Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
1 1 1
2 1 1
3 1 1
4 1 1
5 1 1
6 1 1
7 1 1
8 1 1
9 1 1
10 1 1
11 1 1
12 1 1
13 1 1
14 1 1
15 1 1
16 1 1
17 1 1
18 1 1
19 1 1
20 1 1
21 1 1
22 1 1
23 1 1
24 1 1
25 1 1
26 1 1
27 1 1
28 1 1
29 1 1
30 1 1
31 1 1
32 1 1
33 1 1
34 1 1
35 1 1
36 1 1
37 1 1
38 1 1
39 1 1
40 1 1
41 1 1
42 1 1
43 1 1
44 1 1
45 1 1
46 1 1
46 46 46

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 379 679
Multiple Base Substitutions 0 0
Deletions 19 155
Insertions 5 140
Mobile Element Insertions 7 52
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 410 1026

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F30 I1 R1 27 0 113.4 3878132 98.9% 3835472 139.0
A2 F30 I1 R1 25 0 92.6 3134550 98.9% 3100069 139.1
A3 F30 I1 R1 17 0 160.2 5443210 98.9% 5383334 138.6
A4 F30 I1 R1 25 0 75.3 2588958 98.8% 2557890 138.6
A5 F30 I1 R1 19 0 97.7 3348414 99.0% 3314929 138.6
A6 F30 I1 R1 25 0 134.5 4568722 99.0% 4523034 138.7
A7 F30 I1 R1 25 0 124.6 4240024 99.3% 4210343 138.7
A8 F30 I1 R1 25 0 145.3 4972014 99.0% 4922293 138.7
A9 F30 I1 R1 28 0 51.6 1769624 98.7% 1746618 138.3
A10 F30 I1 R1 21 0 82.8 2811760 99.1% 2786454 138.6
A11 F30 I1 R1 24 0 98.9 3381600 98.9% 3344402 138.6
A12 F30 I1 R1 17 0 74.5 2526702 99.1% 2503961 138.7
A13 F30 I1 R1 21 0 110.5 3760314 99.0% 3722710 138.5
A14 F30 I1 R1 24 0 92.9 3145580 99.1% 3117269 138.7
A15 F30 I1 R1 23 0 82.0 2817018 98.8% 2783213 138.6
A16 F30 I1 R1 25 0 122.0 4155610 99.2% 4122365 138.6
A17 F30 I1 R1 23 0 30.3 1021886 99.1% 1012689 139.4
A18 F30 I1 R1 22 0 28.4 958084 99.2% 950419 139.4
A19 F30 I1 R1 22 0 88.0 2982758 99.3% 2961878 139.5
A20 F30 I1 R1 23 0 45.4 1528134 99.3% 1517437 139.5
A21 F30 I1 R1 22 0 46.3 1555536 99.4% 1546202 139.4
A22 F30 I1 R1 27 0 45.7 1540800 99.4% 1531555 139.5
A23 F30 I1 R1 20 0 57.7 1952418 99.1% 1934846 138.8
A24 F30 I1 R1 18 0 33.7 1149868 98.9% 1137219 139.0
A25 F30 I1 R1 21 0 83.4 2856556 98.9% 2825133 138.6
A26 F30 I1 R1 27 0 97.0 3296740 99.1% 3267069 138.8
A27 F30 I1 R1 28 0 99.8 3369262 99.0% 3335569 138.6
A28 F30 I1 R1 16 0 96.1 3268922 99.1% 3239501 138.8
A29 F30 I1 R1 20 0 81.3 2797706 99.1% 2772526 138.9
A30 F30 I1 R1 22 0 78.9 2706124 99.2% 2684475 138.9
A31 F30 I1 R1 19 0 139.5 4731114 99.3% 4697996 138.3
A32 F30 I1 R1 29 0 107.7 3658270 99.4% 3636320 138.6
A33 F30 I1 R1 17 0 187.4 6344626 99.4% 6306558 138.3
A34 F30 I1 R1 27 0 158.7 5302006 99.4% 5270193 138.3
A35 F30 I1 R1 27 0 172.7 5791190 99.4% 5756442 138.7
A36 F30 I1 R1 19 0 152.0 5155102 99.4% 5124171 138.7
A37 F30 I1 R1 22 0 188.8 6353638 99.4% 6315516 138.3
A38 F30 I1 R1 20 0 211.3 7163870 99.4% 7120886 138.9
A39 F30 I1 R1 21 0 56.2 1903478 99.1% 1886346 138.8
A40 F30 I1 R1 15 0 68.8 2351386 99.2% 2332574 139.1
A41 F30 I1 R1 22 0 110.6 3775110 99.1% 3741134 139.0
A42 F30 I1 R1 21 0 69.1 2346602 99.2% 2327829 139.1
A43 F30 I1 R1 22 0 145.4 4920522 99.2% 4881157 138.9
A44 F30 I1 R1 17 0 110.4 3774868 99.3% 3748443 138.7
A45 F30 I1 R1 25 0 121.1 4153440 99.4% 4128519 138.9
A46 F30 I1 R1 21 0 163.1 5590070 99.5% 5562119 139.1

Mutation Needle Plot

Mutation Targets

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