Notes

Publication:

10.15252/msb.20188462

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
1 3 4
2 3 4
2 6 8

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 6 24
Multiple Base Substitutions 0 0
Deletions 3 14
Insertions 2 4
Mobile Element Insertions 2 5
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 13 47

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F6 I1 R1 16 0 83.5 1643874 91.3% 1500856 264.2
A1 F45 I1 R1 16 0 80.0 1618316 86.7% 1403079 263.5
A1 F73 I0 R1 68 0 57.5 1132141 89.0% 1007605 292.0
A1 F73 I1 R1 19 0 72.1 1363968 88.4% 1205747 274.5
A2 F10 I1 R1 11 0 80.1 1560396 86.4% 1348182 266.0
A2 F37 I1 R1 13 0 98.9 1854618 90.7% 1682138 262.1
A2 F90 I0 R1 65 0 121.2 2584791 87.3% 2256522 293.1
A2 F90 I1 R1 12 0 122.0 2514920 90.6% 2278517 266.0

Mutation Needle Plot

Mutation Targets

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