Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
13 4 5
14 3 4
15 4 5
16 4 5
4 15 19

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 289 452
Multiple Base Substitutions 1 17
Deletions 16 27
Insertions 18 36
Mobile Element Insertions 0 0
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 324 532

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A13 F28 I1 R1 5 0 17.4 821206 93.4% 767006 139.7
A13 F49 I1 R1 8 0 31.9 1599366 92.4% 1477814 133.9
A13 F69 I1 R1 6 0 37.1 1810740 92.4% 1673123 136.9
A13 F83 I0 R1 470 0 25.4 1233660 92.7% 1143602 136.1
A13 F83 I3 R1 8 0 111.3 5614604 92.7% 5204737 132.8
A14 F27 I1 R1 6 0 50.0 2518328 92.1% 2319380 134.1
A14 F65 I1 R1 7 0 48.1 2399244 92.7% 2224099 134.6
A14 F82 I0 R1 369 0 25.5 1223190 93.1% 1138789 137.7
A14 F82 I4 R1 11 0 25.7 1246738 92.8% 1156972 137.1
A15 F28 I1 R1 7 0 56.1 2956700 92.0% 2720164 129.1
A15 F49 I1 R1 7 0 58.2 2964606 91.5% 2712614 133.6
A15 F68 I1 R1 6 0 70.9 3492122 93.1% 3251165 135.0
A15 F84 I0 R1 1813 0 100.6 4907612 94.1% 4618062 136.3
A15 F84 I5 R1 9 0 35.5 1731978 92.9% 1609007 137.2
A16 F29 I1 R1 7 0 13.3 632202 93.2% 589212 138.1
A16 F48 I1 R1 0 0 44.0 2204076 93.1% 2051994 133.4
A16 F67 I1 R1 6 0 26.7 1286810 92.9% 1195446 138.0
A16 F86 I0 R1 844 0 47.3 2263464 93.4% 2114075 137.9
A16 F86 I5 R1 8 0 50.1 2526992 92.3% 2332413 133.2

Mutation Needle Plot

Mutation Targets

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