mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 41 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4528083 = | 98 (1.040) | 4 (0.050) | 4/234 | NT | 4.7% | intergenic (+17/+28) | ryjB/sgcQ | novel sRNA, function unknown/putative nucleoside triphosphatase |
| ? | NC_000913 | 4528108 = | 72 (0.830) | intergenic (+42/+3) | ryjB/sgcQ | novel sRNA, function unknown/putative nucleoside triphosphatase | |||||
| * | ? | NC_000913 | = 4512063 | 111 (1.180) | 3 (0.030) | 3/234 | NT | 3.1% | coding (352/957 nt) | fecD | ferric citrate ABC transporter permease |
| ? | NC_000913 | = 4512138 | 87 (1.000) | coding (277/957 nt) | fecD | ferric citrate ABC transporter permease | |||||
| * | ? | NC_000913 | = 4372705 | 76 (0.810) | 3 (0.030) | 4/238 | NT | 3.9% | intergenic (+34/‑104) | groL/yjeI | Cpn60 chaperonin GroEL, large subunit of GroESL/DUF4156 family lipoprotein |
| ? | NC_000913 | = 4372719 | 78 (0.880) | intergenic (+48/‑90) | groL/yjeI | Cpn60 chaperonin GroEL, large subunit of GroESL/DUF4156 family lipoprotein | |||||
| * | ? | NC_000913 | = 4347375 | 109 (1.160) | 4 (0.050) | 3/236 | NT | 3.6% | intergenic (‑49/+29) | fumB/dcuB | anaerobic class I fumarate hydratase (fumarase B)/C4‑dicarboxylate transporter, anaerobic; DcuS co‑sensor |
| ? | NC_000913 | = 4347385 | 112 (1.280) | intergenic (‑59/+19) | fumB/dcuB | anaerobic class I fumarate hydratase (fumarase B)/C4‑dicarboxylate transporter, anaerobic; DcuS co‑sensor | |||||
| * | ? | NC_000913 | 4335640 = | 110 (1.170) | 4 (0.050) | 6/226 | NT | 4.1% | intergenic (‑50/+54) | eptA/adiC | lipid A phosphoethanolamine transferase/arginine:agmatine antiporter |
| ? | NC_000913 | 4335670 = | 90 (1.080) | intergenic (‑80/+24) | eptA/adiC | lipid A phosphoethanolamine transferase/arginine:agmatine antiporter | |||||
| * | ? | NC_000913 | 4257736 = | 104 (1.100) | 5 (0.060) | 5/240 | NT | 4.6% | intergenic (+13/‑6) | lexA/dinF | transcriptional repressor of SOS regulon/oxidative stress resistance protein; putative MATE family efflux pump; UV and mitomycin C inducible protein |
| ? | NC_000913 | 4257762 = | 107 (1.200) | coding (21/1380 nt) | dinF | oxidative stress resistance protein; putative MATE family efflux pump; UV and mitomycin C inducible protein | |||||
| * | ? | NC_000913 | = 4146512 | 109 (1.160) | 3 (0.030) | 4/250 | NT | 2.7% | coding (255/879 nt) | pflC | putative [formate‑C‑acetyltransferase 2]‑activating enzyme; pyruvate formate‑lyase 1‑activating enzyme |
| ? | NC_000913 | = 4146527 | 107 (1.150) | coding (270/879 nt) | pflC | putative [formate‑C‑acetyltransferase 2]‑activating enzyme; pyruvate formate‑lyase 1‑activating enzyme | |||||
| * | ? | NC_000913 | 4146304 = | 103 (1.090) | 3 (0.030) | 3/242 | NT | 3.0% | coding (47/879 nt) | pflC | putative [formate‑C‑acetyltransferase 2]‑activating enzyme; pyruvate formate‑lyase 1‑activating enzyme |
| ? | NC_000913 | 4146326 = | 93 (1.040) | coding (69/879 nt) | pflC | putative [formate‑C‑acetyltransferase 2]‑activating enzyme; pyruvate formate‑lyase 1‑activating enzyme | |||||
| * | ? | NC_000913 | = 4032631 | 93 (0.990) | 3 (0.030) | 3/244 | NT | 3.2% | coding (140/615 nt) | yigZ | UPF0029 family protein |
| ? | NC_000913 | = 4032664 | 91 (1.010) | coding (173/615 nt) | yigZ | UPF0029 family protein | |||||
| * | ? | NC_000913 | 3698459 = | 93 (0.990) | 4 (0.040) | 4/242 | NT | 4.2% | coding (246/1680 nt) | bcsG | DUF3260 family cellulose production inner membrane protein |
| ? | NC_000913 | 3698508 = | 92 (1.030) | coding (295/1680 nt) | bcsG | DUF3260 family cellulose production inner membrane protein | |||||