mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 11,741 | T→C | M16V (ATG→GTG) | yaaI ← | DUF2541 domain‑containing protein YaaI |
| RA | 37,682 | T→C | N48S (AAC→AGC) | caiC ← | carnitine‑CoA ligase |
| RA | 52,315 | T→G | Q39P (CAG→CCG) | rsmA ← | 16S rRNA m(6)2A1518,m(6)2A1519 dimethyltransferase |
| RA | 77,011 | C→T | V97I (GTT→ATT) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 77,593 | (T)8→7 | noncoding (227/227 nt) | sgrS → | small regulatory RNA SgrS |
| RA | 144,096 | Δ2 bp | coding (395‑396/771 nt) | yadH → | putative ABC transporter membrane subunit YadH |
| RA | 147,572 | A→G | Y202C (TAC→TGC) | rpnC → | recombination‑promoting nuclease RpnC |
| RA | 150,470 | A→G | S162P (TCC→CCC) | yadC ← | fimbrial tip‑adhesin YadC |
| RA | 175,956 | C→T | H284Y (CAC→TAC) | clcA → | chloride:H(+) antiporter ClcA |
| RA | 209,624 | (T)6→5 | intergenic (+44/‑55) | accA → / → ldcC | acetyl‑CoA carboxyltransferase subunit alpha/lysine decarboxylase 2 |
| RA | 241,310 | T→C | N665S (AAC→AGC) | fadE ← | acyl‑CoA dehydrogenase |
| RA | 255,174 | (C)6→7 | coding (543/1458 nt) | pepD ← | peptidase D |
| RA | 255,984 | A→G | E3G (GAA→GGA) | gpt → | xanthine‑guanine phsophoribosyltransferase |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 268,395 | A→G | V189A (GTC→GCC) | ykfA ← | CP4‑6 prophage; putative GTP‑binding protein YkfA |
| RA | 301,581 | A→G | L103L (TTA→CTA) | paoB ← | aldehyde dehydrogenase, FAD‑binding subunit |
| RA | 308,054 | (C)7→8 | coding (1279/2526 nt) | ecpC ← | putative fimbrial usher protein EcpC |
| RA | 319,878 | T→C | T42A (ACC→GCC) | rclA ← | putative pyridine nucleotide‑disulfide oxidoreductase RclA |
| RA | 380,022 | (G)10→9 | intergenic (‑141/+47) | frmR ← / ← yaiO | DNA‑binding transcriptional repressor FrmR/outer membrane protein YaiO |
| RA | 429,137 | G→A | L497L (TTG→TTA) | secD → | Sec translocon accessory complex subunit SecD |
| RA | 527,577 | T→C | intergenic (+36/‑4) | rhsD → / → ybbC | protein RhsD/PF15631 family protein YbbC |
| RA | 533,863 | (T)7→6 | intergenic (+37/‑53) | allR → / → gcl | DNA‑binding transcriptional repressor AllR/glyoxylate carboligase |
| RA | 548,727 | A→G | Y124C (TAC→TGC) | ylbE → | DUF1116 domain‑containing protein YlbE |
| RA | 566,528 | A→G | intergenic (‑167/‑156) | exoD ← / → renD | DLP12 prophage; putative exonuclease ExoD/DLP12 prophage; protein RenD |
| RA | 570,520 | T→C | intergenic (+92/‑373) | ybcK → / → ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL |
| RA | 727,514 | (T)7→6 | coding (1219/1674 nt) | kdpA ← | K(+) transporting P‑type ATPase subunit KdpA |
| RA | 817,449 | A→G | T136A (ACC→GCC) | moaA → | GTP 3',8'‑cyclase |
| RA | 844,562 | T→G | T307P (ACC→CCC) | ybiO ← | moderate conductance mechanosensitive channel |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| RA | 932,340 | (A)8→7 | intergenic (‑290/‑255) | trxB ← / → lrp | thioredoxin reductase/DNA‑binding transcriptional dual regulator Lrp |
| RA | 1,009,887 | (A)6→7 | coding (2044/2109 nt) | rlmL → | fused 23S rRNA m(2)G2445 methyltransferase and 23S rRNA m(7)G2069 methyltransferase |
| RA | 1,010,898 | C→T | A312V (GCC→GTC) | uup → | ATP‑binding protein with possible role in replication |
| RA | 1,018,976 | (A)8→9 | intergenic (+39/+37) | matP → / ← ompA | macrodomain Ter protein/outer membrane porin A |
| RA | 1,103,745 | (T)7→8 | intergenic (‑549/‑206) | csgD ← / → csgB | DNA‑binding transcriptional dual regulator CsgD/curlin, minor subunit |
| RA | 1,143,140 | T→C | T410A (ACT→GCT) | rne ← | ribonuclease E |
| RA | 1,180,225 | A→G | T236A (ACC→GCC) | cobB → | protein‑lysine deacetylase/desuccinylase |
| RA | 1,219,192 | T→C | D70D (GAT→GAC) | ymgF → | inner membrane protein that interacts with cell division proteins |
| RA | 1,220,971 | G→A | pseudogene (1371/2648 nt) | ycgH → | putative transporter component, N‑terminal fragment |
| RA | 1,223,984 | (A)7→6 | intergenic (+77/+295) | ycgI → / ← minE | protein YcgI/Z‑ring positioning protein MinE |
| RA | 1,224,024 | A→G | intergenic (+117/+255) | ycgI → / ← minE | protein YcgI/Z‑ring positioning protein MinE |
| RA | 1,243,818 | (T)5→4 | coding (710/735 nt) | ycgR ← | flagellar brake protein YcgR |
| RA | 1,249,084 | T→C | S11G (AGC→GGC) | dhaM ← | dihydroxyacetone kinase subunit M |
| RA | 1,362,294 | T→C | G128G (GGT→GGC) | puuR → | DNA‑binding transcriptional repressor PuuR |
| RA | 1,368,615 | A→G | E179E (GAA→GAG) | pspA → | phage shock protein A |
| RA | 1,541,351 | C→T | E414K (GAA→AAA) | narZ ← | nitrate reductase Z subunit alpha |
| RA | 1,572,854 | A→G | A783A (GCT→GCC) | pqqL ← | putative zinc peptidase |
| RA | 1,594,132 | (C)8→7 | pseudogene (3955/5422 nt) | yneO ← | AIDA‑I family autotransporter YneO |
| RA | 1,632,949 | C→T | A20A (GCC→GCT) | ynfT → | Qin prophage; protein YnfT |
| RA | 1,634,642 | C→T | G82S (GGC→AGC) | tfaQ ← | Qin prophage; putative tail fiber assembly protein TfaQ |
| RA | 1,646,951 | A→G | intergenic (+214/+223) | flxA → / ← ydfW | Qin prophage; protein FlxA/Qin prophage; uncharacterized protein YdfW |
| RA | 1,685,542 | (C)6→5 | coding (1047/1404 nt) | fumC ← | fumarase C |
| RA | 1,698,891 | (A)7→8 | coding (290/1029 nt) | malI ← | DNA‑binding transcriptional repressor MalI |
| RA | 1,701,088 | (C)5→4 | coding (132/1173 nt) | malY → | negative regulator of MalT activity/cystathionine beta‑lyase |
| RA | 1,724,478 | (G)6→8 | coding (178/522 nt) | sodC ← | superoxide dismutase (Cu‑Zn) |
| RA | 1,726,120 | A→G | E33G (GAA→GGA) | nemR → | DNA‑binding transcriptional repressor NemR |
| RA | 1,776,534 | C→T | G316G (GGC→GGT) | ydiF → | putative acetate‑CoA transferase |
| RA | 1,777,381 | T→C | G62G (GGT→GGC) | ydiO → | putative acyl‑CoA dehydrogenase |
| RA | 1,781,767 | T→C | F125L (TTT→CTT) | ydiS → | putative oxidoreductase with FAD/NAD(P)‑binding domain |
| RA | 1,787,398 | (T)5→4 | intergenic (‑286/‑47) | ppsA ← / → ppsR | phosphoenolpyruvate synthetase/posphoenolpyruvate synthetase regulatory protein |
| RA | 1,873,384 | A→G | K448K (AAA→AAG) | dgcJ → | putative diguanylate cyclase DgcJ |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| RA | 1,949,479 | A→C | G348G (GGT→GGG) | aspS ← | aspartate‑‑tRNA ligase |
| RA | 1,951,452 | A→G | T20A (ACC→GCC) | yecE → | DUF72 domain‑containing protein YecE |
| RA | 1,973,522 | A→G | G601G (GGT→GGC) | cheA ← | chemotaxis protein CheA |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,037,239 | A→G | V305A (GTG→GCG) | hprS ← | sensory histidine kinase HprS |
| RA | 2,135,135 | (C)5→4 | coding (518/2163 nt) | wzc ← | protein‑tyrosine kinase Wzc |
| RA | 2,135,776 | T→C | D108G (GAT→GGT) | wzb ← | protein‑tyrosine phosphatase |
| RA | 2,142,983 | A→G | intergenic (‑35/‑283) | udk ← / → dgcE | uridine/cytidine kinase/putative diguanylate cyclase DgcE |
| RA | 2,153,470 | T→C | intergenic (+16/‑176) | sibA → / → sibB | small RNA SibA/small RNA SibB |
| RA | 2,167,184 | A→G | noncoding (71/87 nt) | cyaR → | small regulatory RNA CyaR |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,253,976 | (T)5→4 | coding (170/1251 nt) | nupX ← | putative nucleoside transporter |
| RA | 2,264,383 | T→C | V174A (GTA→GCA) | setB → | sugar exporter SetB |
| RA | 2,276,396 | G→A | E33K (GAG→AAG) | yejF → | putative oligopeptide ABC transporter ATP binding subunit |
| RA | 2,356,477 | G→A | G319G (GGG→GGA) | glpC → | anaerobic glycerol‑3‑phosphate dehydrogenase subunit C |
| RA | 2,390,123 | T→C | A461A (GCA→GCG) | nuoN ← | NADH:quinone oxidoreductase subunit N |
| RA | 2,394,435 | T→C | A204A (GCA→GCG) | nuoL ← | NADH:quinone oxidoreductase subunit L |
| RA | 2,397,887 | T→C | N760S (AAC→AGC) | nuoG ← | NADH:quinone oxidoreductase subunit G |
| RA | 2,408,087 | A→C | N176T (AAC→ACC) | alaA → | glutamate‑‑pyruvate aminotransferase AlaA |
| RA | 2,413,200 | T→C | intergenic (‑68/‑270) | yfbV ← / → ackA | UPF0208 membrane protein YfbV/acetate kinase |
| RA | 2,446,579 | T→C | T299A (ACC→GCC) | aroC ← | chorismate synthase |
| RA | 2,527,823 | T→C | V293A (GTG→GCG) | yfeH → | putative solute:Na(+) symporter |
| RA | 2,531,596 | (G)6→5 | coding (134/762 nt) | cysZ → | sulfate:H(+) symporter |
| RA | 2,554,925 | A→G | R86R (CGT→CGC) | eutR ← | putative AraC‑type transcriptional regulator EutR |
| RA | 2,588,160 | A→C | D189A (GAC→GCC) | acrD → | multidrug efflux pump RND permease AcrD |
| RA | 2,631,977 | T→C | T187A (ACC→GCC) | guaA ← | GMP synthetase |
| RA | 2,638,026 | (C)6→7 | coding (627/1179 nt) | bamB ← | outer membrane protein assembly factor BamB |
| RA | 2,712,729 | T→C | G12G (GGA→GGG) | yfiC ← | tRNA m(6)A37 methyltransferase |
| RA | 2,764,549 | T→C | D202G (GAC→GGC) | abpA ← | CP4‑57 prophage; anti‑bacteriophage protein |
| RA | 2,765,794 | (C)7→6 | intergenic (‑18/‑124) | yfjM ← / → rnlA | CP4‑57 prophage; protein YfjM/CP4‑57 prophage; RNase LS, toxin of the RnlAB toxin‑antitoxin system |
| RA | 2,789,174 | C→T | R64C (CGT→TGT) | csiD → | PF08943 family protein CsiD |
| RA | 2,797,768 | (C)5→4 | coding (249/525 nt) | ygaP → | thiosulfate sulfurtransferase YgaP |
| RA | 2,811,134 | A→G | H122R (CAC→CGC) | mprA → | DNA‑binding transcriptional repressor MprA |
| RA | 2,838,312 | G→A | P318L (CCG→CTG) | ascG ← | DNA‑binding transcriptional repressor AscG |
| RA | 2,840,934 | T→C | Y471H (TAT→CAT) | ascF → | beta‑glucoside specific PTS enzyme IIBC component |
| MC JC | 2,857,096 | Δ2,538 bp | coding (4‑2541/2562 nt) | mutS → | DNA mismatch repair protein MutS |
| RA | 2,873,680 | T→C | T105A (ACC→GCC) | cysC ← | adenylyl‑sulfate kinase |
| RA | 2,874,529 | A→G | G297G (GGT→GGC) | cysN ← | sulfate adenylyltransferase subunit 1 |
| RA | 2,949,993 | (T)5→6 | coding (752/1332 nt) | argA → | N‑acetylglutamate synthase |
| RA | 2,955,097 | C→T | E303K (GAA→AAA) | recB ← | exodeoxyribonuclease V subunit RecB |
| RA | 2,963,922 | T→C | T86A (ACC→GCC) | ppdA ← | conserved protein PpdA |
| RA | 2,966,682 | A→G | Y585H (TAC→CAC) | ptsP ← | phosphoenolpyruvate‑protein phosphotransferase PtsP |
| RA | 2,968,519 | A→G | S153S (AGT→AGC) | rppH ← | RNA pyrophosphohydrolase |
| RA | 2,999,175 | T→C | L239L (CTA→CTG) | ygeR ← | LysM domain‑containing putative peptidase lipoprotein YgeR |
| RA | 3,017,330 | T→C | L424P (CTG→CCG) | ygfK → | putative oxidoreductase, Fe‑S subunit |
| RA | 3,024,683 | T→C | G111G (GGT→GGC) | xanQ → | xanthine:H(+) symporter XanQ |
| RA | 3,034,250 | T→C | T309A (ACG→GCG) | lysS ← | lysine‑‑tRNA ligase, constitutive |
| RA | 3,060,597 | T→C | V282A (GTC→GCC) | argP → | DNA‑binding transcriptional dual regulator ArgP |
| RA | 3,061,160 | T→C | V104A (GTT→GCT) | scpA → | methylmalonyl‑CoA mutase |
| RA | 3,061,966 | Δ1 bp | coding (1117/2145 nt) | scpA → | methylmalonyl‑CoA mutase |
| RA | 3,068,157 | T→C | intergenic (‑77/+16) | yggE ← / ← argO | uncharacterized protein YggE/L‑arginine exporter |
| RA | 3,101,039 | (C)7→6 | coding (585/720 nt) | yggN ← | putative EcfF |
| RA | 3,110,921 | G→A | T69I (ACA→ATA) | yghD ← | putative type II secretion system M‑type protein |
| RA | 3,123,278 | T→C | E176E (GAA→GAG) | glcB ← | malate synthase G |
| RA | 3,137,202 | T→C | T441A (ACC→GCC) | gss ← | fused glutathionylspermidine amidase/glutathionylspermidine synthetase |
| RA | 3,165,556 | T→C | T140A (ACG→GCG) | parC ← | DNA topoisomerase IV subunit A |
| RA | 3,222,167 | T→C | Y234Y (TAT→TAC) | ebgR → | DNA‑binding transcriptional repressor EbgR |
| RA | 3,280,758 | C→T | pseudogene (58/402 nt) | agaW → | N‑acetyl‑D‑galactosamine specific PTS truncated enzyme IIC component |
| RA | 3,283,203 | C→T | P21S (CCT→TCT) | kbaY → | tagatose‑1,6‑bisphosphate aldolase 1 subunit KbaY |
| RA | 3,303,065 | T→C | C193R (TGT→CGT) | yhbV → | putative peptidase YhbV |
| RA | 3,303,947 | T→C | V167A (GTG→GCG) | yhbW → | putative luciferase‑like monooxygenase |
| RA | 3,333,582 | (A)8→7 | intergenic (‑131/‑128) | rplU ← / → ispB | 50S ribosomal subunit protein L21/all‑trans‑octaprenyl‑diphosphate synthase |
| RA | 3,342,809 | A→G | K179K (AAA→AAG) | kdsC → | 3‑deoxy‑D‑manno‑octulosonate 8‑phosphate phosphatase KdsC |
| RA | 3,352,439 | A→G | V196A (GTT→GCT) | arcB ← | sensory histidine kinase ArcB |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,368,837 | T→C | G337G (GGT→GGC) | yhcG → | DUF1016 domain‑containing protein YhcG |
| RA | 3,376,330 | T→C | E149E (GAA→GAG) | sspB ← | ClpXP protease specificity‑enhancing factor |
| RA | 3,377,627 | (A)5→4 | intergenic (‑207/+188) | sspA ← / ← rpsI | stringent starvation protein A/30S ribosomal subunit protein S9 |
| RA | 3,388,726 | A→G | V134A (GTT→GCT) | aaeA ← | aromatic carboxylic acid efflux pump membrane fusion protein |
| RA | 3,479,997 | A→G | V204A (GTA→GCA) | kefB ← | K(+) : H(+) antiporter KefB |
| RA | 3,555,953 | T→C | E299E (GAA→GAG) | rtcA ← | RNA 3'‑terminal phosphate cyclase |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,561,301 | T→C | E51G (GAG→GGG) | glpG ← | rhomboid protease |
| RA | 3,566,281 | C→T | A101T (GCA→ACA) | glgP ← | glycogen phosphorylase |
| RA | 3,580,766 | T→C | T14A (ACC→GCC) | yhhX ← | putative oxidoreductase YhhX |
| JC JC | 3,769,841 | IS5 (+) +4 bp | intergenic (+161/+399) | yibV → / ← yibH | PF15596 family protein YibV/inner membrane protein YibH |
| RA | 3,781,150 | T→C | intergenic (+133/‑65) | lldD → / → trmL | L‑lactate dehydrogenase/tRNA (cytidine/uridine‑2'‑O)‑ribose methyltransferase |
| RA | 3,797,041 | (T)8→9 | coding (94/1260 nt) | waaL → | O‑antigen ligase |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 3,860,630 | (C)5→4 | coding (348/894 nt) | yidL → | putative DNA‑binding transcriptional regulator YidL |
| RA | 3,879,860 | C→T | G87D (GGC→GAC) | gyrB ← | DNA gyrase subunit B |
| RA | 3,915,508 | (A)8→9 | intergenic (‑308/+45) | glmU ← / ← atpC | fused N‑acetylglucosamine‑1‑phosphate uridyltransferase and glucosamine‑1‑phosphate acetyltransferase/ATP synthase F1 complex subunit epsilon |
| RA | 3,920,011 | T→C | K131K (AAA→AAG) | atpH ← | ATP synthase F1 complex subunit delta |
| JC JC | 3,923,012 | IS5 (+) +4 bp | intergenic (‑572/+42) | atpI ← / ← rsmG | ATP synthase accessory factor/16S rRNA m(7)G527 methyltransferase |
| RA | 3,970,032 | (G)6→7 | coding (1002/1047 nt) | wzzE → | enterobacterial common antigen polysaccharide co‑polymerase |
| RA | 4,001,454 | A→G | N10S (AAC→AGC) | corA → | Ni(2(+))/Co(2(+))/Mg(2(+)) transporter |
| RA | 4,044,758 | T→C | I187T (ATT→ACT) | yihF → | uncharacterized protein YihF |
| RA | 4,086,581 | T→C | V189A (GTG→GCG) | fdhD → | sulfurtransferase for molybdenum cofactor sulfuration |
| RA | 4,102,693 | A→G | intergenic (+20/‑129) | kdgT → / → yiiM | 2‑dehydro‑3‑deoxy‑D‑gluconate:H(+) symporter/2‑amino‑6‑N‑hydroxylaminopurine resistance protein |
| RA | 4,110,997 | C→T | A171T (GCA→ACA) | tpiA ← | triose‑phosphate isomerase |
| RA | 4,165,046 | A→G | T470A (ACC→GCC) | btuB → | cobalamin/cobinamide outer membrane transporter |
| RA | 4,247,760 | A→G | N326S (AAC→AGC) | malK → | maltose ABC transporter ATP binding subunit |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,307,702 | (T)7→6 | coding (98/930 nt) | alsK ← | D‑allose kinase |
| RA | 4,321,836 | C→T | C196Y (TGC→TAC) | phnF ← | putative transcriptional regulator PhnF |
| RA | 4,323,166 | A→G | pseudogene (116/839 nt) | phnE ← | phosphonate ABC transporter membrane subunit |
| RA | 4,354,227 | T→C | E164G (GAA→GGA) | lysU ← | lysine‑‑tRNA ligase/Ap4A synthetase/Ap3A synthetase |
| RA | 4,367,098 | A→G | G410G (GGT→GGC) | aspA ← | aspartate ammonia‑lyase |
| RA | 4,409,679 | C→T | N135N (AAC→AAT) | rlmB → | 23S rRNA 2'‑O‑ribose G2251 methyltransferase |
| RA | 4,445,549 | A→G | T480A (ACC→GCC) | tamB → | translocation and assembly module subunit TamB |
| RA | 4,488,579 | (C)7→8 | coding (1485/1503 nt) | yjgR ← | DUF853 domain‑containing protein YjgR |
| RA | 4,551,336 | G→A | intergenic (‑40/‑300) | gntP ← / → uxuA | fructuronate transporter/D‑mannonate dehydratase |
| RA | 4,558,205 | A→G | S29P (TCC→CCC) | hypT ← | DNA‑binding transcriptional dual regulator HypT |
| RA | 4,569,452 | A→G | pseudogene (455/921 nt) | rpnD → | truncated recombination‑promoting nuclease‑like protein RpnD |
| RA | 4,577,067 | (C)6→7 | coding (892/1047 nt) | mcrC ← | 5‑methylcytosine‑specific restriction enzyme subunit McrC |
| RA | 4,595,790 | Δ1 bp | coding (62/915 nt) | lgoR ← | putative DNA‑binding transcriptional regulator LgoR |
| RA | 4,605,629 | A→G | V12A (GTC→GCC) | fhuF ← | hydroxamate siderophore iron reductase |
| RA | 4,606,094 | (G)8→7 | noncoding (72/87 nt) | leuV ← | tRNA‑Leu |
| RA | 4,606,106 | (C)5→6 | noncoding (60/87 nt) | leuV ← | tRNA‑Leu |
| RA | 4,609,336 | (C)7→8 | intergenic (+13/‑78) | yjjG → / → prfC | pyrimidine nucleotidase/peptide chain release factor RF3 |
| RA | 4,636,816 | A→G | T41A (ACG→GCG) | creC → | sensory histidine kinase CreC |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 226710–226968 | 228907–228689 | 1722–2198 | 20 [12] | [18] 22 | [rrlH]–rrfH | [rrlH],rrfH |
| * | * | ÷ | NC_000913 | 1633021–1633220 | 1634547–1634098 | 879–1527 | 21 [18] | [16] 19 | ydfK–[tfaQ] | ydfK,pinQ,[tfaQ] |
| * | * | ÷ | NC_000913 | 3423766–3424234 | 3424540–3424240 | 7–775 | 19 [18] | [17] 19 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 86 (1.280) | 24 (0.400) | 22/242 | 1.6 | 25.4% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 65 (1.090) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 66 (1.010) | 48/266 | 0.3 | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 3363001 = | 99 (1.470) | 62 (0.930) | 42/272 | 0.5 | 55.5% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 1 (0.010) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 71 (1.060) | 54/274 | 0.2 | 97.3% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 2 (0.030) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||