breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	annotation	gene	description
MC JC	257,908	Δ776 bp		[crl]	[crl]
RA	1,529,175	T→C	pseudogene (1274/2037 nt)	rhsE →	pseudogene, Rhs family
RA	1,529,180	T→C	pseudogene (1279/2037 nt)	rhsE →	pseudogene, Rhs family
RA	1,529,185	C→T	pseudogene (1284/2037 nt)	rhsE →	pseudogene, Rhs family
RA	1,529,203	C→A	pseudogene (1302/2037 nt)	rhsE →	pseudogene, Rhs family
RA	1,529,218	C→T	pseudogene (1317/2037 nt)	rhsE →	pseudogene, Rhs family
JC JC	1,531,253	IS5 (–) +4 bp	pseudogene (668‑671/738 nt)	yncI →	pseudogene
RA	2,173,363	Δ2 bp	intergenic (‑1/+1)	gatC ← / ← gatC	pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC/pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC
RA	3,560,455	+G	intergenic (‑2/+1)	glpR ← / ← glpR	pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon
RA	4,070,814	G→A	R315C (CGT→TGT)	yihS ←	sulphoquinovose isomerase
RA	4,070,817	C→A	V314L (GTA→TTA)	yihS ←	sulphoquinovose isomerase
RA	4,075,135	T→G	I156S (ATC→AGC)	yihW →	putative transcriptional regulator for sulphoquinovose utilization
RA	4,296,381	+GC	intergenic (+587/+55)	gltP → / ← yjcO	glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein

Unassigned missing coverage evidence
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	583074	584689	1616	38 [29]	[30] 38	[tfaX]–[ompT]	[tfaX],appY,[ompT]
*	*	÷	NC_000913	1465050	1465375	326	36 [35]	[34] 36	[paaY]–ynbG	[paaY],ynbG
*	*	÷	NC_000913	1529990	1530452	463	36 [35]	[33] 37	[ydcD]	[ydcD]
*	*	÷	NC_000913	1636982	1637841	860	36 [35]	[35] 41	[ynfO]–gnsB	[ynfO],ydfO,gnsB
*	*	÷	NC_000913	1978413	1979687	1275	37 [34]	[35] 36	insB1–insA	insB1,insA
*	*	÷	NC_000913	2469058	2470653	1596	37 [34]	[35] 36	[gtrB]–gtrS	[gtrB],gtrS
*	*	÷	NC_000913	3268107	3269664	1558	38 [35]	[34] 38	[yhaB]–yhaC	[yhaB],yhaC
*	*	÷	NC_000913	3796862	3800360	3499	37 [31]	[34] 36	[waaC]–[waaY]	[waaC],waaL,waaU,waaZ,[waaY]
*	*	÷	NC_000913	3804155	3805243	1089	38 [35]	[35] 37	waaS–[waaP]	waaS,[waaP]
*	*	÷	NC_000913	4556286	4556752	467	36 [35]	[30] 36	[yjiC]	[yjiC]
*	*	÷	NC_000913	4571657	4572378	722	36 [30]	[34] 40	yjiS	yjiS