Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
1 1 1
2 1 1
3 1 1
4 1 1
5 1 1
6 1 1
7 1 1
8 1 1
9 1 1
10 1 1
11 1 1
12 1 1
12 12 12

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 1183 1352
Multiple Base Substitutions 1 1
Deletions 125 214
Insertions 152 223
Mobile Element Insertions 4 15
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 1465 1805

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F28 I1 R1 112 0 94.0 3211786 99.3% 3189303 138.8
A2 F28 I1 R1 151 0 83.1 2798978 99.4% 2782184 139.1
A3 F28 I1 R1 146 0 75.3 2562504 98.6% 2526628 139.0
A4 F28 I1 R1 128 0 54.7 1845674 99.3% 1832754 139.4
A5 F28 I1 R1 162 0 86.7 2935410 99.3% 2914862 138.3
A6 F28 I1 R1 153 0 60.1 2040486 99.3% 2026202 138.5
A7 F28 I1 R1 172 0 67.8 2301510 98.9% 2276193 138.4
A8 F28 I1 R1 182 0 57.1 1926220 99.1% 1908884 138.4
A9 F28 I1 R1 138 0 91.1 3071990 99.2% 3047414 138.5
A10 F28 I1 R1 116 0 72.9 2471836 99.3% 2454533 138.7
A11 F28 I1 R1 224 0 87.5 2960670 99.3% 2939945 138.5
A12 F28 I1 R1 121 0 68.4 2351762 99.3% 2335299 138.6

Mutation Needle Plot

Mutation Targets

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