mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 9,907 | A→C | 8.5% | intergenic (+14/+21) | mog → / ← satP | molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter |
| RA | 9,908 | G→T | 8.3% | intergenic (+15/+20) | mog → / ← satP | molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter |
| RA | 18,678 | A→G | 5.2% | intergenic (+23/‑37) | nhaA → / → nhaR | sodium‑proton antiporter/transcriptional activator of nhaA |
| RA | 18,680 | A→T | 5.2% | intergenic (+25/‑35) | nhaA → / → nhaR | sodium‑proton antiporter/transcriptional activator of nhaA |
| RA | 18,681 | A→T | 5.9% | intergenic (+26/‑34) | nhaA → / → nhaR | sodium‑proton antiporter/transcriptional activator of nhaA |
| RA | 18,683 | C→T | 5.3% | intergenic (+28/‑32) | nhaA → / → nhaR | sodium‑proton antiporter/transcriptional activator of nhaA |
| RA | 77,009 | Δ1 bp | 5.1% | coding (291/1656 nt) | sgrR ← | transcriptional DNA‑binding transcriptional activator of sgrS sRNA |
| RA | 151,519 | A→C | 5.2% | I27M (ATT→ATG) | yadK ← | putative fimbrial‑like adhesin protein |
| RA | 151,522 | G→T | 5.1% | A26A (GCC→GCA) | yadK ← | putative fimbrial‑like adhesin protein |
| RA | 164,620 | C→T | 8.0% | intergenic (+86/‑110) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| RA | 164,621 | A→G | 8.0% | intergenic (+87/‑109) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| RA | 165,279 | G→A | 5.9% | V184I (GTC→ATC) | mrcB → | fused glycosyl transferase and transpeptidase |
| RA | 168,660 | C→T | 100% | Q393* (CAG→TAG) | fhuA → | ferrichrome outer membrane transporter |
| RA | 181,275 | A→T | 5.4% | H131L (CAC→CTC) | degP → | serine endoprotease (protease Do), membrane‑associated |
| RA | 183,662 | A→T | 6.1% | intergenic (+42/+47) | cdaR → / ← yaeH | carbohydrate diacid regulon transcriptional regulator; autoregulator/UPF0325 family protein |
| RA | 183,663 | G→A | 6.0% | intergenic (+43/+46) | cdaR → / ← yaeH | carbohydrate diacid regulon transcriptional regulator; autoregulator/UPF0325 family protein |
| RA | 183,667 | G→T | 5.8% | intergenic (+47/+42) | cdaR → / ← yaeH | carbohydrate diacid regulon transcriptional regulator; autoregulator/UPF0325 family protein |
| RA | 183,668 | A→T | 6.3% | intergenic (+48/+41) | cdaR → / ← yaeH | carbohydrate diacid regulon transcriptional regulator; autoregulator/UPF0325 family protein |
| RA | 183,669 | A→C | 5.9% | intergenic (+49/+40) | cdaR → / ← yaeH | carbohydrate diacid regulon transcriptional regulator; autoregulator/UPF0325 family protein |
| RA | 183,673 | T→C | 6.0% | intergenic (+53/+36) | cdaR → / ← yaeH | carbohydrate diacid regulon transcriptional regulator; autoregulator/UPF0325 family protein |
| RA | 183,674 | A→T | 6.2% | intergenic (+54/+35) | cdaR → / ← yaeH | carbohydrate diacid regulon transcriptional regulator; autoregulator/UPF0325 family protein |
| RA | 194,737 | A→T | 6.3% | intergenic (+20/‑166) | dxr → / → ispU | 1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase/undecaprenyl pyrophosphate synthase |
| RA | 205,220 | C→T | 5.9% | A32V (GCG→GTG) | dnaE → | DNA polymerase III alpha subunit |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 314,255 | T→C | 6.2% | intergenic (‑450/‑102) | ykgP ← / → eaeH | pseudogene, oxidoreductase family/pseudogene, attaching and effacing protein homology;factor; Not classified |
| RA | 314,258 | G→A | 6.6% | intergenic (‑453/‑99) | ykgP ← / → eaeH | pseudogene, oxidoreductase family/pseudogene, attaching and effacing protein homology;factor; Not classified |
| RA | 339,772 | A→C | 5.1% | intergenic (+29/‑393) | yahG → / → yahI | DUF1116 family protein/carbamate kinase‑like protein |
| RA | 349,717 | T→C | 10.7% | intergenic (+145/‑295) | prpB → / → prpC | 2‑methylisocitrate lyase/2‑methylcitrate synthase |
| RA | 377,499 | A→G | 5.1% | intergenic (+188/+36) | yaiL → / ← frmB | DUF2058 family protein/S‑formylglutathione hydrolase |
| RA | 377,500 | A→C | 5.1% | intergenic (+189/+35) | yaiL → / ← frmB | DUF2058 family protein/S‑formylglutathione hydrolase |
| RA | 431,107 | A→T | 5.3% | intergenic (+155/+22) | yajD → / ← tsx | HNH nuclease family protein/nucleoside channel, receptor of phage T6 and colicin K |
| RA | 475,971 | C→G | 9.4% | intergenic (+20/+11) | ybaY → / ← ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL |
| RA | 475,972 | C→G | 9.3% | intergenic (+21/+10) | ybaY → / ← ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL |
| RA | 495,026 | A→T | 5.6% | intergenic (+16/‑94) | recR → / → htpG | gap repair protein/protein refolding molecular co‑chaperone Hsp90, Hsp70‑dependent; heat‑shock protein; ATPase |
| RA | 495,027 | T→G | 6.3% | intergenic (+17/‑93) | recR → / → htpG | gap repair protein/protein refolding molecular co‑chaperone Hsp90, Hsp70‑dependent; heat‑shock protein; ATPase |
| RA | 495,028 | C→A | 5.2% | intergenic (+18/‑92) | recR → / → htpG | gap repair protein/protein refolding molecular co‑chaperone Hsp90, Hsp70‑dependent; heat‑shock protein; ATPase |
| RA | 495,029 | A→T | 5.2% | intergenic (+19/‑91) | recR → / → htpG | gap repair protein/protein refolding molecular co‑chaperone Hsp90, Hsp70‑dependent; heat‑shock protein; ATPase |
| RA | 495,040 | C→T | 5.6% | intergenic (+30/‑80) | recR → / → htpG | gap repair protein/protein refolding molecular co‑chaperone Hsp90, Hsp70‑dependent; heat‑shock protein; ATPase |
| RA | 543,091 | G→C | 7.9% | intergenic (+58/+170) | glxK → / ← allE | glycerate kinase II/S‑ureidoglycine aminohydrolase |
| RA | 543,094 | G→C | 7.1% | intergenic (+61/+167) | glxK → / ← allE | glycerate kinase II/S‑ureidoglycine aminohydrolase |
| RA | 553,885 | G→A | 6.5% | T19I (ACC→ATC) | lpxH ← | UDP‑2,3‑diacylglucosamine pyrophosphohydrolase |
| RA | 553,887 | G→C | 5.5% | I18M (ATC→ATG) ‡ | lpxH ← | UDP‑2,3‑diacylglucosamine pyrophosphohydrolase |
| RA | 553,889 | T→C | 5.2% | I18V (ATC→GTC) ‡ | lpxH ← | UDP‑2,3‑diacylglucosamine pyrophosphohydrolase |
| RA | 632,070 | T→G | 5.2% | intergenic (+71/‑112) | cstA → / → ybdD | carbon starvation protein involved in peptide utilization; APC peptide transporter family protein/DUF466 family protein |
| RA | 641,355 | G→A | 6.0% | intergenic (+37/+84) | ahpF → / ← uspG | alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)‑binding/universal stress protein UP12 |
| RA | 641,360 | C→T | 5.6% | intergenic (+42/+79) | ahpF → / ← uspG | alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)‑binding/universal stress protein UP12 |
| RA | 641,361 | A→G | 5.6% | intergenic (+43/+78) | ahpF → / ← uspG | alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)‑binding/universal stress protein UP12 |
| RA | 641,363 | A→C | 5.6% | intergenic (+45/+76) | ahpF → / ← uspG | alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)‑binding/universal stress protein UP12 |
| RA | 641,366 | T→C | 5.3% | intergenic (+48/+73) | ahpF → / ← uspG | alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)‑binding/universal stress protein UP12 |
| RA | 654,560 | A→C | 7.0% | intergenic (+18/+23) | citB → / ← dcuC | response regulator in two‑component regulatory system with CitA/anaerobic C4‑dicarboxylate transport |
| RA | 654,563 | C→G | 7.0% | intergenic (+21/+20) | citB → / ← dcuC | response regulator in two‑component regulatory system with CitA/anaerobic C4‑dicarboxylate transport |
| RA | 654,566 | G→T | 7.0% | intergenic (+24/+17) | citB → / ← dcuC | response regulator in two‑component regulatory system with CitA/anaerobic C4‑dicarboxylate transport |
| RA | 657,531 | T→G | 5.6% | intergenic (+30/+24) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 657,533 | A→T | 6.4% | intergenic (+32/+22) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 657,535 | C→A | 6.5% | intergenic (+34/+20) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 659,207 | A→G | 6.3% | intergenic (+57/+44) | tatE → / ← lipA | TatABCE protein translocation system subunit/lipoate synthase |
| RA | 670,215 | A→G | 5.6% | Y120H (TAC→CAC) | nadD ← | nicotinic acid mononucleotide adenylyltransferase, NAD(P)‑dependent |
| RA | 691,858 | T→G | 6.4% | intergenic (‑74/+16) | ybeX ← / ← ybeY | putative ion transport/ssRNA‑specific endoribonuclease; 16S rRNA 3' end maturation and quality control co‑endoribonuclease working with RNase R; rRNA transcription antitermination factor |
| RA | 691,861 | A→T | 6.6% | intergenic (‑77/+13) | ybeX ← / ← ybeY | putative ion transport/ssRNA‑specific endoribonuclease; 16S rRNA 3' end maturation and quality control co‑endoribonuclease working with RNase R; rRNA transcription antitermination factor |
| RA | 691,862 | A→T | 6.8% | intergenic (‑78/+12) | ybeX ← / ← ybeY | putative ion transport/ssRNA‑specific endoribonuclease; 16S rRNA 3' end maturation and quality control co‑endoribonuclease working with RNase R; rRNA transcription antitermination factor |
| RA | 691,865 | C→A | 6.6% | intergenic (‑81/+9) | ybeX ← / ← ybeY | putative ion transport/ssRNA‑specific endoribonuclease; 16S rRNA 3' end maturation and quality control co‑endoribonuclease working with RNase R; rRNA transcription antitermination factor |
| RA | 699,556 | C→T | 6.8% | intergenic (‑379/+18) | asnB ← / ← umpH | asparagine synthetase B/UMP phosphatase |
| JC JC | 729,659 | Δ3 bp :: IS186 (+) +9 bp :: Δ1 bp | 61.8% | coding (77‑85/4194 nt) | rhsC → | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| RA | 733,108 | C→T | 5.6% | L1176L (CTG→TTG) | rhsC → | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| RA | 832,252 | T→A | 8.9% | intergenic (+16/+216) | rhlE → / ← ybiA | ATP‑dependent RNA helicase/DUF1768 family protein |
| RA | 832,253 | A→T | 8.7% | intergenic (+17/+215) | rhlE → / ← ybiA | ATP‑dependent RNA helicase/DUF1768 family protein |
| RA | 832,254 | T→A | 9.1% | intergenic (+18/+214) | rhlE → / ← ybiA | ATP‑dependent RNA helicase/DUF1768 family protein |
| RA | 854,794 | G→T | 5.8% | intergenic (+29/+30) | ybiR → / ← ldtB | putative transporter/L,D‑transpeptidase linking Lpp to murein |
| RA | 857,576 | T→C | 6.3% | intergenic (+21/+220) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 857,578 | C→G | 6.3% | intergenic (+23/+218) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 857,580 | G→A | 6.4% | intergenic (+25/+216) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 909,353 | G→A | 69.9% | A566V (GCG→GTG) | poxB ← | pyruvate dehydrogenase, thiamine triphosphate‑binding, FAD‑binding |
| RA | 909,400 | C→A | 26.6% | M550I (ATG→ATT) | poxB ← | pyruvate dehydrogenase, thiamine triphosphate‑binding, FAD‑binding |
| JC JC | 911,086 | IS2 (–) +5 bp | 100% | intergenic (‑37/+92) | poxB ← / ← hcr | pyruvate dehydrogenase, thiamine triphosphate‑binding, FAD‑binding/HCP oxidoreductase, NADH‑dependent |
| RA | 1,019,735 | G→T | 11.5% | P107T (CCA→ACA) | ompA ← | outer membrane protein A (3a;II*;G;d) |
| RA | 1,088,550 | A→G | 5.2% | S436S (TCT→TCC) | pgaB ← | poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine (PGA) N‑deacetylase outer membrane export lipoprotein |
| RA | 1,159,287 | C→A | 100% | Y473* (TAC→TAA) | ptsG → | fused glucose‑specific PTS enzymes: IIB component/IIC component |
| RA | 1,194,811 | G→T | 5.3% | P47P (CCC→CCA) | rluE ← | 23S rRNA pseudouridine(2457) synthase |
| RA | 1,196,220 | C→T | 57.9% | H366H (CAC→CAT) | icd → | isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase |
| RA | 1,196,232 | C→T | 53.2% | T370T (ACC→ACT) | icd → | isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase |
| RA | 1,196,245 | T→C | 52.6% | L375L (TTA→CTA) ‡ | icd → | isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase |
| RA | 1,196,247 | A→G | 50.0% | L375L (TTA→TTG) ‡ | icd → | isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase |
| RA | 1,196,277 | C→T | 14.8% | N385N (AAC→AAT) | icd → | isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase |
| RA | 1,196,280 | G→C | 14.5% | A386A (GCG→GCC) | icd → | isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase |
| RA | 1,196,283 | A→G | 14.3% | K387K (AAA→AAG) | icd → | isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase |
| RA | 1,234,957 | G→A | 6.3% | S7N (AGC→AAC) | fadR → | fatty acid metabolism regulon transcriptional regulator |
| RA | 1,234,962 | G→C | 6.5% | A9P (GCG→CCG) | fadR → | fatty acid metabolism regulon transcriptional regulator |
| RA | 1,234,967 | T→C | 6.4% | G10G (GGT→GGC) | fadR → | fatty acid metabolism regulon transcriptional regulator |
| RA | 1,234,970 | C→T | 6.5% | F11F (TTC→TTT) | fadR → | fatty acid metabolism regulon transcriptional regulator |
| RA | 1,287,009 | A→T | 9.9% | intergenic (+483/+57) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| MC JC | 1,299,499 | Δ1,199 bp | 100% | intergenic (+254/‑485) | ychE → / → oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,311,830 | A→G | 5.4% | intergenic (+22/+18) | tonB → / ← yciA | membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase |
| RA | 1,311,831 | C→T | 5.5% | intergenic (+23/+17) | tonB → / ← yciA | membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase |
| RA | 1,351,784 | T→C | 5.0% | intergenic (‑24/+44) | ycjD ← / ← sapF | DUF559 family endonuclease‑related protein/antimicrobial peptide ABC transporter ATPase |
| RA | 1,388,283 | C→T | 7.3% | intergenic (+22/+22) | tyrR → / ← tpx | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase |
| RA | 1,388,284 | A→T | 7.2% | intergenic (+23/+21) | tyrR → / ← tpx | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase |
| RA | 1,388,285 | A→G | 7.6% | intergenic (+24/+20) | tyrR → / ← tpx | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase |
| RA | 1,402,924 | T→C | 5.0% | H111R (CAC→CGC) | abgB ← | p‑aminobenzoyl‑glutamate hydrolase, B subunit |
| RA | 1,446,357:1 | +T | 5.2% | intergenic (+151/+21) | ydbL → / ← feaR | DUF1318 family protein/transcriptional activator for tynA and feaB |
| RA | 1,446,362 | Δ1 bp | 5.4% | intergenic (+156/+16) | ydbL → / ← feaR | DUF1318 family protein/transcriptional activator for tynA and feaB |
| RA | 1,499,361 | A→G | 5.4% | N142D (AAC→GAC) | rimL → | ribosomal‑protein‑L7/L12‑serine acetyltransferase |
| RA | 1,499,365 | A→T | 7.3% | Q143L (CAG→CTG) | rimL → | ribosomal‑protein‑L7/L12‑serine acetyltransferase |
| RA | 1,499,369 | C→T | 7.3% | V144V (GTC→GTT) | rimL → | ribosomal‑protein‑L7/L12‑serine acetyltransferase |
| RA | 1,528,193 | G→C | 5.6% | pseudogene (292/2037 nt) | rhsE → | pseudogene, Rhs family |
| RA | 1,528,194 | A→T | 5.6% | pseudogene (293/2037 nt) | rhsE → | pseudogene, Rhs family |
| RA | 1,528,195 | G→C | 5.7% | pseudogene (294/2037 nt) | rhsE → | pseudogene, Rhs family |
| RA | 1,530,490 | T→C | 6.5% | intergenic (+86/‑96) | ydcD → / → yncI | putative immunity protein for RhsE/pseudogene |
| RA | 1,530,496 | G→T | 6.1% | intergenic (+92/‑90) | ydcD → / → yncI | putative immunity protein for RhsE/pseudogene |
| RA | 1,530,499 | A→C | 5.9% | intergenic (+95/‑87) | ydcD → / → yncI | putative immunity protein for RhsE/pseudogene |
| RA | 1,530,505 | G→A | 5.7% | intergenic (+101/‑81) | ydcD → / → yncI | putative immunity protein for RhsE/pseudogene |
| RA | 1,535,691 | G→A | 6.6% | S56S (AGC→AGT) | yddE ← | PhzC‑PhzF family protein |
| RA | 1,552,027 | A→T | 6.0% | intergenic (+36/+371) | fdnI → / ← yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| RA | 1,552,078 | G→A | 7.8% | intergenic (+87/+320) | fdnI → / ← yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| RA | 1,552,079 | C→A | 9.3% | intergenic (+88/+319) | fdnI → / ← yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| RA | 1,552,085 | G→T | 6.1% | intergenic (+94/+313) | fdnI → / ← yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| RA | 1,552,086 | A→C | 6.3% | intergenic (+95/+312) | fdnI → / ← yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| RA | 1,552,092 | T→G | 5.6% | intergenic (+101/+306) | fdnI → / ← yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| RA | 1,552,093 | T→C | 5.8% | intergenic (+102/+305) | fdnI → / ← yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| RA | 1,570,610 | G→A | 5.4% | intergenic (‑121/+35) | gadC ← / ← gadB | glutamate:gamma‑aminobutyric acid antiporter/glutamate decarboxylase B, PLP‑dependent |
| RA | 1,570,611 | G→A | 5.3% | intergenic (‑122/+34) | gadC ← / ← gadB | glutamate:gamma‑aminobutyric acid antiporter/glutamate decarboxylase B, PLP‑dependent |
| RA | 1,570,612 | T→C | 5.4% | intergenic (‑123/+33) | gadC ← / ← gadB | glutamate:gamma‑aminobutyric acid antiporter/glutamate decarboxylase B, PLP‑dependent |
| RA | 1,570,613 | T→C | 5.4% | intergenic (‑124/+32) | gadC ← / ← gadB | glutamate:gamma‑aminobutyric acid antiporter/glutamate decarboxylase B, PLP‑dependent |
| RA | 1,649,718 | A→G | 89.1% | E37G (GAA→GGA) | dicB → | Qin prophage; cell division inhibition protein |
| RA | 1,667,529 | T→A | 100% | K346* (AAA→TAA) | mlc ← | glucosamine anaerobic growth regulon transcriptional repressor; autorepressor |
| RA | 1,667,774 | C→A | 8.8% | C264F (TGC→TTC) | mlc ← | glucosamine anaerobic growth regulon transcriptional repressor; autorepressor |
| RA | 1,674,955 | A→T | 10.9% | intergenic (+8/+17) | tqsA → / ← pntB | pheromone AI‑2 transporter/pyridine nucleotide transhydrogenase, beta subunit |
| RA | 1,674,958 | A→T | 9.6% | intergenic (+11/+14) | tqsA → / ← pntB | pheromone AI‑2 transporter/pyridine nucleotide transhydrogenase, beta subunit |
| RA | 1,731,134 | G→A | 7.3% | R683H (CGC→CAC) | lhr → | putative ATP‑dependent helicase |
| RA | 1,736,100 | T→A | 5.0% | intergenic (+141/+21) | sodB → / ← ydhP | superoxide dismutase, Fe/putative MFS transporter, inner membrane protein |
| RA | 1,737,434 | A→C | 7.0% | intergenic (‑144/+22) | ydhP ← / ← ynhF | putative MFS transporter, inner membrane protein/stress response membrane |
| RA | 1,737,435 | A→G | 6.8% | intergenic (‑145/+21) | ydhP ← / ← ynhF | putative MFS transporter, inner membrane protein/stress response membrane |
| RA | 1,737,438 | C→T | 7.1% | intergenic (‑148/+18) | ydhP ← / ← ynhF | putative MFS transporter, inner membrane protein/stress response membrane |
| RA | 1,737,439 | G→T | 7.5% | intergenic (‑149/+17) | ydhP ← / ← ynhF | putative MFS transporter, inner membrane protein/stress response membrane |
| RA | 1,746,485 | T→G | 8.5% | noncoding (51/77 nt) | valV → | tRNA‑Val |
| RA | 1,747,149 | G→T | 6.3% | V7L (GTG→TTG) | ydhS → | putative oxidoreductase |
| RA | 1,778,364 | C→T | 5.1% | intergenic (+17/+26) | ydiO → / ← ydiP | putative acyl‑CoA dehydrogenase/putative DNA‑binding transcriptional regulator |
| RA | 1,778,367 | C→G | 5.1% | intergenic (+20/+23) | ydiO → / ← ydiP | putative acyl‑CoA dehydrogenase/putative DNA‑binding transcriptional regulator |
| RA | 1,846,923 | C→G | 5.3% | R13P (CGC→CCC) | topB ← | DNA topoisomerase III |
| RA | 1,865,682 | G→C | 6.6% | intergenic (‑46/+44) | yeaE ← / ← mipA | aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent/scaffolding protein for murein synthesizing machinery |
| RA | 1,890,067 | G→T | 5.8% | P156T (CCG→ACG) | yeaY ← | Slp family lipoprotein, RpoE‑regulated |
| RA | 1,896,377 | G→A | 5.2% | D70N (GAT→AAT) | nudL → | putative CoA pyrophosphohydrolase, weak 3‑phosphohydroxypyruvate phosphatase |
| RA | 1,926,894 | T→G | 6.0% | D649A (GAC→GCC) | ptrB ← | protease II |
| RA | 1,940,404 | T→C | 5.1% | K411R (AAA→AGA) | mepM ← | murein DD‑endopeptidase, space‑maker hydrolase, septation protein |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| JC JC | 1,979,486 | IS5 (+) +4 bp | 100% | intergenic (‑271/‑264) | insA ← / → uspC | IS1 repressor TnpA/universal stress protein |
| RA | 2,009,731 | A→G | 5.6% | intergenic (+19/‑90) | yedF → / → yedK | putative TusA family sulfurtransferase/DUF159 family protein |
| RA | 2,009,732 | C→G | 5.6% | intergenic (+20/‑89) | yedF → / → yedK | putative TusA family sulfurtransferase/DUF159 family protein |
| RA | 2,009,733 | C→T | 5.5% | intergenic (+21/‑88) | yedF → / → yedK | putative TusA family sulfurtransferase/DUF159 family protein |
| RA | 2,028,109 | A→G | 5.1% | intergenic (‑92/+79) | yedQ ← / ← yodC | putative membrane‑anchored diguanylate cyclase/uncharacterized protein |
| RA | 2,042,457 | C→A | 91.2% | G30G (GGC→GGA) | yodB → | cytochrome b561 homolog |
| RA | 2,076,298 | T→A | 11.1% | V507E (GTA→GAA) | yeeR → | CP4‑44 prophage; putative membrane protein |
| RA | 2,090,122 | A→G | 9.7% | intergenic (+76/‑70) | hisL → / → hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| RA | 2,090,124 | C→G | 9.9% | intergenic (+78/‑68) | hisL → / → hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| RA | 2,090,126 | C→T | 10.0% | intergenic (+80/‑66) | hisL → / → hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| RA | 2,142,505 | G→C | 6.2% | R148R (CGC→CGG) | udk ← | uridine/cytidine kinase |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,225,014 | T→A | 5.1% | intergenic (‑144/+30) | pbpG ← / ← yohC | D‑alanyl‑D‑alanine endopeptidase/Yip1 family inner membrane protein |
| RA | 2,263,236 | C→G | 5.8% | W87S (TGG→TCG) | fruB ← | fused fructose‑specific PTS enzymes: IIA component/HPr component |
| RA | 2,270,602 | T→C | 5.2% | intergenic (+57/‑124) | mepS → / → rtn | murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD‑carboxypeptidase/resistance protein for phages lambda and N4, putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| RA | 2,305,085 | A→G | 9.4% | intergenic (+692/+23) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,305,086 | C→G | 9.7% | intergenic (+693/+22) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,305,087 | C→T | 9.7% | intergenic (+694/+21) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,364,995 | T→G | 6.9% | intergenic (+16/+23) | nudI → / ← ais | nucleoside triphosphatase/putative LPS core heptose(II)‑phosphate phosphatase |
| RA | 2,364,998 | C→A | 6.8% | intergenic (+19/+20) | nudI → / ← ais | nucleoside triphosphatase/putative LPS core heptose(II)‑phosphate phosphatase |
| JC JC | 2,375,828 | IS186 (+) +4 bp | 68.6% | coding (132‑135/963 nt) | menC ← | O‑succinylbenzoyl‑CoA synthase |
| JC JC | 2,415,938 | IS2 (–) +5 bp | 100% | coding (1192‑1196/2145 nt) | pta → | phosphate acetyltransferase |
| RA | 2,525,907 | G→A | 8.2% | intergenic (+16/+23) | yfeN → / ← yfeR | putative outer membrane protein/transcriptional regulator of yefH |
| RA | 2,525,908 | C→G | 7.7% | intergenic (+17/+22) | yfeN → / ← yfeR | putative outer membrane protein/transcriptional regulator of yefH |
| RA | 2,539,929 | C→T | 5.4% | V296I (GTA→ATA) | cysA ← | sulfate/thiosulfate transporter subunit |
| RA | 2,581,762 | G→A | 5.1% | A339V (GCC→GTC) | ypfG ← | DUF1176 family protein |
| RA | 2,581,765 | T→C | 6.4% | D338G (GAC→GGC) | ypfG ← | DUF1176 family protein |
| RA | 2,596,873 | Δ1 bp | 6.9% | intergenic (‑136/+32) | ypfJ ← / ← purC | putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase |
| RA | 2,596,878:1 | +G | 7.1% | intergenic (‑141/+27) | ypfJ ← / ← purC | putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase |
| RA | 2,643,721 | A→G | 5.9% | V188A (GTC→GCC) | rlmN ← | dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM‑dependent |
| RA | 2,691,169 | A→T | 9.4% | noncoding (172/184 nt) | glmY ← | sRNA activator of glmS mRNA, glmZ processing antagonist |
| RA | 2,691,171 | T→A | 8.8% | noncoding (170/184 nt) | glmY ← | sRNA activator of glmS mRNA, glmZ processing antagonist |
| RA | 2,691,173 | A→T | 8.9% | noncoding (168/184 nt) | glmY ← | sRNA activator of glmS mRNA, glmZ processing antagonist |
| JC | 2,721,212 | +GCCGGGCT | 100% | coding (1260/2661 nt) | pka → | protein lysine acetyltransferase |
| RA | 2,729,475:1 | +A | 5.5% | intergenic (‑31/+141) | gltW ← / ← rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon |
| RA | 2,729,475:2 | +G | 5.5% | intergenic (‑31/+141) | gltW ← / ← rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon |
| RA | 2,729,475:3 | +C | 5.5% | intergenic (‑31/+141) | gltW ← / ← rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon |
| RA | 2,729,475:4 | +A | 5.5% | intergenic (‑31/+141) | gltW ← / ← rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon |
| RA | 2,729,475:5 | +A | 5.5% | intergenic (‑31/+141) | gltW ← / ← rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon |
| RA | 2,745,163 | C→A | 8.6% | G59G (GGG→GGT) | trmD ← | tRNA m(1)G37 methyltransferase, SAM‑dependent |
| RA | 2,800,515 | C→A | 6.0% | intergenic (+40/‑208) | ygaM → / → nrdH | putative membrane‑anchored DUF883 family ribosome‑binding protein/hydrogen donor for NrdEF electron transport system; glutaredoxin‑like protein |
| RA | 2,800,517 | T→A | 6.0% | intergenic (+42/‑206) | ygaM → / → nrdH | putative membrane‑anchored DUF883 family ribosome‑binding protein/hydrogen donor for NrdEF electron transport system; glutaredoxin‑like protein |
| RA | 2,800,519 | T→G | 5.9% | intergenic (+44/‑204) | ygaM → / → nrdH | putative membrane‑anchored DUF883 family ribosome‑binding protein/hydrogen donor for NrdEF electron transport system; glutaredoxin‑like protein |
| RA | 2,823,523:1 | +A | 5.6% | coding (247/1062 nt) | recA ← | DNA recombination and repair protein; ssDNA‑dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP‑dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor |
| RA | 2,823,526 | C→T | 5.2% | A82T (GCC→ACC) | recA ← | DNA recombination and repair protein; ssDNA‑dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP‑dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor |
| RA | 2,823,531 | A→G | 5.2% | V80A (GTG→GCG) | recA ← | DNA recombination and repair protein; ssDNA‑dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP‑dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor |
| RA | 2,866,487 | G→C | 6.3% | intergenic (+22/+72) | ygbN → / ← rpoS | putative transporter/RNA polymerase, sigma S (sigma 38) factor |
| RA | 2,866,488 | G→C | 6.2% | intergenic (+23/+71) | ygbN → / ← rpoS | putative transporter/RNA polymerase, sigma S (sigma 38) factor |
| RA | 2,906,607 | C→T | 5.1% | intergenic (+24/+36) | ygcG → / ← eno | TPM domain protein, putative phosphatase/enolase |
| RA | 2,907,998 | A→T | 5.2% | intergenic (‑57/+31) | eno ← / ← pyrG | enolase/CTP synthetase |
| RA | 2,972,652 | A→T | 5.2% | intergenic (+15/+17) | tas → / ← lplT | putative NADP(H)‑dependent aldo‑keto reductase/lysophospholipid transporter |
| RA | 3,024,014 | T→A | 5.5% | L900Q (CTG→CAG) | xdhD → | putative hypoxanthine oxidase, molybdopterin‑binding/Fe‑S binding |
| RA | 3,024,038 | G→C | 5.7% | G908A (GGC→GCC) | xdhD → | putative hypoxanthine oxidase, molybdopterin‑binding/Fe‑S binding |
| RA | 3,024,043 | T→A | 5.3% | F910I (TTC→ATC) ‡ | xdhD → | putative hypoxanthine oxidase, molybdopterin‑binding/Fe‑S binding |
| RA | 3,024,044 | T→A | 5.3% | F910Y (TTC→TAC) ‡ | xdhD → | putative hypoxanthine oxidase, molybdopterin‑binding/Fe‑S binding |
| RA | 3,024,049 | G→C | 5.6% | A912P (GCG→CCG) | xdhD → | putative hypoxanthine oxidase, molybdopterin‑binding/Fe‑S binding |
| RA | 3,082,708 | T→G | 5.0% | intergenic (+37/+169) | loiP → / ← speB | Phe‑Phe periplasmic metalloprotease, OM lipoprotein; low salt‑inducible; Era‑binding heat shock protein/agmatinase |
| RA | 3,082,715 | G→T | 5.9% | intergenic (+44/+162) | loiP → / ← speB | Phe‑Phe periplasmic metalloprotease, OM lipoprotein; low salt‑inducible; Era‑binding heat shock protein/agmatinase |
| RA | 3,082,716 | C→T | 6.4% | intergenic (+45/+161) | loiP → / ← speB | Phe‑Phe periplasmic metalloprotease, OM lipoprotein; low salt‑inducible; Era‑binding heat shock protein/agmatinase |
| RA | 3,172,619 | C→T | 9.4% | G30G (GGC→GGT) | mdaB → | NADPH quinone reductase |
| RA | 3,250,989 | G→C | 7.2% | intergenic (+35/‑35) | yqjF → / → yqjG | putative quinol oxidase subunit/putative S‑transferase |
| RA | 3,250,990 | A→T | 7.1% | intergenic (+36/‑34) | yqjF → / → yqjG | putative quinol oxidase subunit/putative S‑transferase |
| RA | 3,250,991 | A→T | 6.9% | intergenic (+37/‑33) | yqjF → / → yqjG | putative quinol oxidase subunit/putative S‑transferase |
| RA | 3,250,992 | G→C | 6.9% | intergenic (+38/‑32) | yqjF → / → yqjG | putative quinol oxidase subunit/putative S‑transferase |
| RA | 3,269,873 | C→A | 5.7% | intergenic (+271/+343) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,269,875 | T→A | 5.2% | intergenic (+273/+341) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,269,967 | C→T | 7.8% | intergenic (+365/+249) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,269,968 | G→T | 6.4% | intergenic (+366/+248) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,269,969 | A→C | 7.4% | intergenic (+367/+247) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,269,970 | A→G | 7.5% | intergenic (+368/+246) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,313,208 | T→A | 5.1% | intergenic (‑30/+134) | rbfA ← / ← infB | 30s ribosome binding factor/translation initiation factor IF‑2 |
| RA | 3,313,209 | T→C | 5.0% | intergenic (‑31/+133) | rbfA ← / ← infB | 30s ribosome binding factor/translation initiation factor IF‑2 |
| RA | 3,324,952 | A→G | 6.2% | intergenic (‑41/+49) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,324,955 | A→G | 6.2% | intergenic (‑44/+46) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,324,956 | C→T | 6.2% | intergenic (‑45/+45) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,324,959 | C→T | 6.2% | intergenic (‑48/+42) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,328,182 | A→T | 5.5% | intergenic (+99/+57) | yhbY → / ← greA | RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor |
| RA | 3,328,183 | T→A | 5.4% | intergenic (+100/+56) | yhbY → / ← greA | RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor |
| RA | 3,328,184 | A→T | 5.4% | intergenic (+101/+55) | yhbY → / ← greA | RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor |
| RA | 3,357,939 | G→A | 5.8% | G1072D (GGC→GAC) | gltB → | glutamate synthase, large subunit |
| RA | 3,368,189 | A→G | 7.3% | A121A (GCA→GCG) | yhcG → | DUF1016 family protein in the PD‑(D/E)XK nuclease superfamily |
| RA | 3,376,262 | C→A | 5.2% | intergenic (+26/+17) | dcuD → / ← sspB | putative transporter/ClpXP protease specificity enhancing factor |
| RA | 3,376,263 | C→G | 5.2% | intergenic (+27/+16) | dcuD → / ← sspB | putative transporter/ClpXP protease specificity enhancing factor |
| RA | 3,376,264 | T→G | 5.5% | intergenic (+28/+15) | dcuD → / ← sspB | putative transporter/ClpXP protease specificity enhancing factor |
| RA | 3,376,265 | G→C | 5.5% | intergenic (+29/+14) | dcuD → / ← sspB | putative transporter/ClpXP protease specificity enhancing factor |
| RA | 3,392,273 | A→T | 7.6% | intergenic (‑245/+185) | tldD ← / ← yhdP | putative peptidase/DUF3971‑AsmA2 domains protein |
| RA | 3,392,274 | A→T | 6.1% | intergenic (‑246/+184) | tldD ← / ← yhdP | putative peptidase/DUF3971‑AsmA2 domains protein |
| RA | 3,392,280 | T→G | 7.2% | intergenic (‑252/+178) | tldD ← / ← yhdP | putative peptidase/DUF3971‑AsmA2 domains protein |
| RA | 3,392,281 | T→C | 6.7% | intergenic (‑253/+177) | tldD ← / ← yhdP | putative peptidase/DUF3971‑AsmA2 domains protein |
| RA | 3,487,142 | G→A | 5.1% | A118T (GCA→ACA) | yhfK → | putative transporter, FUSC superfamily inner membrane protein |
| RA | 3,504,875 | T→G | 7.3% | intergenic (+92/+60) | frlR → / ← yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,569,431 | A→G | 5.4% | I630T (ATT→ACT) | glgX ← | glycogen debranching enzyme |
| RA | 3,569,436 | G→A | 5.4% | H628H (CAC→CAT) ‡ | glgX ← | glycogen debranching enzyme |
| RA | 3,569,437 | T→C | 5.4% | H628R (CAC→CGC) ‡ | glgX ← | glycogen debranching enzyme |
| RA | 3,569,442 | C→T | 5.3% | E626E (GAG→GAA) | glgX ← | glycogen debranching enzyme |
| RA | 3,647,670 | T→C | 5.0% | intergenic (+19/+35) | gor → / ← dinQ | glutathione oxidoreductase/UV‑inducible membrane toxin, DinQ‑AgrB type I toxin‑antitoxin system |
| RA | 3,647,672 | G→C | 5.1% | intergenic (+21/+33) | gor → / ← dinQ | glutathione oxidoreductase/UV‑inducible membrane toxin, DinQ‑AgrB type I toxin‑antitoxin system |
| RA | 3,647,673 | T→A | 6.0% | intergenic (+22/+32) | gor → / ← dinQ | glutathione oxidoreductase/UV‑inducible membrane toxin, DinQ‑AgrB type I toxin‑antitoxin system |
| RA | 3,647,674 | G→C | 5.8% | intergenic (+23/+31) | gor → / ← dinQ | glutathione oxidoreductase/UV‑inducible membrane toxin, DinQ‑AgrB type I toxin‑antitoxin system |
| RA | 3,648,128 | G→T | 6.9% | noncoding (66/84 nt) | agrA → | inactive antisense sRNA |
| RA | 3,648,129 | C→T | 7.0% | noncoding (67/84 nt) | agrA → | inactive antisense sRNA |
| RA | 3,648,130 | A→T | 7.0% | noncoding (68/84 nt) | agrA → | inactive antisense sRNA |
| RA | 3,648,131 | A→G | 7.1% | noncoding (69/84 nt) | agrA → | inactive antisense sRNA |
| RA | 3,648,132 | A→C | 6.7% | noncoding (70/84 nt) | agrA → | inactive antisense sRNA |
| RA | 3,657,599 | T→A | 6.3% | intergenic (+32/+387) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,657,601 | G→C | 6.2% | intergenic (+34/+385) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,657,603 | T→A | 6.4% | intergenic (+36/+383) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,663,555 | G→T | 5.4% | intergenic (+28/+335) | mdtF → / ← gadW | anaerobic multidrug efflux transporter, ArcA‑regulated/transcriptional activator of gadA and gadBC; repressor of gadX |
| RA | 3,760,722 | T→A | 6.2% | E176D (GAA→GAT) | selA ← | selenocysteine synthase |
| RA | 3,768,131 | A→T | 100% | pseudogene (911/945 nt) | rhsJ → | Rhs‑family protein |
| RA | 3,810,947 | A→G | 5.6% | I69T (ATC→ACC) | mutM ← | formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase |
| RA | 3,959,480 | A→T | 5.1% | intergenic (+35/+52) | ilvC → / ← ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
| RA | 3,959,481 | C→G | 5.0% | intergenic (+36/+51) | ilvC → / ← ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
| RA | 3,964,929 | C→T | 100% | E234E (GAG→GAA) | rhlB ← | ATP‑dependent RNA helicase |
| RA | 4,040,661 | G→A | 5.8% | intergenic (+25/+245) | rrfA → / ← mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| RA | 4,051,259 | G→T | 9.9% | noncoding (224/245 nt) | csrC → | CsrC sRNA sequesters CsrA, a carbon flux regulator |
| RA | 4,051,262 | A→C | 9.2% | noncoding (227/245 nt) | csrC → | CsrC sRNA sequesters CsrA, a carbon flux regulator |
| RA | 4,060,261 | G→T | 5.4% | intergenic (+31/‑186) | typA → / → yihL | GTP‑binding protein/putative DNA‑binding transcriptional regulator |
| RA | 4,122,331 | A→T | 5.8% | intergenic (‑44/+49) | hslV ← / ← ftsN | peptidase component of the HslUV protease/essential cell division protein |
| RA | 4,122,332 | A→T | 5.5% | intergenic (‑45/+48) | hslV ← / ← ftsN | peptidase component of the HslUV protease/essential cell division protein |
| RA | 4,122,333 | A→T | 5.8% | intergenic (‑46/+47) | hslV ← / ← ftsN | peptidase component of the HslUV protease/essential cell division protein |
| RA | 4,122,334 | A→T | 5.8% | intergenic (‑47/+46) | hslV ← / ← ftsN | peptidase component of the HslUV protease/essential cell division protein |
| RA | 4,153,570 | G→A | 6.7% | intergenic (‑472/+126) | ppc ← / ← argE | phosphoenolpyruvate carboxylase/acetylornithine deacetylase |
| RA | 4,168,349 | A→G | 8.4% | intergenic (+149/‑23) | rrsB → / → gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu |
| RA | 4,168,350 | A→T | 8.4% | intergenic (+150/‑22) | rrsB → / → gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu |
| RA | 4,168,351 | C→T | 8.3% | intergenic (+151/‑21) | rrsB → / → gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu |
| RA | 4,177,171 | T→A | 6.1% | intergenic (+43/‑187) | tufB → / → secE | translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit |
| RA | 4,177,172 | T→A | 6.0% | intergenic (+44/‑186) | tufB → / → secE | translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit |
| RA | 4,182,820 | C→T | 7.6% | H526Y (CAC→TAC) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,188,572 | C→T | 19.2% | R1075C (CGT→TGT) ‡ | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,188,573 | G→T | 75.1% | R1075L (CGT→CTT) ‡ | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,190,035 | C→G | 28.3% | R84G (CGT→GGT) | yjaZ → | stationary phase growth adaptation protein |
| RA | 4,252,936 | G→A | 5.8% | R144H (CGC→CAC) | ubiC → | chorismate‑‑pyruvate lyase |
| RA | 4,257,743 | T→C | 5.3% | M1T (ATG→ACG) † | dinF → | oxidative stress resistance protein; putative MATE family efflux pump; UV and mitomycin C inducible protein |
| RA | 4,257,747 | G→A | 5.2% | P2P (CCG→CCA) | dinF → | oxidative stress resistance protein; putative MATE family efflux pump; UV and mitomycin C inducible protein |
| RA | 4,257,748 | C→G | 5.3% | P3A (CCT→GCT) ‡ | dinF → | oxidative stress resistance protein; putative MATE family efflux pump; UV and mitomycin C inducible protein |
| RA | 4,257,749 | C→G | 5.3% | P3R (CCT→CGT) ‡ | dinF → | oxidative stress resistance protein; putative MATE family efflux pump; UV and mitomycin C inducible protein |
| RA | 4,257,750 | T→C | 5.3% | P3P (CCT→CCC) ‡ | dinF → | oxidative stress resistance protein; putative MATE family efflux pump; UV and mitomycin C inducible protein |
| RA | 4,257,754 | G→A | 6.3% | V5I (GTC→ATC) | dinF → | oxidative stress resistance protein; putative MATE family efflux pump; UV and mitomycin C inducible protein |
| RA | 4,291,512 | G→A | 9.4% | M1M (GTG→ATG) †‡ | nrfE → | heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE |
| RA | 4,291,513 | T→C | 9.4% | M1A (GTG→GCG) †‡ | nrfE → | heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE |
| RA | 4,296,060 | C→T | 39.3% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,332,868 | G→T | 5.9% | R135R (CGC→CGA) | basS ← | sensory histidine kinase in two‑component regulatory system with BasR |
| RA | 4,332,871 | A→C | 6.1% | S134R (AGT→AGG) | basS ← | sensory histidine kinase in two‑component regulatory system with BasR |
| RA | 4,335,654 | T→A | 5.6% | intergenic (‑64/+40) | eptA ← / ← adiC | lipid A phosphoethanolamine transferase/arginine:agmatine antiporter |
| RA | 4,335,655 | T→A | 5.1% | intergenic (‑65/+39) | eptA ← / ← adiC | lipid A phosphoethanolamine transferase/arginine:agmatine antiporter |
| RA | 4,353,172 | C→G | 5.4% | intergenic (+91/+28) | ghoT → / ← lysU | toxin of GhoTS toxin‑antitoxin pair; membrane‑lytic protein; stimulator of persister cell formation/lysine tRNA synthetase, inducible |
| RA | 4,376,280 | G→A | 5.1% | intergenic (+15/‑37) | efp → / → ecnA | polyproline‑specific translation elongation factor EF‑P/entericidin A membrane lipoprotein, antidote entericidin B |
| RA | 4,376,291 | T→C | 5.2% | intergenic (+26/‑26) | efp → / → ecnA | polyproline‑specific translation elongation factor EF‑P/entericidin A membrane lipoprotein, antidote entericidin B |
| RA | 4,422,887 | G→A | 5.5% | A14A (GCG→GCA) | ulaE → | L‑xylulose 5‑phosphate 3‑epimerase |
| RA | 4,426,592 | T→A | 7.1% | intergenic (+35/+36) | rplI → / ← yjfZ | 50S ribosomal subunit protein L9/uncharacterized protein |
| RA | 4,479,012 | A→T | 8.8% | intergenic (+123/+22) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| RA | 4,479,016 | G→C | 7.7% | intergenic (+127/+18) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| RA | 4,479,020 | A→T | 7.5% | intergenic (+131/+14) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 123032 | 127553 | 4522 | 41 [40] | [40] 41 | [aceE]–[aceF] | [aceE],[aceF] |
| * | * | ÷ | NC_000913 | 3423748–3424234 | 3424591–3424238 | 5–844 | 43 [39] | [38] 42 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 225078 = | NA (NA) | 15 (0.170) | 10/240 | NT | NA | noncoding (1308/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 225100 = | NA (NA) | noncoding (1330/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 6 (0.070) | 5/236 | NT | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 419210 = | 115 (1.220) | 9 (0.100) | 9/236 | NT | 7.8% | intergenic (+26/‑381) | phoR/brnQ | sensory histidine kinase in two‑component regulatory system with PhoB/branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val |
| ? | NC_000913 | 419234 = | 106 (1.210) | intergenic (+50/‑357) | phoR/brnQ | sensory histidine kinase in two‑component regulatory system with PhoB/branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val | |||||
| * | ? | NC_000913 | = 786738 | NA (NA) | 3 (0.030) | 3/240 | NT | NA | noncoding (4/35 nt) | REP70 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP70 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 786769 | NA (NA) | noncoding (35/35 nt) | REP70 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP70 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | 947028 = | 105 (1.120) | 6 (0.070) | 6/226 | NT | 6.1% | intergenic (+9/‑201) | ycaD/ycaM | putative MFS transporter, inner membrane protein/putative transporter |
| ? | NC_000913 | 947064 = | 91 (1.090) | intergenic (+45/‑165) | ycaD/ycaM | putative MFS transporter, inner membrane protein/putative transporter | |||||
| * | ? | NC_000913 | 1207790 = | 13 (0.140) | 8 (0.100) | 8/222 | NT | 46.6% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 7 (0.090) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 13 (0.140) | 13 (0.160) | 13/222 | NT | 58.6% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 7 (0.090) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1396531 = | NA (NA) | 3 (0.030) | 3/242 | NT | NA | noncoding (488/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 1428264 | NA (NA) | noncoding (531/1196 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 1751652 = | 76 (0.810) | 4 (0.040) | 4/240 | NT | 5.1% | coding (73/648 nt) | ydhW | FNR, Nar, NarP‑regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex |
| ? | NC_000913 | 1751699 = | 76 (0.850) | coding (26/648 nt) | ydhW | FNR, Nar, NarP‑regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex | |||||
| * | ? | NC_000913 | = 2508432 | 108 (1.150) | 6 (0.070) | 6/236 | NT | 5.7% | intergenic (‑190/+29) | fryB/glk | putative enzyme IIB component of PTS/glucokinase |
| ? | NC_000913 | = 2508438 | 99 (1.130) | intergenic (‑196/+23) | fryB/glk | putative enzyme IIB component of PTS/glucokinase | |||||
| * | ? | NC_000913 | 2690403 = | 73 (0.780) | 5 (0.050) | 5/254 | NT | 6.5% | coding (696/1428 nt) | glrK | sensor protein kinase regulating glmY sRNA in two‑component system with response regulator GlrR |
| ? | NC_000913 | 2690426 = | 72 (0.760) | coding (673/1428 nt) | glrK | sensor protein kinase regulating glmY sRNA in two‑component system with response regulator GlrR | |||||
| * | ? | NC_000913 | 2729468 = | 50 (0.530) | 11 (0.120) | 5/238 | NT | 21.0% | intergenic (‑24/+148) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon |
| ? | NC_000913 | = 4168351 | 36 (0.410) | intergenic (+151/‑21) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913 | 3269866 = | 111 (1.180) | 6 (0.070) | 6/246 | NT | 6.2% | intergenic (+264/+350) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| ? | NC_000913 | 3269959 = | 73 (0.800) | intergenic (+357/+257) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component | |||||
| * | ? | NC_000913 | 3470277 = | NA (NA) | 4 (0.040) | 4/240 | NT | NA | coding (1053/1185 nt) | tufA | translation elongation factor EF‑Tu 1 |
| ? | NC_000913 | 3470311 = | NA (NA) | coding (1019/1185 nt) | tufA | translation elongation factor EF‑Tu 1 | |||||
| * | ? | NC_000913 | = 3625632 | NA (NA) | 3 (0.030) | 3/242 | NT | NA | noncoding (44/82 nt) | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 3625670 | NA (NA) | noncoding (82/82 nt) | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | 3726887 = | 102 (1.080) | 5 (0.060) | 5/232 | NT | 5.1% | intergenic (+5/+37) | wecH/yiaA | O‑acetyltransferase for enterobacterial common antigen (ECA)/YiaAB family inner membrane protein, tandem domains |
| ? | NC_000913 | 3726917 = | 92 (1.070) | intergenic (+35/+7) | wecH/yiaA | O‑acetyltransferase for enterobacterial common antigen (ECA)/YiaAB family inner membrane protein, tandem domains | |||||
| * | ? | NC_000913 | = 4040683 | 90 (0.960) | 23 (0.250) | 10/250 | NT | 17.9% | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913 | = 4213162 | 122 (1.320) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913 | = 4040727 | 74 (0.790) | 7 (0.080) | 5/236 | NT | 9.5% | intergenic (+91/+179) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913 | = 4171852 | 65 (0.740) | intergenic (+96/‑205) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| * | ? | NC_000913 | 4040782 = | 67 (0.710) | 5 (0.060) | 5/238 | NT | 7.7% | intergenic (+146/+124) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913 | 4171897 = | 57 (0.650) | intergenic (+141/‑160) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| * | ? | NC_000913 | = 4089688 | 72 (0.760) | 4 (0.050) | 4/238 | NT | 5.3% | coding (168/1749 nt) | frvR | putative frv operon regulator; contains a PTS EIIA domain |
| ? | NC_000913 | = 4089704 | 75 (0.850) | coding (152/1749 nt) | frvR | putative frv operon regulator; contains a PTS EIIA domain | |||||
| * | ? | NC_000913 | 4122323 = | 90 (0.960) | 6 (0.070) | 6/238 | NT | 6.7% | intergenic (‑36/+57) | hslV/ftsN | peptidase component of the HslUV protease/essential cell division protein |
| ? | NC_000913 | 4122343 = | 82 (0.930) | intergenic (‑56/+37) | hslV/ftsN | peptidase component of the HslUV protease/essential cell division protein | |||||
| * | ? | NC_000913 | = 4512524 | 73 (0.780) | 5 (0.060) | 5/240 | NT | 6.9% | coding (886/999 nt) | fecC | ferric citrate ABC transporter permease |
| ? | NC_000913 | = 4512556 | 67 (0.750) | coding (854/999 nt) | fecC | ferric citrate ABC transporter permease | |||||
| * | ? | NC_000913 | 4542682 = | 89 (0.950) | 29 (0.330) | 27/236 | NT | 23.7% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 104 (1.190) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 4542690 | 87 (0.920) | 30 (0.340) | 28/236 | NT | 24.5% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 104 (1.190) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||