mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 70,448 | C→A | A21E (GCG→GAG) | araC → | DNA‑binding transcriptional dual regulator AraC |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 422,007 | C→A | A341E (GCG→GAG) | proY → | putative transporter ProY |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| RA | 1,587,684 | T→G | L17F (TTA→TTC) | ydeQ ← | putative fimbrial adhesin protein YdeQ |
| RA | 1,678,604 | G→T | A60S (GCA→TCA) | ydgH → | DUF1471 domain‑containing protein YdgH |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,640,641 | C→A | intergenic (‑66/+45) | hisS ← / ← ispG | histidine‑‑tRNA ligase/(E)‑4‑hydroxy‑3‑methylbut‑2‑enyl‑diphosphate synthase (flavodoxin) |
| RA | 3,224,696 | C→A | A688A (GCC→GCA) | ebgA → | evolved beta‑D‑galactosidase subunit alpha |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 3,868,026 | +C | coding (299/333 nt) | yidQ → | DUF1375 domain‑containing putative lipoprotein YidQ |
| RA | 3,885,132 | C→A | I19I (ATC→ATA) | yidC → | membrane protein insertase YidC |
| RA | 4,201,797 | G→T | intergenic (‑109/‑129) | zraP ← / → zraS | zinc responsive, periplasmic protein with chaperone activity/sensory histidine kinase ZraS |
| RA | 4,248,334 | G→T | G122C (GGC→TGC) | lamB → | maltose outer membrane channel/phage lambda receptor protein |
| RA | 4,261,710 | C→A | S14R (AGC→AGA) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,505,167 | C→A | G370G (GGC→GGA) | yjhB → | putative sialic acid transporter |
| RA | 4,548,130 | C→A | P130Q (CCA→CAA) | fimF → | type 1 fimbriae minor subunit FimF |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 433032 | 433127 | 96 | 5 [4] | [4] 5 | nrdR | NrdR transcriptional repressor |
| * | * | ÷ | NC_000913 | 3103007 | 3104050 | 1044 | 5 [4] | [3] 5 | [mutY] | [mutY] |
| * | * | ÷ | NC_000913 | 3423785–3424231 | 3424525–3424242 | 12–741 | 5 [4] | [4] 6 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 374963 | NA (NA) | 5 (0.260) | 5/190 | 1.7 | NA | noncoding (33/34 nt) | other | REP31a |
| ? | NC_000913 | = 377487 | NA (NA) | intergenic (+176/+48) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 23 (0.840) | 20/268 | 0.4 | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 3363001 = | 37 (1.310) | 46 (1.640) | 35/274 | 0.0 | 70.4% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 2 (0.070) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 27 (0.950) | 21/276 | 0.3 | 90.0% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 3 (0.110) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||