Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
1 1 1
2 1 1
3 1 1
4 1 1
5 1 1
6 1 1
7 1 1
8 1 1
9 1 1
10 1 1
11 1 1
12 1 1
13 1 1
14 1 1
15 1 1
16 1 1
17 1 1
18 1 1
19 1 1
20 1 1
21 1 1
22 1 1
23 1 1
24 1 1
25 1 1
26 1 1
27 1 1
28 1 1
29 1 1
30 1 1
31 1 1
32 1 1
33 1 1
34 1 1
35 1 1
36 1 1
37 1 1
38 1 1
39 1 1
40 1 1
41 1 1
42 1 1
43 1 1
44 1 1
45 1 1
46 1 1
46 46 46

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 79 169
Multiple Base Substitutions 0 0
Deletions 17 153
Insertions 6 141
Mobile Element Insertions 16 61
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 118 524

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F60 I1 R1 10 0 115.7 3938298 99.1% 3902853 139.7
A2 F60 I1 R1 13 0 91.8 3136706 99.4% 3117885 139.7
A3 F60 I1 R1 9 0 94.2 3267576 99.3% 3244702 139.7
A4 F60 I1 R1 10 0 83.4 2841042 98.7% 2804108 139.8
A5 F60 I1 R1 14 0 101.6 3468360 98.9% 3430208 139.8
A6 F60 I1 R1 11 0 92.4 3150178 98.8% 3112375 139.9
A7 F60 I1 R1 12 0 151.3 5185766 98.9% 5128722 139.8
A8 F60 I1 R1 13 0 156.7 5387192 99.4% 5354868 139.8
A9 F60 I1 R1 12 0 56.3 1908544 99.3% 1895184 139.8
A10 F60 I1 R1 10 0 75.5 2548902 99.4% 2533608 139.7
A11 F60 I1 R1 11 0 83.2 2796804 99.4% 2780023 139.7
A12 F60 I1 R1 10 0 68.6 2346920 99.1% 2325797 139.7
A13 F60 I1 R1 10 0 67.2 2306832 99.3% 2290684 139.7
A14 F60 I1 R1 11 0 63.9 2153418 99.3% 2138344 139.6
A15 F60 I1 R1 13 0 89.5 3018190 98.6% 2975935 139.6
A16 F60 I1 R1 14 0 104.3 3578786 99.2% 3550155 139.7
A17 F60 I1 R1 10 0 97.2 3283030 98.9% 3246916 139.7
A18 F60 I1 R1 12 0 125.7 4217070 98.9% 4170682 139.7
A19 F60 I1 R1 9 0 132.9 4472138 99.3% 4440833 139.7
A20 F60 I1 R1 10 0 70.6 2389780 99.1% 2368271 139.7
A21 F60 I1 R1 11 0 116.6 3946732 99.1% 3911211 139.7
A22 F60 I1 R1 15 0 98.9 3343270 99.3% 3319867 139.7
A23 F60 I1 R1 13 0 146.1 4914750 99.0% 4865602 139.7
A24 F60 I1 R1 11 0 139.2 4733534 98.9% 4681465 139.8
A25 F60 I1 R1 10 0 84.2 2855252 99.4% 2838120 139.8
A26 F60 I1 R1 11 0 107.6 3631828 99.1% 3599141 139.8
A27 F60 I1 R1 9 0 135.4 4571588 99.3% 4539586 139.8
A28 F60 I1 R1 11 0 64.6 2186178 98.8% 2159943 139.8
A29 F60 I1 R1 11 0 121.0 4111496 98.9% 4066269 139.9
A30 F60 I1 R1 10 0 43.1 1453344 99.0% 1438810 139.9
A31 F60 I1 R1 12 0 72.5 2467260 98.8% 2437652 139.9
A32 F60 I1 R1 10 0 73.1 2489748 99.4% 2474809 139.9
A33 F60 I1 R1 11 0 96.2 3279560 99.2% 3253323 139.7
A34 F60 I1 R1 11 0 140.5 4770272 99.3% 4736880 139.7
A35 F60 I1 R1 9 0 92.7 3131692 99.0% 3100375 139.7
A36 F60 I1 R1 12 0 136.2 4581582 98.8% 4526603 139.8
A37 F60 I1 R1 11 0 134.4 4525100 98.8% 4470798 139.8
A38 F60 I1 R1 17 0 120.6 4079220 98.9% 4034348 139.9
A39 F60 I1 R1 12 0 114.3 3845220 99.0% 3806767 139.8
A40 F60 I1 R1 9 0 75.3 2542052 99.0% 2516631 139.9
A41 F60 I1 R1 11 0 88.5 2972794 99.0% 2943066 139.9
A42 F60 I1 R1 15 0 25.4 857350 99.2% 850491 139.9
A43 F60 I1 R1 14 0 61.8 2083732 98.8% 2058727 139.9
A44 F60 I1 R1 12 0 64.5 2163972 98.9% 2140168 139.9
A45 F60 I1 R1 13 0 74.4 2516240 99.0% 2491077 139.8
A46 F60 I1 R1 9 0 91.7 3130126 98.8% 3092564 139.9

Mutation Needle Plot

Mutation Targets

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