New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 419210 =115 (1.220)9 (0.100) 9/236 NT 7.8% intergenic (+26/‑381) phoR/brnQ sensory histidine kinase in two‑component regulatory system with PhoB/branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val
?NC_000913 419234 = 106 (1.210)intergenic (+50/‑357) phoR/brnQ sensory histidine kinase in two‑component regulatory system with PhoB/branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val

Only 100 of 150 total aligned reads displayed.

GATCGTGAAACATGCTGTGAATCATCACGAAAGTCGCCTGAATATTGAGAGTACAGTAGGAAAAGGAACACGTTTCAGTTTTGTTATCCCGGAACGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAGTGTTTTATACTGGTTGGTGATTTCTTATCGCTA  >  NC_000913/419064‑419357
                                                                                                                                                  |                                                                                                                                                     
    gTGAAACATGCTGTGAATCATCACGAAAGTCGCCTGAATATTGAGAGTACAGTAGGAAAAGGAACACGTTTCAGTTTTGTTATCCCGGAACGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGcc                                                                                                                                                 <  3:125406/149‑1 (MQ=255)
     taaaaaccagaggtatatagcgataagaaatcaccaaccagtataaaacactatttccgtgaaaaagacatggctaatcatgcgaacaaaaaatcaccaatcgttgtaaaatctaacgcccgtattttgcctgcaaagaaaATAAGc                                                                                                                                                  <  6:55354‑M1/6‑1 (MQ=255)
     taaaaaccagaggtatatagcgataagaaatcaccaaccagtataaaacactatttccgtgaaaaagacatggctaatcatgcgaacaaaaaatcaccaatcgttgtaaaatctaacgcccgtattttgactgcaaagaaaATAaga                                                                                                                                                  <  6:412352‑M1/6‑2 (MQ=255)
     taaaaaccagaggtatatagcgataagaaatcaccaaccagtataaaacactatttccgtgaaaaagacatggctaatcatgcgaacaaaaaatcaccaatcgttgtaaaatctaacgcccgtattttgactgcaaagaaaATAAGc                                                                                                                                                  <  1:97838‑M1/6‑1 (MQ=255)
      aaaaaccagaggtatatagcgataagaaatcaccaaccagtataaaacactatttccgtgaaaaagacatggctaatcatgcgaacaaaaaatcaccaatcgttgtaaaatctaacgcccgtattttgactgcaaagaaaATAAGCCAg                                                                                                                                               <  4:232169‑M1/9‑1 (MQ=255)
       aaaaccagaggtatatagcgataagaaatctccaaccagtataaaacactatttccgtgaaaatgacatggctaatcatgcgaacaaaaaatcaccaatcgttgtaaaatctaacgcccgtattttgactgcaaagtaaATAAGCCa                                                                                                                                                >  5:189234‑M1/140‑147 (MQ=255)
       aaaaccagaggtatatagcgataagaaatcaccaaccagtataaaacactatttccgtgaaaaagacatggctaatcatgcgaacaaaaaatcaccaatcgttgtaaaatctaacgcccgtattttgactgcaaagaaaATAAGc                                                                                                                                                  >  5:314838‑M1/140‑145 (MQ=255)
       aaaaccagaggtatatagcgataagaaatcaccaaccagtataaaacactatttccgtgaaaaagacatggctaatcatgcgaacaaaaaatcaccaatcgttgtaaaatctaacgcccgtattttgactgcaaagaaaATAAGCCa                                                                                                                                                >  5:126992‑M1/140‑147 (MQ=255)
               tgtgAATCATCACGAAAGTCGCCTGAATATTGAGAGTACAGTAGGAAAAGGAACACGTTTCAGTTTTGTTATCCCGGAACGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTg                                                                                                                                    >  3:232169/1‑149 (MQ=255)
                 tgAATCATCACGAAAGTCGCCTGAATATTGAGAGTACAGTAGGAAAAGGAACACGTTTCAGTTTTGTTATCCCGGAACGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGc                                                                                                                                  >  7:285798/1‑149 (MQ=255)
                   atatagcgataagaaatcaccaaccagtataaaacactatttccgtgaaaaagacatggctaatcatgcgaacaaaaaatcaccaatcgttgtaaaatctaacgcccgtattttgactgcaaagaaaATAAGc                                                                                                                                                  >  1:160985‑M1/128‑133 (MQ=255)
                   atatagcgataagaaatcaccaaccagtataaaacactatttccgtgaaaaagacatggctaatcatgcgaacaaaaaatcaccaatcgttgtaaaatctaacgcccgtattttgactgcaaagaaaATAAGc                                                                                                                                                  <  2:160985‑M1/6‑1 (MQ=255)
                   aaTCATCACGAAAGTCGCCTGAATATTGAGAGTACAGTAGGAAAAGGAACACGTTTCAGTTTTGTTATCCCGGAACGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCt                                                                                                                                 <  7:468980/148‑1 (MQ=255)
                     tcatcaCGAAAGTCGCCTGAATATTGAGAGTACAGTAGGAAAAGGAACACGTTTCAGTTTTGTTATCCCGGAACGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTAt                                                                                                                              >  3:302736/1‑149 (MQ=255)
                        tcaCGAAAGTCGCCTGAATATTGAGAGTACAGTAGGAAAAGGAACACGTTTCAGTTTTGTTATCCCGGAACGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTAtttt                                                                                                                           >  5:78348/1‑149 (MQ=255)
                        tcaCGAAAGTCGCCTGAATATTGAGAGTACAGTAGGAAAAGGAACACGTTTCAGTTTTGTTATCCCGGAACGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCAT‑AGCCAG‑‑TCGATGCTGGCTTATTTTc                                                                                                                          >  3:84850/1‑149 (MQ=255)
                          aCGAAAGTCGCCTGAATATTGAGAGTACAGTAGGAAAAGGAACACGTTTCAGTTTTGTTATCCCGGAACGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCt                                                                                                                         <  1:131050/149‑1 (MQ=255)
                          aCGAAAGTCGCCTGAATATTGAGAGTACAGTAGGAAAAGGAACACGTTTCAGTTTTGTTATCCCGGAACGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCt                                                                                                                         >  3:158354/1‑149 (MQ=255)
                          aCGAAAGTCGCCTGAATATTGAGAGTACAGTAGGAAAAGGAACACGTTTCAGTTTTGTTATCCCGGAACGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCt                                                                                                                         >  1:105352/1‑149 (MQ=255)
                            gAAAGTCGCCTGAATATTGAGAGTACAGTAGGAAAAGGAACACGTTTCAGTTTTGTTATCCCGGAACGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCttt                                                                                                                       <  4:405822/149‑1 (MQ=255)
                             aaaGTCGCCTGAATATTGAGAGTACAGTAGGAAAAGGAACACGTTTCAGTTTTGTTATCCCGGAACGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTg                                                                                                                      <  6:78348/149‑1 (MQ=255)
                                gTCGCCTGAATATTGAGAGTACAGTAGGAAAAGGAACACGTTTCAGTTTTGTTATCCCGGAACGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAg                                                                                                                   <  4:158354/149‑1 (MQ=255)
                                    gcTGAATATTGAGAGTTCTGGAGGAAAAGGAATCCGTTTCAGTTTTGTTCTCCCGGCACGTTTAAATGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGGCaa                                                                                                               <  2:324818/148‑1 (MQ=255)
                                     cTGAATATTGAGAGTACAGTAGGAAAAGGAACACGTTTCAGGTTTGTTATCCCGGAACGTTTAATTGCCAAAAACAGCGAATAATAATCCTTTGTCATCTTTTATTGACATAAGACAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCaa                                                                                                               >  4:99676/1‑148 (MQ=255)
                                       caaccagtataaaacactatttccgtgaaaaagacatggctaatcatgcgaacaaaaaatcaccaatcgttgtaaaatctaacgcccgtattttgactgcaaagaaaATAAGCCAG‑‑TCGATGCTGGCTTAtt                                                                                                                             <  5:412292‑M1/25‑1 (MQ=255)
                                         atatTGAGAGTACAGTAGGAAAAGGAACACGTTTCAGTTTTGTTATCCCGGAACGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATAc                                                                                                          <  4:318285/149‑1 (MQ=255)
                                         atatTGAGAGTACAGTAGGAAAAGGAACACGTTTCAGTTTTGTTATCCCGGAACGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATAc                                                                                                          >  7:316234/1‑149 (MQ=255)
                                              gagaGTACAGTAGGAAAAGGAACACGTTTCAGTTTTGTTATCCCGGAACGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGc                                                                                                      <  8:285798/148‑1 (MQ=255)
                                              gagaGTACAGTAGGAAAAGGAACACGTTTCAGTTTTGTTATCCCGGAACGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCg                                                                                                     >  3:427180/1‑149 (MQ=255)
                                              gagaGTACAGTAGGAAAAGGAACACGTTTCAGTTTTGTTATCCCGGAACGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCg                                                                                                     >  1:283457/1‑149 (MQ=255)
                                                taaaacactatttccgagaaaaagacatggctaatcatgcgaacaaaaaatcaccaatcgttgtaaaatctaacgcccgtattttgactgcaaagaaaATAAGCCAG‑‑TCGATGCTGGCTTa                                                                                                                               <  1:390723‑M1/23‑1 (MQ=255)
                                                      aGTAGGAAAAGGAACACGTTTCAGTTTTGTTATCCCGGAACGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGAttt                                                                                             >  3:398809/1‑149 (MQ=255)
                                                        tAGGAAAAGGAACACGTTTCAGTTTTGTTATCCCGGAACGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACTGGCGTTAGATTTTa                                                                                           >  5:459234/1‑149 (MQ=255)
                                                        tAGGAAAAGGAACACGTTTCAGTTTTGTTATCCCGGAACGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTa                                                                                           <  1:324712/149‑1 (MQ=255)
                                                         aGGAAAAGGAACACGTTTCAGTTTTGTTATCCCGGAACGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTa                                                                                           <  8:410788/148‑1 (MQ=255)
                                                             aaaGGAACACGTTTCAGTTTTGTTATCCCGGAACGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATaa                                                                                                                                                    <  8:263790/89‑1 (MQ=255)
                                                             aaaGGAACACGTTTCAGTTTTGTTATCCCGGAACGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATaa                                                                                                                                                    >  7:263790/1‑89 (MQ=255)
                                                               aGGAACACGTTTCAGTTTTGTTATCCCGGAACGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGAt                                                                                    <  2:466244/149‑1 (MQ=255)
                                                                ggAACACGTTTCAGTTTTGTTATCCCGGAACGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGAtt                                                                                   <  8:177239/149‑1 (MQ=255)
                                                                ggAACACGTTTCAGTTTTGTTATCCCGGAACGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGAtt                                                                                   <  4:369314/149‑1 (MQ=255)
                                                                 gAACACGTTTCAGTTTTGTTATCCCGGAACGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTg                                                                                  >  1:235815/1‑149 (MQ=255)
                                                                     acGTTTCAGTTTTGTTATCCCGGAACGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGa                                                                              <  8:316234/149‑1 (MQ=255)
                                                                       gTTTCAGTTTTGTTATCCCGGAACGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGAtt                                                                            >  2:97838/1‑149 (MQ=255)
                                                                        tttCAGTTTTGTTATCCCGGAACGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGAttt                                                                           >  1:296789/1‑149 (MQ=255)
                                                                          tCAGTTTTGTTATCCCGGAACGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGAtttt                                                                          <  2:211519/148‑1 (MQ=255)
                                                                          tCAGTTTTGTTATCCCGGAACGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGAtttt                                                                          <  1:417054/148‑1 (MQ=255)
                                                                            aGTTTTGTTATCCCGGAACGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGAtttttt                                                                        <  2:283457/148‑1 (MQ=255)
                                                                             gctaatcatgcgaacaaaaaatcaccaatcgttgtaaaatctaacgcccgtattttgactgcaaagaaaATAAGCCAGCATCGA‑G‑TGGCTTATTTTCTTTGGAGGCAAAATAGGGGCGTTAGAGTTTACAACGATTGGTGTTTTTTTGt                                                                      <  1:450461‑M1/80‑1 (MQ=255)
                                                                             gTTTTGTTATCCCGGAACGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTg                                                                                                                      >  6:421330/1‑101 (MQ=255)
                                                                              ttttGTTATCCCGGAACGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGtt                                                                     >  6:165989/1‑149 (MQ=255)
                                                                                    tATCCCGGAACGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCAt                                                                <  6:60078/148‑1 (MQ=255)
                                                                                     aTCCCGGAACGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCAAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGa                                                              >  4:81984/1‑149 (MQ=255)
                                                                                        gaacaaaaaatcaccaatcgttgtaaaatctaacgcccgtattttgactgcaaagaaaATAAGCCAG‑‑TCGATGCTGGCTTATTTTc                                                                                                                          <  1:100026‑M1/28‑1 (MQ=255)
                                                                                        gaacaaaaaatcaccaatcgttgtaaaatctaacgcccgtattttgactgcaaagaaaATAAGCCAG‑‑TCGATGCTGGCTTATTTTc                                                                                                                          >  2:100026‑M1/59‑86 (MQ=255)
                                                                                        ccGGAACGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCaaaa                                                                                                             <  5:226537/99‑1 (MQ=255)
                                                                                        ccGGAACGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCaaaa                                                                                                             >  6:226537/1‑99 (MQ=255)
                                                                                         cGGAACGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCttt                                                                                                                       <  7:193765/88‑1 (MQ=255)
                                                                                         cGGAACGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCttt                                                                                                                       >  8:193765/1‑88 (MQ=255)
                                                                                          ggAACGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGCGATTTTTTGTTCGCATGATTAGc                                                         <  1:182753/149‑1 (MQ=255)
                                                                                             aCGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCAt                                                      <  7:184699/149‑1 (MQ=255)
                                                                                                tttAATTGACAAATACAGCGATTAATCCGCCTGTGTCATCTATTAATGCCATAAGCCAT‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCCTTAGATTTTACAACGATAGGTGATTTTTTGTTCGAATGATTAGCCATGTc                                                   >  4:403010/1‑149 (MQ=255)
                                                                                                 ttAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCt                                                  >  5:412352/1‑149 (MQ=255)
                                                                                                    aTTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCtttt                                               >  5:169055/1‑149 (MQ=255)
                                                                                                    aTTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCttt                                                <  2:164924/148‑1 (MQ=255)
                                                                                                     ttGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTAGCATGATTAGCCATGTCtttt                                               >  8:190514/1‑148 (MQ=255)
                                                                                                        ccAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCa                                            <  4:302736/148‑1 (MQ=255)
                                                                                                         cAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACg                                          >  8:73360/1‑149 (MQ=255)
                                                                                                         cAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACg                                          >  3:252583/1‑149 (MQ=255)
                                                                                                         cAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCACATGATTAGCCATGTCTTTTTCAc                                           <  2:296789/148‑1 (MQ=255)
                                                                                                             tgtaaaatctaacgcccgtattttgactgcaaagaaaATAAGCCAG‑‑CATCGACTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGaaa                                      >  7:110310‑M1/38‑149 (MQ=255)
                                                                                                               taaaatctaacgcccgtattttgactgcaaagaaaATAAGCCAG‑‑CATCGACTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGaaa                                      <  8:110310‑M1/112‑1 (MQ=255)
                                                                                                                 gagATTAATCCGACTTTGTCATATTTTATTGCCATAAGCCAT‑‑TCGATGCTGGCTTATTTTCTTTGCATTAAAAATACGGGAGTTAGATTTTACAACGATTGGTGATTTTTTGTTCTCATGATTAGCCATGTCTTTTTCACGGAAATatt                                  <  3:99676/147‑3 (MQ=255)
                                                                                                                  cGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGAtt                                                                            >  6:353368/1‑106 (MQ=255)
                                                                                                                   gATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAgtg                                 <  3:81984/148‑1 (MQ=255)
                                                                                                                       aaTCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAGTGtttt                             <  5:60705/148‑1 (MQ=255)
                                                                                                                        aTCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTg                                                                       <  8:387171/105‑1 (MQ=255)
                                                                                                                        aTCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTg                                                                       >  7:387171/1‑105 (MQ=255)
                                                                                                                         tCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAGTGTTTtata                          <  7:76946/149‑1 (MQ=255)
                                                                                                                         tCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAGTGTTTtata                          >  4:252521/1‑149 (MQ=255)
                                                                                                                            gCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGc                                                         <  4:148601/115‑1 (MQ=255)
                                                                                                                            gCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAGTGTTTTATACtg                       >  7:253915/1‑149 (MQ=255)
                                                                                                                             ccTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAgtg                                 <  8:264319/138‑1 (MQ=255)
                                                                                                                              cTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAGTGTTTTATACtggt                     >  4:80355/1‑149 (MQ=255)
                                                                                                                                     aTCTTTTATTCCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTTTTCGCATGAATAGCCATGTCATTTTAACGGAAATAGTGTTTTATACTGGTAGGTGAt              >  8:305922/1‑149 (MQ=255)
                                                                                                                                      tCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCttt                                                >  7:288665/1‑114 (MQ=255)
                                                                                                                                      tCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGAATTTTTGTTCGCATGATTAGCCATGTCTTTTTCACTGAAATAGTGTTTTATAGTGGTTGGTGAtt             >  2:35810/1‑149 (MQ=255)
                                                                                                                                          ttATTGCCATAAGCCAG‑‑TCTATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAGTGTTTTATACTGGTTGGTGAttt            <  1:22635/146‑1 (MQ=255)
                                                                                                                                          ttATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAGTGTTTTATACTGGTTGGTGAttt            <  6:169055/146‑1 (MQ=255)
                                                                                                                                            aTTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAGTGTTTTATACtggt                     >  2:200635/1‑135 (MQ=255)
                                                                                                                                            aTTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAGTGTTTTATACtggt                     <  1:200635/135‑1 (MQ=255)
                                                                                                                                               gCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAg                                   <  8:75717/118‑1 (MQ=255)
                                                                                                                                               gCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAg                                   >  7:75717/1‑118 (MQ=255)
                                                                                                                                                ccATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCTTTAGATTTTACAACGATTGGTGATTTTTTGATCGAATGATTAGCCATCTCTTTTTAACGGAAATAGAGTTTTAAACAGGTTGGTGAATTCTTATCGc    >  6:83500/1‑148 (MQ=255)
                                                                                                                                                ccATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAGTGTTTTATACTGGTTGGTGATTTCTTATCg     <  8:28219/147‑1 (MQ=255)
                                                                                                                                                ccATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAGTGTTTTATACTGGTTGGTGATTTCTTATCg     >  7:28219/1‑147 (MQ=255)
                                                                                                                                                ccATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAGTGTTTTATACTGGTTGGTGATTTCTTATCGc    >  7:145144/1‑148 (MQ=255)
                                                                                                                                                 cATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAGTGTTTTATACTGGTTGGTGCTTTCTTATCGCta  <  3:80355/149‑1 (MQ=255)
                                                                                                                                                 cATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGAGTTTACAACGATGGGTGAGTTTTTGTTCGCATGATTAGGCATGGCTTTTTCACGGAAATAGTGTTTTATACTGGTTGGTGATTTCTTATAGCta  >  4:262442/1‑149 (MQ=255)
                                                                                                                                                  ATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAGTGTTTTATACTGGTTGGTGATTTCTTATCGCta  <  2:398102‑M1/148‑1 (MQ=255)
                                                                                                                                                  ATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAGTGTTTTATACTGGTTGGTGATTTCTTATCGCta  <  5:55354‑M1/148‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                                     
GATCGTGAAACATGCTGTGAATCATCACGAAAGTCGCCTGAATATTGAGAGTACAGTAGGAAAAGGAACACGTTTCAGTTTTGTTATCCCGGAACGTTTAATTGCCAAAAACAGCGATTAATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAG‑‑TCGATGCTGGCTTATTTTCTTTGCAGTCAAAATACGGGCGTTAGATTTTACAACGATTGGTGATTTTTTGTTCGCATGATTAGCCATGTCTTTTTCACGGAAATAGTGTTTTATACTGGTTGGTGATTTCTTATCGCTA  >  NC_000913/419064‑419357

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.