Notes

Publication:

10.1128/AEM.02736-16

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
0 1 1
1 1 1
2 1 1
3 1 2
4 1 1
7 1 1
8 1 2
12 1 1
13 1 2
20 1 1
21 1 2
22 1 1
23 1 1
13 13 17

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 63 342
Multiple Base Substitutions 1 3
Deletions 23 221
Insertions 9 33
Mobile Element Insertions 0 0
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 96 599

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 27 0 151.6 2839642 96.9% 2751613 249.1
A1 F2000 I1 R1 36 0 101.0 1872230 98.0% 1834785 249.5
A2 F2000 I1 R1 33 0 228.2 4210074 98.0% 4125872 249.5
A3 F2000 I1 R1 31 0 139.6 2602876 97.6% 2540406 248.9
A3 F2000 I2 R1 32 0 157.8 2944496 97.3% 2864994 248.8
A4 F2000 I1 R1 34 0 121.5 2247958 97.8% 2198502 249.5
A7 F2000 I1 R1 34 0 120.6 2240694 97.9% 2193639 249.5
A8 F2000 I1 R1 30 0 146.7 2742910 97.3% 2668851 249.1
A8 F2000 I2 R1 34 0 114.9 2138514 97.7% 2089328 249.4
A12 F2000 I1 R1 34 0 110.7 2062882 97.7% 2015435 249.6
A13 F2000 I1 R1 32 0 218.7 4110386 96.5% 3966522 248.9
A13 F2000 I2 R1 33 0 139.1 2606162 97.1% 2530583 249.1
A20 F2000 I1 R1 46 0 132.3 2481574 98.0% 2431942 249.3
A21 F2000 I1 R1 33 0 158.2 2945286 97.8% 2880489 248.9
A21 F2000 I2 R1 42 0 197.7 3692436 97.3% 3592740 248.6
A22 F2000 I1 R1 44 0 119.8 2220582 97.9% 2173949 249.4
A23 F2000 I1 R1 44 0 117.2 2191076 97.5% 2136299 249.4

Mutation Needle Plot

Mutation Targets

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