mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 24.4% | 81.9 / 20.7 | 46 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 65 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 22 (0.240) | 19/514 | 4.0 | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 1978502 | 1 (0.010) | 22 (0.240) | 17/506 | 4.4 | 97.8% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913 | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
| * | ? | NC_000913 | = 1207805 | 85 (0.910) | 12 (0.140) | 12/490 | 5.6 | 12.6% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 87 (0.990) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1207790 = | 91 (0.970) | 7 (0.080) | 7/490 | 7.5 | 7.4% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 89 (1.020) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 2498108 | 75 (0.800) | 8 (0.090) | 7/500 | 7.6 | 12.4% | coding (188/1239 nt) | alaC | glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase |
| ? | NC_000913 | = 2498315 | 41 (0.460) | intergenic (‑20/‑356) | alaC/ypdA | glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase/sensor kinase regulating yhjX; pyruvate‑responsive YpdAB two‑component system | |||||
| * | ? | NC_000913 | 1230872 = | 87 (0.930) | 5 (0.060) | 5/502 | 8.6 | 6.2% | coding (106/420 nt) | umuD | translesion error‑prone DNA polymerase V subunit; RecA‑activated auto‑protease |
| ? | NC_000913 | 1231186 = | 68 (0.760) | coding (420/420 nt) coding (1/1269 nt) |
umuD umuC |
translesion error‑prone DNA polymerase V subunit; RecA‑activated auto‑protease translesion error‑prone DNA polymerase V subunit; DNA polymerase activity |
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| * | ? | NC_000913 | 3814351 = | 80 (0.860) | 4 (0.050) | 4/496 | 9.1 | 4.1% | coding (420/456 nt) | dut | deoxyuridinetriphosphatase |
| ? | NC_000913 | 3815455 = | 111 (1.250) | coding (314/642 nt) | pyrE | orotate phosphoribosyltransferase | |||||
| * | ? | NC_000913 | = 1462100 | 102 (1.090) | 4 (0.040) | 4/498 | 9.1 | 3.9% | intergenic (+2/‑25) | paaJ/paaK | 3‑oxoadipyl‑CoA/3‑oxo‑5,6‑dehydrosuberyl‑CoA thiolase/phenylacetyl‑CoA ligase |
| ? | NC_000913 | = 1462210 | 100 (1.120) | coding (86/1314 nt) | paaK | phenylacetyl‑CoA ligase | |||||
| * | ? | NC_000913 | 762116 = | 82 (0.880) | 5 (0.060) | 4/494 | 9.1 | 5.3% | coding (595/1218 nt) | sucB | dihydrolipoyltranssuccinase |
| ? | NC_000913 | 762340 = | 100 (1.130) | coding (819/1218 nt) | sucB | dihydrolipoyltranssuccinase | |||||
| * | ? | NC_000913 | = 4298681 | 113 (1.210) | 7 (0.080) | 4/504 | 9.2 | 6.5% | coding (686/2148 nt) | fdhF | formate dehydrogenase‑H, selenopolypeptide subunit |
| ? | NC_000913 | = 4298934 | 93 (1.030) | coding (433/2148 nt) | fdhF | formate dehydrogenase‑H, selenopolypeptide subunit | |||||