Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,377,627	(A)5→4	intergenic (‑207/+188)	sspA ← / ← rpsI	stringent starvation protein A/30S ribosomal subunit protein S9

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,377,623	0	A	.	100.0%	242.5 / NA	58	intergenic (‑203/+192)	sspA/rpsI	stringent starvation protein A/30S ribosomal subunit protein S9
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base . (27/31);  total (27/31)

GTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGACATTTGGGCAGAAAATTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGGAAAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCT  >  NC_000913/3377485‑3377753                                                                                                                                           |                                                                                                                                   gtgtTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGACATTTGGGCAGAAAATTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGGaa                                                                                                                                   <  1:385964/140‑1 (MQ=255)    ttACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGACATTTGGGCAGAAAATTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGGaaaag                                                                                                                                >  1:584688/1‑139 (MQ=255)       cccAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGACATTTGGGCAGAAAATTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGGaaaagaga                                                                                                                             >  2:422377/1‑136 (MQ=255)        ccAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGACATTTGGGCAGAAAATTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGG‑AAAAGAGAt                                                                                                                           <  2:955176/140‑1 (MQ=255)         cAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGACATTTGGGCAGAAAATTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGG‑AAAAGAGATg                                                                                                                          <  2:1140081/140‑1 (MQ=255)         cAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGACATTTGGGCAGAAAATTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGG‑AAAAGAGATg                                                                                                                          <  1:422377/140‑1 (MQ=255)            tAAGGAACGACTCTCTTTGTTCTAAAATCAAACAAAAAATGAGCAATACCCGACATTTGGGCAGAAAATTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGG‑AAAAGAGATgcgc                                                                                                                       >  2:584800/1‑140 (MQ=255)              aGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGACATTTGGGCAGAAAATTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGG‑AAAAGAGATGCGCtt                                                                                                                     <  2:972035/140‑1 (MQ=255)              aGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGACATTTGGGCAGAAAATTGGATGATAGCTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGG‑AAAAGAGATGCGCtt                                                                                                                     <  2:1024423/140‑1 (MQ=255)                 aaCGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGACATTTGGGCAGAAAATTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGG‑AAAAGAGATGCGCTTTAg                                                                                                                  >  1:452097/1‑140 (MQ=255)                 aaCGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGACATTTGGGCAGAAAATTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGG‑AAAAGAGATGCGCTTTAg                                                                                                                  >  2:317625/1‑140 (MQ=255)                 aaCGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGACATTTGGGCAGAAAATTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGG‑AAAAGAGATGCGCTTTAg                                                                                                                  >  1:1126010/1‑140 (MQ=255)                      ctctctTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGACATTTGGGCAGAAAATTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGG‑AAAAGAGATGCGCTTTAGTCTGa                                                                                                             >  1:977579/1‑140 (MQ=255)                      ctctctTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGACATTTGGGCAGAAAATTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGG‑AAAAGAGATGCGCTTTAGTCTGa                                                                                                             >  2:664955/1‑140 (MQ=255)                      ctctctTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGACATTTGGGCAGAAAATTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGG‑AAAAGAGATGCGCTTTAGTCTGa                                                                                                             >  1:678765/1‑140 (MQ=255)                      ctctctTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGACATTTGGGCAGAAAATTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGG‑AAAAGAGATGCGCTTTAGTCTGa                                                                                                             >  2:408051/1‑140 (MQ=255)                       tctctTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGACATTTGGGCAGAAAATTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGG‑AAAAGAGATGCGCTTTAGTCTGaa                                                                                                            <  2:1042297/140‑1 (MQ=255)                                tCGAAAATCAAACAAAAAATGAGCAATACCCGACATTTGGGCAGAAAATTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGG‑AAAAGAGATGCGCTTTAGTCTGAAATAGTTGAc                                                                                                   >  1:1073149/1‑140 (MQ=255)                                tCGAAAATCAAACAAAAAATGAGCAATACCCGACATTTGGGCAGAAAATTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGG‑AAAAGAGATGCGCTTTAGTCTGAAATAGTTGAc                                                                                                   <  1:408051/140‑1 (MQ=255)                                 cGAAAATCAAACAAAAAATGAGCAATACCCGACATTTGGGCAGAAAATTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGG‑AAAAGAGATGCGCTTTAGTCTGAAATAGtt                                                                                                      >  1:1115902/1‑136 (MQ=255)                                 cGAAAATCAAACAAAAAATGAGCAATACCCGACATTTGGGCAGAAAATTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGG‑AAAAGAGATGCGCTTTAGTCTGAAATAGtt                                                                                                      <  2:1115902/136‑1 (MQ=255)                                    aaaTCAAACAAAAAATGAGCAATACCCGACATTTGGGCAGAAAATTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGG‑AAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAg                                                                                               <  2:683426/140‑1 (MQ=255)                                     aaTCAAACAAAAAATGAGCAATACCCGACATTTGGGCAGAAAATTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGG‑AAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGt                                                                                              <  2:650809/140‑1 (MQ=255)                                         aaacaaaAAATGAGCAATACCCGACATTTGGGCAGAAAATTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGG‑AAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCt                                                                                          >  1:447866/1‑140 (MQ=255)                                                   tGAGCAATACCCGACATTTGGGCAGAAAATTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGG‑AAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGAt                                                                                <  1:317625/140‑1 (MQ=255)                                                     aGCAATACCCGACATTTGGGCAGAAAATTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGG‑AAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGAtgt                                                                              >  1:35252/1‑140 (MQ=255)                                                         aTACCCGACATTTGGGCAGAAAATTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGG‑AAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGtt                                                                          <  2:35252/140‑1 (MQ=255)                                                         aTACCCGACATTTGGGCAGAAAATTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGG‑AAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGtt                                                                          <  2:1126010/140‑1 (MQ=255)                                                                 cATTTGGGCAGAAAATTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGG‑AAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGtttt                                                                  <  2:987364/140‑1 (MQ=255)                                                                 cATTTGGGCAGAAAATTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGG‑AAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGtttt                                                                  <  1:584800/140‑1 (MQ=255)                                                                 cATTTGGGCAGAAAATTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGG‑AAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGtt                                                                    <  1:33309/138‑1 (MQ=255)                                                                 cATTTGGGCAGAAAATTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGG‑AAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGtt                                                                    >  2:33309/1‑138 (MQ=255)                                                                    ttGGGCAGAAAATTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGG‑AAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGAtg                                                                               <  2:771941/124‑1 (MQ=255)                                                                    ttGGGCAGAAAATTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGG‑AAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGAtg                                                                               >  1:771941/1‑124 (MQ=255)                                                                    ttGGGCAGAAAATTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGG‑AAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTAcc                                                               <  2:584688/140‑1 (MQ=255)                                                                    ttGGGCAGAAAATTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGG‑AAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTAcc                                                               >  1:701062/1‑140 (MQ=255)                                                                    ttGGGCAGAAAATTGGATGATAGTTTACCAGA‑TTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGG‑AAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACct                                                              >  1:1016668/1‑140 (MQ=255)                                                                      gggCAGAAAATTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGG‑AAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACctg                                                             >  2:509708/1‑140 (MQ=255)                                                                      gggCAGAAAATTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGG‑AAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACctg                                                             <  2:675579/140‑1 (MQ=255)                                                                      gggCAGAAAATTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGG‑AAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACctg                                                             >  1:675579/1‑140 (MQ=255)                                                                       ggCAGAAAATTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGG‑AAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGtt                                                                          >  1:764033/1‑126 (MQ=255)                                                                       ggCAGAAAATTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGG‑AAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGtt                                                                          <  2:764033/126‑1 (MQ=255)                                                                       ggCAGAAAATTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGG‑AAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACctgt                                                            <  1:509708/140‑1 (MQ=255)                                                                            aaaaTTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTTAGTCGATGCCGGAAATGGGG‑AAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTAc                                                                <  2:787391/131‑1 (MQ=255)                                                                            aaaaTTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTTAGTCGATGCCGGAAATGGGG‑AAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTAc                                                                >  1:787391/1‑131 (MQ=255)                                                                            aaaaTTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGG‑AAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCtgtctgtc                                                       >  2:40206/1‑140 (MQ=255)                                                                            aaaaTTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGG‑AAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCtgtctgtc                                                       >  2:414537/1‑140 (MQ=255)                                                                                      gatAGCTTACCAGA‑TTTGCGACCATTGTGGTGAGTCGATGACGGAAATGGGG‑AAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGgcagca                                            <  2:1016668/140‑1 (MQ=255)                                                                                         aGTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGG‑AAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCaaa                                          >  1:168067/1‑140 (MQ=255)                                                                                             tACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGG‑AAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGc                                      >  1:98125/1‑140 (MQ=255)                                                                                             tACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGG‑AAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGc                                      <  2:168067/140‑1 (MQ=255)                                                                                                    ttttGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGG‑AAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTc                               >  2:781742/1‑140 (MQ=255)                                                                                                     tttGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGG‑AAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTcc                              <  2:1073149/140‑1 (MQ=255)                                                                                                       tGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGG‑TCAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAg                            >  2:402510/1‑140 (MQ=255)                                                                                                              aTTGTGGTGAGTCGATGCCGGAAATGGGG‑AAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTAc                     <  2:678765/140‑1 (MQ=255)                                                                                                                     tgAGTCGATGCCGGAAATGGGG‑AAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGAtt              <  1:781742/140‑1 (MQ=255)                                                                                                                       aGTCGATGCCGGAAATGGGG‑AAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCa            >  2:882686/1‑140 (MQ=255)                                                                                                                           gATGCGGGAAAT‑GGGAAAAAG‑GGTTCGCTTTTAGCTGAAATAGTTGGCTTAAGCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGAttt       <  1:193890/140‑1 (MQ=255)                                                                                                                           gATGCCGGAAATGGGG‑AAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGAtt        <  2:153288/140‑1 (MQ=255)                                                                                                                            aTGCCGGAAATGGGG‑AAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGAttt       >  1:308333/1‑140 (MQ=255)                                                                                                                                cGGAAATGGGG‑AAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGc   <  2:701062/140‑1 (MQ=255)                                                                                                                                 ggAAATGGGG‑AAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCt  <  1:882686/140‑1 (MQ=255)                                                                                                                                   aaaTGGGG‑AAAAGAGATGCGCTTTAGTCTGGAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCt  >  2:636922/1‑138 (MQ=255)                                                                                                                                   aaaTGGGG‑AAAAGAGATGCGCTTTAGTCTGGAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCt  <  1:636922/138‑1 (MQ=255)                                                                                                                                           |                                                                                                                                   GTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGACATTTGGGCAGAAAATTGGATGATAGTTTACCAGATTTTGCGACCATTGTGGTGAGTCGATGCCGGAAATGGGGAAAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCT  >  NC_000913/3377485‑3377753

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑