mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 9,505 | G→T | C67F (TGC→TTC) | mog → | molybdopterin adenylyltransferase |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 595,903 | C→A | L102I (CTC→ATC) | cusC → | copper/silver export system outer membrane channel |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| RA | 1,317,213 | A→T | Y4N (TAC→AAC) | trpA ← | tryptophan synthase subunit alpha |
| RA | 1,678,604 | G→T | A60S (GCA→TCA) | ydgH → | DUF1471 domain‑containing protein YdgH |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,177,894 | G→T | A224E (GCA→GAA) | fbaB ← | fructose‑bisphosphate aldolase class I |
| RA | 2,703,294 | C→A | Q31H (CAG→CAT) | era ← | 30S ribosomal subunit maturation GTPase Era |
| RA | 2,863,542 | C→A | intergenic (+41/‑51) | ygbK → / → ygbL | putative 3‑oxo‑tetronate kinase YgbK/putative 3‑oxo‑tetronate 4‑phosphate decarboxylase YgbL |
| RA | 2,947,714 | G→T | intergenic (+31/+43) | metV → / ← amiC | tRNA‑Met/N‑acetylmuramoyl‑L‑alanine amidase C |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,692,826 | G→T | P804Q (CCG→CAG) | bcsA ← | cellulose synthase catalytic subunit |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 3,874,571 | G→T | A197E (GCG→GAG) | dgoR ← | putative DNA‑binding transcriptional regulator DgoR |
| RA | 3,880,056 | G→T | R22S (CGC→AGC) | gyrB ← | DNA gyrase subunit B |
| RA | 4,030,093 | G→T | F293L (TTC→TTA) | fadB ← | dodecenoyl‑CoA delta‑isomerase, enoyl‑CoA hydratase, 3‑hydroxybutyryl‑CoA epimerase, 3‑hydroxyacyl‑CoA dehydrogenase |
| RA | 4,131,320 | G→T | G496C (GGT→TGT) | metL → | fused aspartate kinase/homoserine dehydrogenase 2 |
| RA | 4,238,824 | G→T | T397T (ACG→ACT) | yjbH → | YjbH family protein |
| RA | 4,261,710 | C→A | S14R (AGC→AGA) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,505,167 | C→A | G370G (GGC→GGA) | yjhB → | putative sialic acid transporter |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3102941 | 3104069 | 1129 | 33 [32] | [31] 33 | mutY | mutY |
| * | * | ÷ | NC_000913 | 3423770–3424234 | 3424525–3424239 | 6–756 | 34 [31] | [21] 33 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 142 (1.190) | 82/268 | 0.1 | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 3363001 = | 198 (1.620) | 183 (1.510) | 79/274 | 0.1 | 64.6% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 4 (0.030) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 138 (1.130) | 67/276 | 0.3 | 97.2% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 4 (0.030) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||