSTIN_R_MEYER_2012 2023-01-17
2023 Phage_not_evolve_OmpF JUSTIN_R_MEYER_2012 10.1126/science.1214449 2023-01-17
925 Pputida_WT_A Pputida_TALE_ethylene_glycol 10.1111/1462-2920.14703 2020-01-28
933 Pputida_WT_S Pputida_TALE_ethylene_glycol 10.1111/1462-2920.14703 2020-01-29
990 pts CCK 2020-03-17
1134 pts CCK2 2020-09-26
1774 pts CCK 2022-09-02
961 PutidaTALE_Coumaric P. putida Hydroxycinnamic TALE 10.1016/j.mec.2020.e00143 2020-02-23
959 PutidaTALE_coumaric_cou_Fer_mix P. putida Hydroxycinnamic TALE 10.1016/j.mec.2020.e00143 2020-02-23
958 PutidaTALE_Ferulic P. putida Hydroxycinnamic TALE 10.1016/j.mec.2020.e00143 2020-02-23
960 PutidaTALE_glucose P. putida Hydroxycinnamic TALE 10.1016/j.mec.2020.e00143 2020-02-23
966 pvdJ_KO_P_aeruginosa_spent_medium Pyocyanin Resistance TALE 10.1371/journal.pgen.1005715 2020-03-06
965 pyocyanin_supplemented_medium Pyocyanin Resistance TALE 10.1371/journal.pgen.1005715 2020-03-06
1540 ROS_eAMP ROS 2021-06-13
2071 Saureus_copper_resistant Pauline_Bleichert_2020 2023-03-16
2085 SCFM_ceftazdime_avibactam Pablo_Laborda_2022 10.1128/spectrum.00247-22 2023-03-20
2087 SCFM_ceftazidime Pablo_Laborda_2022 10.1128/spectrum.00247-22 2023-03-20
2088 SCFM_tobramycin Pablo_Laborda_2022 10.1128/spectrum.00247-22 2023-03-20
996 sdh CCK 2020-03-17
1130 sdh CCK2 2020-09-26
1777 sdh CCK 2022-09-02
67 SER SER 10.1016/j.ymben.2016.11.008 10.1186/s12864-020-06920-4 2016-09-13
1709 SER SER 2022-08-02
1522 sexual_genderless_strain Ecoli_sexualRecomb_glycerol 10.1038/s41467-017-02323-4 2021-05-04
673 SNFM2 SNFM 10.1128/mSystems.00828-19 2018-11-30
795 SNFM_STM_1-S_aureus_TCH1516_STM1-MHB-TCH1516_HM_ALE_referencePlusProkka_Jan2019gbk-mid-log-37-SNFM_STM_1 SNFM 10.1128/mSystems.00828-19 2019-06-19
797 SNFM_STM_2-S_aureus_TCH1516_STM2-MHB-TCH1516_HM_ALE_referencePlusProkka_Jan2019gbk-mid-log-37-SNFM_STM_2 SNFM 10.1128/mSystems.00828-19 2019-06-19
845 SNFM_STM_3 SNFM 10.1128/mSystems.00828-19 2019-10-10
796 SNFM_STM_3-S_aureus_TCH1516_STM3-MHB-TCH1516_HM_ALE_referencePlusProkka_Jan2019gbk-mid-log-37-SNFM_STM_3 SNFM 10.1128/mSystems.00828-19 2019-06-19
1726 SNFM_WT SNFM 10.1128/mSystems.00828-19 2022-08-02
798 SNFM_WT-S_aureus_TCH1516-MHB-TCH1516_HM_ALE_referencePlusProkka_Jan2019gbk-mid-log-37-SNFM_WT SNFM 10.1128/mSystems.00828-19 2019-06-19
551 SNFR SNFR 10.1128/mSystems.00828-19 2018-07-30
672 SNFR2 SNFR 10.1128/mSystems.00828-19 2018-11-30
802 SNFR_STR_1-S_aureus_TCH1516_STR1-RPMI-TCH1516_HM_ALE_referencePlusProkka_Jan2019gbk-37-SNFR_STR_1 SNFR 10.1128/mSystems.00828-19 2019-06-19
803 SNFR_STR_4-S_aureus_TCH1516_STR4-RPMI-TCH1516_HM_ALE_referencePlusProkka_Jan2019gbk-37-SNFR_STR_4 SNFR 10.1128/mSystems.00828-19 2019-06-19
800 SNFR_STR_5-S_aureus_TCH1516_STR5-RPMI-TCH1516_HM_ALE_referencePlusProkka_Jan2019gbk-37-SNFR_STR_5 SNFR 10.1128/mSystems.00828-19 2019-06-19
1725 SNFR_WT SNFR 10.1128/mSystems.00828-19 2022-08-02
801 SNFR_WT-S_aureus_TCH1516-RPMI-TCH1516_HM_ALE_referencePlusProkka_Jan2019gbk-37-SNFR_WT SNFR 10.1128/mSystems.00828-19 2019-06-19
2092 Sodium-Methacrylate_tolerance Horinouchi_T_2017 10.1038/s41598-017-14335-7 2023-03-25
2053 Solvent_Tolerance_Pputida Hadiastri_2021 https://doi.org/10.1128/AEM.00041-21 2023-01-26
436 SSW AC SSW 10.1128/AEM.00410-17 2018-01-08
138 SSW GLU AC SSW 10.1128/AEM.00410-17 2016-11-17
139 SSW GLU GLY SSW 10.1128/AEM.00410-17 2016-11-17
245 SSW GLU XYL SSW 10.1128/AEM.00410-17 2017-04-14
438 SSW GLY SSW 10.1128/AEM.00410-17 2018-01-08
437 SSW XYL SSW 10.1128/AEM.00410-17 2018-01-08
2022 Succinate Kento_Tokuyama_2018 https://doi.org/10.1002/bit.26568 2023-01-09
388 SYN SYN 2017-11-18
1716 SYN SYN 2022-08-02
1012 S_aureus_alone Ford_etal_2016_NatComm 10.1038/ncomms13430 2020-04-09
1013 S_aureus_with_E_faecalis Ford_etal_2016_NatComm 10.1038/ncomms13430 2020-04-09
481 TEE TEE 10.1073/pnas.1616132114 2018-03-01
1711 TEE TEE 2022-08-02
483 TEE Ara TEE 10.1073/pnas.1616132114 2018-03-01
1712 TEE_Ara TEE 2022-08-02
2061 Thermotolerance_and_Autolyze Robin_Dorau_2021 10.1128/AEM.01035-21 2023-02-09
485 TM GluGLy Thermotoga 10.1371/journal.pgen.1003485 2018-03-04
1710 TM_GluGly Thermotoga 2022-08-02
208 TOL 1,2-propanediol E. coli chemical tolerance 10.1016/j.ymben.2023.01.012 2017-01-31
195 TOL 2,3-butanediol E. coli chemical tolerance 10.1016/j.ymben.2023.01.012 2017-01-22
194 TOL adipic acid E. coli chemical tolerance 10.1016/j.ymben.2023.01.012 2017-01-22
196 TOL coumaric acid E. coli chemical tolerance 10.1016/j.ymben.2023.01.012 2017-01-22
197 TOL glutaric acid E. coli chemical tolerance 10.1016/j.ymben.2023.01.012 2017-01-22
198 TOL hexamethylenediamine E. coli chemical tolerance 10.1016/j.ymben.2023.01.012 2017-01-22
199 TOL hexanoic acid E. coli chemical tolerance 10.1016/j.ymben.2023.01.012 2017-01-22
200 TOL isobutyric acid E. coli chemical tolerance 10.1016/j.ymben.2023.01.012 2017-01-22
193 TOL n-butanol E. coli chemical tolerance 10.1016/j.ymben.2023.01.012 2017-01-22
201 TOL octanoic acid E. coli chemical tolerance 10.1016/j.ymben.2023.01.012 2017-01-22
207 TOL putrescine E. coli chemical tolerance 10.1016/j.ymben.2023.01.012 2017-01-31
1850 TOL_NaCl E. coli chemical tolerance 10.1016/j.ymben.2023.01.012 2022-09-19
1001 tpi CCK 2020-03-17
1125 tpi CCK2 2020-09-26
1786 tpi CCK 2022-09-02
1193 tpiHSA SvNS 2020-12-21
1198 tpiKO SvNS 2020-12-21
1197 tpiPAE SvNS 2020-12-21
1195 tpiVCH SvNS 2020-12-21
1144 untreated Ecoli_gallium_resistance 10.1093/emph/eoz025 2020-11-16
1145 untreated_pCA24N-fucO Ecoli_ethylene_glycol_adaption 2020-11-24
2090 Urine_ceftazdime_avibactam Pablo_Laborda_2022 10.1128/spectrum.00247-22 2023-03-20
2086 Urine_ceftazidime Pablo_Laborda_2022 10.1128/spectrum.00247-22 2023-03-20
2089 Urine_tobramycin Pablo_Laborda_2022 10.1128/spectrum.00247-22 2023-03-20
1014 W3110_Acid_Tolerization W3110 Acid Tolerization 10.1128/AEM.03494-14 2020-04-09
940 W3110_Benzoate_Tolerization_in_LBK W3110 Benzoate Tolerization 10.1128/AEM.02736-16 2020-02-18
2131 wild_typeA Christopher_2022 10.1016/j.ymben.2022.10.016 2023-05-01
2128 wild_typeB Christopher_2022 10.1016/j.ymben.2022.10.016 2023-05-01
2133 wild_typeC Christopher_2022 10.1016/j.ymben.2022.10.016 2023-05-01
1507 Wirth_MMV011895 MMV 10.1126/science.aan4472 2021-04-18
1509 Wirth_MMV668399_1 MMV 10.1126/science.aan4472 2021-04-18
1141 wt gRALE_MG1655 10.3389/fmicb.2018.00427 2020-11-11
967 WT_P_aeruginosa_spent_medium Pyocyanin Resistance TALE 10.1371/journal.pgen.1005715 2020-03-06
1713 Xylose_ALE 2017_PNAS_Ecoli_CCR_ALE 10.1073/pnas.1700345114 2022-08-02