| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4528083 = | 98 (1.040) | 4 (0.050) | 4/234 | NT | 4.7% | intergenic (+17/+28) | ryjB/sgcQ | novel sRNA, function unknown/putative nucleoside triphosphatase |
| ? | NC_000913 | 4528108 = | 72 (0.830) | intergenic (+42/+3) | ryjB/sgcQ | novel sRNA, function unknown/putative nucleoside triphosphatase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACAACTCAGTATCGCCGATGGCTGTGTGACCGCAACCACCTTTAAAAAGGACGGCGTTTTTGCCAATTTCGTTGACCAGGCGCGAGTCAGTCAGTTTATGGAGAAAGTGCATCATATACGCCGATAAGATGGGGATAAGCAGAGCGCTTATCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4528237‑4528083‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcttatccccATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACTCGCGCCTGGTCAACGAAATTGGCAAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAG > NC_000913/4528108‑4528254 ACAACTCAGTATCGCCGATGGCTGTGTGACCGCAACCACCTTTAAAAAGGACGGCGTTTTTGCCAATTTCGTTGACCAGGCGCGAGTCAGTCAGTTTATGGAGAAAGTGCATCATATACGCCGATAAGATGGGGATAAGCAGAGCGCTT < 5:38529/149‑1ACAAATCAGTATCGCCGATGGCTGTGTGACCGCAACCACCTTTAAAAAGGACGGCGTTTTTGCCAATTTCGTTGACCAGGCGCGAGTCAGTCAGTTTATGGAGAAAGTGCATCATATACGCCGATAAGATGGGGATAAGCAGAGCGCTT < 5:31770/149‑1 CTCAGTATCGCCGATGGCTGTGTGACCGCAACCACCTTTAAAAAGGACGGCGTTTTTGCCAATTTCGTTGACCAGGCGCGAGTCAGTCAGTTTATGGAGAAAGTGCATCATATACGCCGATAAGATGGGGATAAGCAGAGCGCTTATCC > 1:38142/1‑149 CTCAGTATCGCCGATGGCTGTGTGACCGCAACCACCTTTAAAAAGGACGGCGTTTTTGCCAATTTCGTTGACCAGGCGCGAGTCAGTCAGTTTATGGAGAAAGTGCATCATATACGCCGATAAGATGGGGATAAGCAGAGCGCTTATCC > 8:309305/1‑149 CGCAACCACCTTTAAAAAGGACGGCGTTTTTGCCAATTTCGTTGACCAGGCGCGAGTCAGTCAGTTTATGGAGAAAGTGCATCATATACGCCGATAAGATGGGGATAAGCAGAGCGC > 6:389561/1‑117 CGCAACCACCTTTAAAAAGGACGGCGTTTTTGCCAATTTCGTTGACCAGGCGCGAGTCAGTCAGTTTATGGAGAAAGTGCATCATATACGCCGATAAGATGGGGATAAGCAGAGCGC < 5:389561/117‑1 CGGCGTTTTTGCCAATTTCGTTGACCAGGCGCGAGTCAGTCAGTTTATGGAGAAAGTGCATCATATACGCCGATAAGATGGGGATAAGCGCTCTGCTTATCCCCATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGA < 6:57891/144‑1 CGGCGTTTTTGCCAATTTCGTTGACCAGGCGCGAGTCAGTCAGTTTATGGAGAAAGTGCATCATATACGCCGATAAGATGGGGATAAGCGCTCTGCTTATCCCCATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGA > 5:57891/1‑144 GTCAGTTTATGGAGAAAGTGCATCATATACGCCGATAAGATGGGGATAAGCGCTCTGCTTATCCCCATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACTCGCGCCTGGTCAACGAAATTGGCAAAAACGCCGTCCT > 2:38142/1‑149 GATGGGGATAAGCAGAGCGCTTATCCCCATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACACGCGCCTGGTCAACGAAATTGGCAAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATA > 1:404154/1‑149 GCTTATCCCCATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACTCGCGCCTGGTCAACGAAATTGGCAAAAACGCCGACCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACG > 6:403894/1‑149 CTTATCCCCATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACTCGCGCCTGGTCAACGAAATTGGCAAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCAC < 1:381033/147‑1 CTTATCCCCATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACTCGCGCCTGGTCAACGAAATTGGCAAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCAC < 4:430169/147‑1 ATCCCCATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACTCGCGCCTGGTCAACGAAATTGGCAAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTT > 3:236970/1‑149 TCCCCATCATATCGGCGTATATTATGCACTTTCTACATTAACTGACTGACTCGCGCCTGGTCTTAGAAATTGGCAAAAACGGCGTCCTTTTTAAAGGTTGTTGCGTTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTC < 4:319205/149‑1 CCCCATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACTCGCGCCTGGTCAACGAAATTGGCAAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGT < 5:221414/134‑1 CCCCATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACTCGCGCCTGGTCAACGAAATTGGCAAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGT > 6:221414/1‑134 CCCCATCTTAGCGGCGTATATGATGCACTTTCGCCATAAACTGACTGACTCGCTCATGGTCCACGAAATTGGCAAAAACGCCGTCCTTTTTAAAGGTGGGTGAGGTCACCCAGCCATCGGCGCTACTGAGTTGTTCCTCCACGTTTTC > 3:236182/1‑148 CCCATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACTCGCGCCTGGTCAACGAAATTGGCAAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCA < 4:236970/149‑1 CCCATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACTCGCGCCTGGTCAACGAAATTGGCAAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCC < 7:91876/148‑1 CCCATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACTCGCGCCTGGTCAACGAAATTGGCAAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGG < 4:242767/119‑1 CCCATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACTCGCGCCTGGTCAACGAAATTGGCAAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGG > 3:242767/1‑119 CCATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGCCTGACTCGCGCCTGGTCAACGAAATTGGCAAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGTCGATACTGAGTTGTTACTCCACGTTTTCCAG > 6:107634/1‑149 CCATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACTCGCGCCTGGTCAACGAAATTGGCAAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAG > 5:321926/1‑149 CCATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACTCGCGCCTGGTCAACGAAATTGGCAAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAG > 1:59538/1‑149 CCATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACTCGCGCCTGGTCAACGAAATTGGCAAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATA > 5:94869/1‑123 CCATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACTCGCGCCTGGTCAACGAAATTGGCAAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATA < 6:94869/123‑1 CCATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACTCGCGCCTGGTCAACGAAATTGGCAAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATA > 7:249762/1‑123 CCATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACTCGCGCCTGGTCAACGAAATTGGCAAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATA < 8:249762/123‑1 ACAACTCAGTATCGCCGATGGCTGTGTGACCGCAACCACCTTTAAAAAGGACGGCGTTTTTGCCAATTTCGTTGACCAGGCGCGAGTCAGTCAGTTTATGGAGAAAGTGCATCATATACGCCGATAAGATGGGGATAAGCAGAGCGCTTATCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4528237‑4528083‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcttatccccATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACTCGCGCCTGGTCAACGAAATTGGCAAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAG > NC_000913/4528108‑4528254 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |