breseq  version 0.35.4  revision f352f80f4bc9 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,068,173	0	T	G	52.6%	9.9 / 23.7	19	G31G (GGT→GGG)	ymdF	conserved protein YmdF
*	NC_000913	4,604,344	0	C	T	40.0%	28.5 / 16.1	30	S62F (TCT→TTT)	bglJ	DNA‑binding transcriptional regulator BglJ
*	NC_000913	2,326,450	0	T	G	38.5%	25.5 / 18.4	26	G114G (GGT→GGG)	atoB	acetyl‑CoA acetyltransferase
*	NC_000913	4,296,060	0	C	T	23.3%	53.1 / 13.1	30	intergenic (+266/+376)	gltP/yjcO	glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO

Marginal new junction evidence (sorted from low to high skew)
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1207790 =	31 (1.100)	4 (0.160)	4/244	2.6	13.9%	coding (290/630 nt)	ycfK	e14 prophage; protein StfP
	?	NC_000913	1209619 =	22 (0.880)					pseudogene (37/537 nt)	stfE	e14 prophage; putative side tail fiber protein fragment
*	?	NC_000913	= 4542690	47 (1.660)	4 (0.150)	4/258	2.7	9.6%	intergenic (+57/‑425)	fimE/fimA	regulator for fimA/type 1 fimbriae major subunit
	?	NC_000913	= 4542986	31 (1.170)					intergenic (+353/‑129)	fimE/fimA	regulator for fimA/type 1 fimbriae major subunit
*	?	NC_000913	4542682 =	43 (1.520)	3 (0.110)	3/258	3.1	7.8%	intergenic (+49/‑433)	fimE/fimA	regulator for fimA/type 1 fimbriae major subunit
	?	NC_000913	4542996 =	31 (1.170)					intergenic (+363/‑119)	fimE/fimA	regulator for fimA/type 1 fimbriae major subunit