Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
0 1 1
1 3 4
2 3 4
3 3 4
4 3 4
5 13 17

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 44 107
Multiple Base Substitutions 0 0
Deletions 7 68
Insertions 10 44
Mobile Element Insertions 7 34
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 68 253

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 8 0 93.4 3336394 91.1% 3039454 143.5
A1 F3 I1 R1 9 0 28.0 1143766 97.4% 1114028 135.9
A1 F47 I1 R1 13 0 28.1 1106256 97.8% 1081918 136.0
A1 F87 I0 R1 237 0 95.2 3668036 97.3% 3568999 140.3
A1 F87 I1 R1 13 0 84.3 3290658 97.6% 3211682 138.4
A2 F2 I1 R1 11 0 29.1 961540 98.8% 950001 141.3
A2 F43 I1 R1 18 0 34.4 1194698 96.8% 1156467 139.5
A2 F79 I0 R1 300 0 101.7 3679464 93.8% 3451337 137.8
A2 F79 I1 R1 16 0 95.2 3174666 97.7% 3101648 140.1
A3 F2 I1 R1 12 0 39.5 1304580 98.1% 1279792 140.7
A3 F36 I1 R1 16 0 37.6 1496218 97.1% 1452827 127.7
A3 F68 I0 R1 204 0 106.4 3934844 97.5% 3836472 140.8
A3 F68 I1 R1 13 0 78.6 3085910 98.1% 3027277 142.9
A4 F4 I1 R1 13 0 37.4 1246952 98.2% 1224506 142.8
A4 F40 I1 R1 15 0 30.2 1007882 98.6% 993771 143.0
A4 F81 I0 R1 253 0 75.1 3021180 96.0% 2900332 137.4
A4 F81 I1 R1 14 0 78.8 2834210 97.1% 2752017 142.6

Mutation Needle Plot

Mutation Targets

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