| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,729,475:4 | +A | 5.5% | intergenic (‑31/+141) | gltW ← / ← rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,729,475 | 4 | . | A | 5.5% | 253.7 / 12.4 | 73 | intergenic (‑31/+141) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon |
| Reads supporting (aligned to +/- strand): ref base . (31/38); new base A (2/2); total (33/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.39e-01 | |||||||||||
GAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGG > NC_000913/2729328‑2729620 | gagaTATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGata < 3:314695/148‑1 (MQ=32)gagaTATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGata < 7:356320/148‑1 (MQ=32) agaTATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATA‑‑‑‑‑tt > 2:364809/1‑149 (MQ=32) gaTATTGAGGTCGGCGACTTTCACTCACAAACCATCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATA‑‑‑‑‑ttt < 6:76076/149‑1 (MQ=17) gaTATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATA‑‑‑‑‑ttt > 1:114339/1‑149 (MQ=32) tatTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATA‑‑‑‑‑TTTTc < 4:270926/149‑1 (MQ=32) tatTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATA‑‑‑‑‑TTTTc < 1:413744/149‑1 (MQ=32) tatTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGATGCGTGATA‑‑‑‑‑TTTTc < 3:176996/149‑1 (MQ=17) atTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATA‑‑‑‑‑TTTTc < 2:399446/148‑1 (MQ=32) ttGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATGCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATA‑‑‑‑‑TTTTCgt < 3:130931/149‑1 (MQ=17) tGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATA‑‑‑‑‑TTTTCgtg > 6:400410/1‑149 (MQ=31) tctgatgaaaagtgaatagcaaggcgtttacgcgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcgttGCGAGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCCTTaa < 2:14857‑M1/35‑1 (MQ=255) tctgatgaaaagtgaatagcaaggcgattacgcgttgggagtcaggctgaagagtataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatgacgcgttGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTaa > 1:14857‑M1/114‑148 (MQ=255) actaaCCAGCTAGTGGCGTCCCCTAGGTGATTCGAACCCCTGTTACCGCCGGGTACGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATATCGCGTTGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTaa < 1:425251/144‑1 (MQ=1) acgcgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagatcaccctacacgaaaattgcttatcacgcgttGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATtctc > 6:415359‑M1/90‑148 (MQ=255) tgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacGCGTGata > 4:181171‑M1/67‑74 (MQ=255) gagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcgttGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTaa > 3:398115‑M1/63‑97 (MQ=255) gagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcgttGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTaa < 4:398115‑M1/35‑1 (MQ=255) gtgtCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCa < 6:235253/149‑1 (MQ=32) tCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACtt < 2:205750/149‑1 (MQ=32) tCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACtt > 7:62822/1‑149 (MQ=32) tCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACt < 1:208386/148‑1 (MQ=32) ccTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACttt > 1:405634/1‑149 (MQ=32) cTGGGCCTCTAGACGAAGGGGACATGAAAATTGCTTATCACGCGTTGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACtttt > 3:320087/1‑149 (MQ=17) cTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACtttt > 1:410888/1‑149 (MQ=32) tGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCa < 7:332479/143‑1 (MQ=32) tGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCa > 8:332479/1‑143 (MQ=32) gggCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtca > 5:457447/1‑149 (MQ=34) ggCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtc < 1:270591/147‑1 (MQ=33) ggCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtc < 8:180762/147‑1 (MQ=33) gCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtcatc < 2:343300/149‑1 (MQ=35) ccTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtcatca < 2:95535/149‑1 (MQ=37) tctAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGa > 8:438994/1‑149 (MQ=37) gACGCAGGGGACACGAAAATTGCTTATCTCGCGTTGCGTGATA‑‑‑‑‑TTTTCGGGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtcat < 8:221815/141‑1 (MQ=255) gACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACtttt > 2:174668/1‑138 (MQ=33) gACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACtttt < 1:174668/138‑1 (MQ=33) gACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTGTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCCCTCCCAACGCGTAAACGCCTTGCTATTCACTTTtcat > 7:221815/1‑141 (MQ=25) aCGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATc < 5:7558/149‑1 (MQ=37) gAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCtg > 1:40224/1‑149 (MQ=37) aaGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCtgt < 8:108370/149‑1 (MQ=37) ggggACACGAAAATTGCTTATCACGCGTTGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCtgtgt < 2:40224/149‑1 (MQ=37) ggggACACGAAAATTGCTTATCACGCGTTGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCtgtgt < 6:457447/149‑1 (MQ=37) gACACGAAAATTGCTTATCACGCGTTGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAg > 6:390303/1‑149 (MQ=37) acGAAAATTGCTTATCACGCGTTGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAAt > 5:47971/1‑137 (MQ=37) acGAAAATTGCTTATCACGCGTTGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAAt < 6:47971/137‑1 (MQ=37) acGAAAATTGCTTATCACGCGTTGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCAc > 8:96711/1‑149 (MQ=37) tacacgaaaatatcacgcaacGCGTGATAAGCAATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCtgtgt < 1:434900‑M1/125‑1 (MQ=255) gAAAATTGCTTATCACGCGTTGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTg < 7:438994/149‑1 (MQ=38) aaaaTTGCTTATCACGCGTTGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCCTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGc < 5:230965/149‑1 (MQ=38) cacgaaaatatcacgcaacGCGTGATAAGCAATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGa > 2:434900‑M1/20‑146 (MQ=255) aaTTGCTTATCACGCGTTGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCa > 5:92750/1‑148 (MQ=39) aTTGCTTATCACGCGTTGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCaaa < 5:390303/149‑1 (MQ=39) ttGCTTATCACGCGTTGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCATCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAg > 2:66765/1‑149 (MQ=255) gaaaatatcacgcaacGCGTGATAAGCAATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTTTTCActttc < 4:375386‑M1/108‑2 (MQ=255) gaaaatatcacgcaacGCGTGATAAGCAATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTTTTCActttc > 3:375386‑M1/17‑123 (MQ=255) tGCTTATCACGCGTTGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACTCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAg > 4:41623/1‑148 (MQ=255) aatatcacgcaacGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtc < 5:245074‑M1/104‑1 (MQ=255) aatatcacgcaacGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtc > 6:245074‑M1/14‑117 (MQ=255) ttATCACGCGTTGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCtgt < 1:140954/130‑1 (MQ=38) ttATCACGCGTTGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCtgt > 2:140954/1‑130 (MQ=38) aTCACGCGTTGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGct > 1:6795/1‑149 (MQ=39) gcgTTGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGcttctt > 7:415878/1‑148 (MQ=39) cgTTGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTta < 2:6795/149‑1 (MQ=39) gTTGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTCATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTtaa < 8:296446/149‑1 (MQ=255) gTTGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCttt > 2:41678/1‑147 (MQ=39) gTTGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTtaa < 3:123936/149‑1 (MQ=39) ttGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTtaag < 8:415878/149‑1 (MQ=39) GCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTtaagg < 5:376942‑M1/148‑1 (MQ=255) TGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTtaaggtaag > 6:92750‑M1/1‑149 (MQ=255) GATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTaaa > 5:344969‑M1/1‑80 (MQ=255) GATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTaaa < 6:344969‑M1/80‑1 (MQ=255) GATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGcttctt < 5:348986‑M1/139‑1 (MQ=255) GATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGcttctt > 6:348986‑M1/1‑139 (MQ=255) ATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAACGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTCCAAAGTACGCTTCTTtaaggtaagg > 1:61717‑M1/1‑148 (MQ=255) ATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGcttc > 5:340098‑M1/1‑136 (MQ=255) ATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGcttc < 6:340098‑M1/136‑1 (MQ=255) ATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTtaaggtaag < 1:228107‑M1/147‑1 (MQ=255) A‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCAc > 2:239540‑M1/1‑119 (MQ=255) A‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCAc < 1:239540‑M1/119‑1 (MQ=255) | GAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATA‑‑‑‑‑TTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGG > NC_000913/2729328‑2729620 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |