Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
0 1 1
4 2 3
5 2 3
6 2 3
7 2 3
8 2 3
9 2 3
7 13 19

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 33 120
Multiple Base Substitutions 0 0
Deletions 3 3
Insertions 0 0
Mobile Element Insertions 0 0
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 36 123

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I0 R1 133 0 93.4 3255464 98.3% 3200121 135.8
A4 F35 I1 R1 3 0 29.6 1259774 97.3% 1225760 135.5
A4 F67 I0 R1 279 0 64.3 2479458 95.9% 2377800 135.2
A4 F67 I1 R1 7 0 92.6 3278966 98.4% 3226502 134.2
A5 F35 I1 R1 2 0 22.6 815794 96.7% 788872 135.3
A5 F65 I0 R1 39 0 317.7 11131448 98.2% 10931081 135.3
A5 F65 I1 R1 6 0 114.0 4014784 98.4% 3950547 134.5
A6 F31 I1 R1 2 0 18.6 702272 97.0% 681203 135.2
A6 F61 I0 R1 274 0 47.1 1889746 95.1% 1797148 135.5
A6 F61 I1 R1 6 0 99.1 3449044 98.9% 3411104 135.5
A7 F34 I1 R1 7 0 72.1 2826286 86.1% 2433432 138.0
A7 F63 I0 R1 89 0 546.6 19089912 98.5% 18803563 135.7
A7 F63 I1 R1 6 0 130.4 4552742 98.9% 4502661 135.0
A8 F36 I1 R1 1 0 12.0 452072 96.3% 435345 135.8
A8 F66 I0 R1 32 0 284.2 9987718 98.1% 9797951 134.8
A8 F66 I1 R1 7 0 67.5 2335286 98.9% 2309597 135.8
A9 F34 I1 R1 5 0 77.8 3017204 88.8% 2679277 135.4
A9 F65 I0 R1 70 0 466.8 16344998 98.3% 16067133 135.8
A9 F65 I1 R1 6 0 137.1 4794628 98.8% 4737092 135.1

Mutation Needle Plot

Mutation Targets

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